AT1G50560

cytochrome P450

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
18724190 .. 18726272
2083 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G50560.1

Sequence Viewer

Length: 1560 bp
ATGGCAGCAATCAGCGTTGACTTTCAGCTCTGCTTCATCTTCATCCTCCTAGCAATCTTCTCACTCTTCTGTTTCTCTGCTTTCTTCTTCAAGAAACCAAAAGACCCACAACTTCAAGGCTGCGGTCTACCTCCGAGCCCACCGTCTCTACCGATCATTGGTCATCTTCACTTTCTCCTCTCTGTTCCATGTTACAAATCCTTTCAGAAACTCTCCTCCAAGTATGGTCCCTTCCTTCACCTCCGCGCTTTCAATATCCCTATAGTTCTAGTCTCGTCGGGCTCCATGGCCAACGAAGTTTTGAGGATCCAAGACCTGAACTTTGCTAGCCGTGATAGCGGGCAGACTCCTATAATGGAAAAATCATTACTTTTTGGATCTTTTGGCTTTGTCTCAGTTCCTTATGGAGATTACTGGAGATTCATGAAGAAGCTCTTAGTCAAAAAACTTCTCGGGTCTCATTCCCTCGAGCAGACACGGCTCCTCCGTGGGAAAGAACTCCAAACTTTCCGTGCTATGTTGTTTGATAAGGCGGCAAAGAATGAGACTGTTGACGTTGGTAAAGAGATGATGAAGCTAACGAACAACAGCATTTGCAGGATGACAATGGGGAGGAGCTGTTCAGAGGAGAACGGTGAAGCAGAGCAAGTCAGGGGTTTGGTGACCAAATCACTTAGTTTGACGAAGAAGTTCCTCATAGCTAGCATTGTTGGTCAATTTTCCAAGCTGGTCGGGATCTCTTTGTTTGGGAAGGAAATCATGGAGGTCTCGCAGAGGTACGATGAATTGCTGGAGAAAATTATTAAGGAACACGAAGAAAATCCCAACAATGGAGAGGATAGAGACATGATGGATGTTCTATTGGAAGTTTGTGCAGATGACAACGCCGAGTTTAAGATTTCCAGGAACCAAATCAAAGCACTTTTTGTGGAGATTTTCCTTGCAGGCACTGATACTTCAGCACAAACAATACAGTGGATATTGGCAGAACTCATTAACCATCCCGAGATTCTTGAAAAGTTGAGAAAAGAGATAGAATCTGTTGTTGGGGTTAGGAGACTGATTCAAGAAACAGATCTCCCCAACCTGCCGTATTTACAGGCTGTGATGAAAGAAGGGCTAAGACTACACCCGCATACGCCAATCTTGGTGAGGAATGCAACAGAAGGATGCAAGATCGGAGGGTATTACATAGGGCAGAACACAACAATGATGGTAAACGCTTATGCGGTGCTGAGAGATCCGGATTCATGGGAATATCCAGAAGAATTTCAGCCCGAGAGGTTCATGACTTCTCCTTTAAAAGGGAAAGAAGATGAGAAAGCACAGCTAGCCTTGAACTTCATTCCTTTCGGGAGTGGAAGAAGAGGATGTCTCGGAAAAAACTTGGGTTATATCTTCATGGGAGTAGCCATTGGAACAATGGTGCAGGGTTTTGATTGGAGAATCAATGGAGATAAGGTTAACATGGAAGAGACTGGAGAAATGACGCTGACCATGGCTCATCCACTTAAATGCATTCCTGTTGCTCGAATCAACCCAGCTAGCTTTGATCCTTAG

Protein Analysis

519

Amino Acids

58.47

Weight (kDa)

7.1

Isoelectric Point (pI)

30.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 44 - 502 1e-91 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1095
AccI GTMKAC 1 cut(s) 127
AccII CGCG 1 cut(s) 246
AccIII TCCGGA 1 cut(s) 1243
AciI CCGC 6 cut(s) 123, 244, 339, 533, 1133, 1229
AclWI GGATC 6 cut(s) 301, 314, 385, 743, 1235, 1547
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 1 cut(s) 1268
AcuI CTGAAG 1 cut(s) 942
AfaI GTAC 1 cut(s) 779
AfiI CCNNNNNNNGG 3 cut(s) 158, 830, 1304
AgsI TTSAA 6 cut(s) 91, 116, 253, 1016, 1067, 1339
AjnI CCWGG 1 cut(s) 902
AjuI GAANNNNNNNTTGG 2 cut(s) 1029, 1061
AloI GAACNNNNNNTCC 2 cut(s) 604, 636
AluBI AGCT 9 cut(s) 28, 433, 577, 618, 701, 727, 1330, 1544, 1548
AluI AGCT 9 cut(s) 28, 433, 577, 618, 701, 727, 1330, 1544, 1548
AlwI GGATC 6 cut(s) 301, 314, 385, 743, 1235, 1547
AlwNI CAGNNNCTG 1 cut(s) 950
Ama87I CYCGRG 4 cut(s) 452, 467, 1004, 1277
Aor13HI TCCGGA 1 cut(s) 1243
AoxI GGCC 1 cut(s) 288
ApeKI GCWGC 2 cut(s) 5, 120
ApoI RAATTY 1 cut(s) 1268
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
Asp700I GAANNNNTTC 2 cut(s) 689, 1269
AspLEI GCGC 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 227
AsuHPI GGTGA 4 cut(s) 230, 647, 673, 1162
AsuNHI GCTAGC 4 cut(s) 326, 701, 1330, 1544
AvaI CYCGRG 4 cut(s) 452, 467, 1004, 1277
AvaII GGWCC 1 cut(s) 227
BalI TGGCCA 1 cut(s) 290
BamHI GGATCC 1 cut(s) 306
BanII GRGCYC 2 cut(s) 140, 284
BarI GAAGNNNNNNTAC 2 cut(s) 215, 247
BbvI GCAGC 2 cut(s) 17, 107
BccI CCATC 3 cut(s) 844, 1008, 1207
BceAI ACGGC 3 cut(s) 315, 494, 1075
BciT130I CCWGG 1 cut(s) 904
BfaI CTAG 6 cut(s) 50, 269, 327, 702, 1331, 1545
BfmI CTRYAG 1 cut(s) 261
BfuAI ACCTGC 1 cut(s) 1095
BglII AGATCT 1 cut(s) 1075
BisI GCNGC 3 cut(s) 6, 121, 534
BlsI GCNGC 3 cut(s) 7, 122, 535
Bme1390I CCNGG 1 cut(s) 904
Bme18I GGWCC 1 cut(s) 227
BmeT110I CYCGRG 4 cut(s) 452, 467, 1004, 1277
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 5 cut(s) 229, 283, 308, 482, 908
BmrFI CCNGG 1 cut(s) 904
BmsI GCATC 1 cut(s) 1160
BmtI GCTAGC 4 cut(s) 330, 705, 1334, 1548
BplI GAGNNNNNCTC 2 cut(s) 1359, 1391
BpmI CTGGAG 3 cut(s) 436, 812, 1500
BsaI GGTCTC 2 cut(s) 462, 772
BsaJI CCNNGG 3 cut(s) 285, 487, 1497
BsaWI WCCGGW 1 cut(s) 1243
BsaXI ACNNNNNCTCC 6 cut(s) 468, 498, 604, 634, 1446, 1476
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 830, 1304
Bse1I ACTGG 2 cut(s) 419, 1483
BseAI TCCGGA 1 cut(s) 1243
BseBI CCWGG 1 cut(s) 904
BseDI CCNNGG 3 cut(s) 285, 487, 1497
BseGI GGATG 7 cut(s) 42, 606, 859, 1000, 1175, 1376, 1504
BseLI CCNNNNNNNGG 3 cut(s) 158, 830, 1304
BseMII CTCAG 2 cut(s) 408, 1226
BseNI ACTGG 2 cut(s) 419, 1483
BseRI GAGGAG 5 cut(s) 167, 205, 473, 628, 641
BseXI GCAGC 2 cut(s) 17, 107
BseYI CCCAGC 1 cut(s) 1540
BsgI GTGCAG 2 cut(s) 894, 1448
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 1 cut(s) 290
BsiHKCI CYCGRG 4 cut(s) 452, 467, 1004, 1277
BsiSI CCGG 1 cut(s) 1244
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 3 cut(s) 158, 830, 1304
BsmBI CGTCTC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 213
BsmI GAATGC 2 cut(s) 1162, 1518
BsnI GGCC 1 cut(s) 290
Bso31I GGTCTC 2 cut(s) 462, 772
BsoBI CYCGRG 4 cut(s) 452, 467, 1004, 1277
Bsp1286I GDGCHC 2 cut(s) 140, 284
Bsp13I TCCGGA 1 cut(s) 1243
Bsp143I GATC 8 cut(s) 153, 306, 377, 735, 1075, 1176, 1240, 1552
Bsp19I CCATGG 2 cut(s) 285, 1497
BspACI CCGC 6 cut(s) 123, 244, 339, 533, 1133, 1229
BspANI GGCC 1 cut(s) 290
BspCNI CTCAG 2 cut(s) 407, 1227
BspEI TCCGGA 1 cut(s) 1243
BspFNI CGCG 1 cut(s) 246
BspHI TCATGA 2 cut(s) 423, 1287
BspLI GGNNCC 5 cut(s) 229, 283, 308, 482, 908
BspMI ACCTGC 1 cut(s) 1095
BspOI GCTAGC 4 cut(s) 330, 705, 1334, 1548
BspPI GGATC 6 cut(s) 301, 314, 385, 743, 1235, 1547
BspTNI GGTCTC 2 cut(s) 462, 772
BsrI ACTGG 2 cut(s) 419, 1483
BssECI CCNNGG 3 cut(s) 285, 487, 1497
BssMI GATC 8 cut(s) 153, 306, 377, 735, 1075, 1176, 1240, 1552
BssT1I CCWWGG 2 cut(s) 285, 1497
Bst2UI CCWGG 1 cut(s) 904
Bst4CI ACNGT 4 cut(s) 144, 550, 635, 975
Bst6I CTCTTC 3 cut(s) 71, 1360, 1467
BstC8I GCNNGC 6 cut(s) 328, 341, 703, 946, 1332, 1546
BstDEI CTNAG 6 cut(s) 394, 436, 674, 1121, 1235, 1557
BstDSI CCRYGG 3 cut(s) 285, 487, 1497
BstEII GGTNACC 1 cut(s) 661
BstENI CCTNNNNNAGG 1 cut(s) 1302
BstF5I GGATG 7 cut(s) 42, 606, 859, 1000, 1175, 1376, 1504
BstFNI CGCG 1 cut(s) 246
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 8 cut(s) 156, 309, 380, 738, 1078, 1179, 1243, 1555
BstMBI GATC 8 cut(s) 153, 306, 377, 735, 1075, 1176, 1240, 1552
BstMWI GCNNNNNNNGC 3 cut(s) 336, 478, 1331
BstNI CCWGG 1 cut(s) 904
BstPI GGTNACC 1 cut(s) 661
BstSCI CCNGG 1 cut(s) 902
BstSFI CTRYAG 1 cut(s) 261
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 17, 107
BstX2I RGATCY 5 cut(s) 306, 377, 735, 1075, 1240
BstYI RGATCY 5 cut(s) 306, 377, 735, 1075, 1240
BsuRI GGCC 1 cut(s) 290
BtgI CCRYGG 3 cut(s) 285, 487, 1497
BtsCI GGATG 7 cut(s) 42, 606, 859, 1000, 1175, 1376, 1504
BtsIMutI CAGTG 2 cut(s) 948, 980
BveI ACCTGC 1 cut(s) 1095
Cac8I GCNNGC 6 cut(s) 328, 341, 703, 946, 1332, 1546
CaiI CAGNNNCTG 1 cut(s) 950
CciI TCATGA 2 cut(s) 423, 1287
CfoI GCGC 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 227
CseI GACGC 1 cut(s) 1498
Csp6I GTAC 1 cut(s) 778
CviQI GTAC 1 cut(s) 778
DdeI CTNAG 6 cut(s) 394, 436, 674, 1121, 1235, 1557
DpnI GATC 8 cut(s) 155, 308, 379, 737, 1077, 1178, 1242, 1554
DpnII GATC 8 cut(s) 153, 306, 377, 735, 1075, 1176, 1240, 1552
DraI TTTAAA 1 cut(s) 1302
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 3 cut(s) 71, 1360, 1467
EarI CTCTTC 3 cut(s) 71, 1360, 1467
Eco130I CCWWGG 2 cut(s) 285, 1497
Eco24I GRGCYC 2 cut(s) 140, 284
Eco31I GGTCTC 2 cut(s) 462, 772
Eco47I GGWCC 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 942
Eco88I CYCGRG 4 cut(s) 452, 467, 1004, 1277
Eco91I GGTNACC 1 cut(s) 661
EcoNI CCTNNNNNAGG 1 cut(s) 1302
EcoO65I GGTNACC 1 cut(s) 661
EcoRII CCWGG 1 cut(s) 902
EcoT14I CCWWGG 2 cut(s) 285, 1497
EcoT22I ATGCAT 1 cut(s) 1520
EcoT38I GRGCYC 2 cut(s) 140, 284
ErhI CCWWGG 2 cut(s) 285, 1497
Esp3I CGTCTC 1 cut(s) 150
FalI AAGNNNNNCTT 2 cut(s) 419, 451
FaqI GGGAC 1 cut(s) 213
FauI CCCGC 2 cut(s) 332, 1140
FblI GTMKAC 1 cut(s) 127
Fnu4HI GCNGC 3 cut(s) 6, 121, 534
FokI GGATG 7 cut(s) 29, 613, 866, 987, 1182, 1383, 1491
FriOI GRGCYC 2 cut(s) 140, 284
Fsp4HI GCNGC 3 cut(s) 6, 121, 534
FspBI CTAG 6 cut(s) 50, 269, 327, 702, 1331, 1545
GlaI GCGC 1 cut(s) 247
GluI GCNGC 3 cut(s) 6, 121, 534
GsaI CCCAGC 1 cut(s) 1544
GsuI CTGGAG 3 cut(s) 436, 812, 1500
HaeIII GGCC 1 cut(s) 290
HapII CCGG 1 cut(s) 1244
HgaI GACGC 1 cut(s) 1498
HhaI GCGC 1 cut(s) 248
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HincII GTYRAC 3 cut(s) 19, 553, 1465
HindII GTYRAC 3 cut(s) 19, 553, 1465
HinfI GANTC 8 cut(s) 346, 420, 1009, 1037, 1063, 1247, 1446, 1533
HpaI GTTAAC 1 cut(s) 1465
HpaII CCGG 1 cut(s) 1244
HphI GGTGA 4 cut(s) 230, 647, 673, 1162
Hpy166II GTNNAC 5 cut(s) 19, 128, 553, 1219, 1465
Hpy188I TCNGA 5 cut(s) 135, 207, 625, 1181, 1379
Hpy8I GTNNAC 5 cut(s) 19, 128, 553, 1219, 1465
Hpy99I CGWCG 1 cut(s) 280
HpyAV CCTTC 5 cut(s) 241, 245, 745, 1109, 1160
HpyCH4III ACNGT 4 cut(s) 144, 550, 635, 975
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 7 cut(s) 597, 875, 944, 1160, 1173, 1429, 1518
HpyF10VI GCNNNNNNNGC 3 cut(s) 336, 478, 1331
HpyF3I CTNAG 6 cut(s) 394, 436, 674, 1121, 1235, 1557
HpySE526I ACGT 1 cut(s) 555
HspAI GCGC 1 cut(s) 246
Kpn2I TCCGGA 1 cut(s) 1243
KspAI GTTAAC 1 cut(s) 1465
Kzo9I GATC 8 cut(s) 153, 306, 377, 735, 1075, 1176, 1240, 1552
LmnI GCTCC 3 cut(s) 287, 486, 615
Lsp1109I GCAGC 2 cut(s) 17, 107
LweI GCATC 1 cut(s) 1160
MaeI CTAG 6 cut(s) 50, 269, 327, 702, 1331, 1545
MaeII ACGT 1 cut(s) 555
MaeIII GTNAC 2 cut(s) 191, 661
MalI GATC 8 cut(s) 155, 308, 379, 737, 1077, 1178, 1242, 1554
MboI GATC 8 cut(s) 153, 306, 377, 735, 1075, 1176, 1240, 1552
MflI RGATCY 5 cut(s) 306, 377, 735, 1075, 1240
MhlI GDGCHC 2 cut(s) 140, 284
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 4 cut(s) 716, 785, 798, 1268
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 1 cut(s) 340
Mox20I TGGCCA 1 cut(s) 290
Mph1103I ATGCAT 1 cut(s) 1520
MroI TCCGGA 1 cut(s) 1243
MroXI GAANNNNTTC 2 cut(s) 689, 1269
MscI TGGCCA 1 cut(s) 290
MseI TTAA 6 cut(s) 804, 894, 996, 1301, 1464, 1512
MslI CAYNNNNRTG 2 cut(s) 1208, 1513
Msp20I TGGCCA 1 cut(s) 290
MspI CCGG 1 cut(s) 1244
MspR9I CCNGG 1 cut(s) 904
Mva1269I GAATGC 2 cut(s) 1162, 1518
MvaI CCWGG 1 cut(s) 904
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 3 cut(s) 336, 478, 1331
NcoI CCATGG 2 cut(s) 285, 1497
NdeII GATC 8 cut(s) 153, 306, 377, 735, 1075, 1176, 1240, 1552
NheI GCTAGC 4 cut(s) 326, 701, 1330, 1544
NlaIV GGNNCC 5 cut(s) 229, 283, 308, 482, 908
NmeAIII GCCGAG 1 cut(s) 913
NmuCI GTSAC 1 cut(s) 661
NsiI ATGCAT 1 cut(s) 1520
PaeR7I CTCGAG 1 cut(s) 467
PagI TCATGA 2 cut(s) 423, 1287
PcsI WCGNNNNNNNCGW 1 cut(s) 484
PctI GAATGC 2 cut(s) 1162, 1518
PdmI GAANNNNTTC 2 cut(s) 689, 1269
PfeI GAWTC 7 cut(s) 420, 1009, 1037, 1063, 1247, 1446, 1533
PfoI TCCNGGA 1 cut(s) 902
PkrI GCNGC 3 cut(s) 7, 122, 535
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
Psp6I CCWGG 1 cut(s) 902
PspEI GGTNACC 1 cut(s) 661
PspFI CCCAGC 1 cut(s) 1540
PspGI CCWGG 1 cut(s) 902
PspN4I GGNNCC 5 cut(s) 229, 283, 308, 482, 908
PspPI GGNCC 1 cut(s) 227
PspXI VCTCGAGB 1 cut(s) 467
PstNI CAGNNNCTG 1 cut(s) 950
PsuI RGATCY 5 cut(s) 306, 377, 735, 1075, 1240
RsaI GTAC 1 cut(s) 779
RsaNI GTAC 1 cut(s) 778
RseI CAYNNNNRTG 2 cut(s) 1208, 1513
SaqAI TTAA 6 cut(s) 804, 894, 996, 1301, 1464, 1512
SatI GCNGC 3 cut(s) 6, 121, 534
Sau3AI GATC 8 cut(s) 153, 306, 377, 735, 1075, 1176, 1240, 1552
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 1 cut(s) 340
ScrFI CCNGG 1 cut(s) 904
SduI GDGCHC 2 cut(s) 140, 284
SfaNI GCATC 1 cut(s) 1160
SfcI CTRYAG 1 cut(s) 261
Sfr274I CTCGAG 1 cut(s) 467
SinI GGWCC 1 cut(s) 227
SlaI CTCGAG 1 cut(s) 467
SmiMI CAYNNNNRTG 2 cut(s) 1208, 1513
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
Sse9I AATT 4 cut(s) 716, 785, 798, 1268
SsiI CCGC 6 cut(s) 123, 244, 339, 533, 1133, 1229
SspMI CTAG 6 cut(s) 50, 269, 327, 702, 1331, 1545
StyD4I CCNGG 1 cut(s) 902
StyI CCWWGG 2 cut(s) 285, 1497
TaaI ACNGT 4 cut(s) 144, 550, 635, 975
TaiI ACGT 1 cut(s) 558
TaqI TCGA 2 cut(s) 468, 1531
TasI AATT 4 cut(s) 716, 785, 798, 1268
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 7 cut(s) 420, 1009, 1037, 1063, 1247, 1446, 1533
Tru1I TTAA 6 cut(s) 804, 894, 996, 1301, 1464, 1512
Tru9I TTAA 6 cut(s) 804, 894, 996, 1301, 1464, 1512
TscAI CASTG 2 cut(s) 955, 980
TseFI GTSAC 1 cut(s) 661
TseI GCWGC 2 cut(s) 5, 120
Tsp45I GTSAC 1 cut(s) 661
TspGWI ACGGA 2 cut(s) 476, 500
TspRI CASTG 2 cut(s) 955, 980
VpaK11BI GGWCC 1 cut(s) 227
XagI CCTNNNNNAGG 1 cut(s) 1302
XapI RAATTY 1 cut(s) 1268
XcmI CCANNNNNNNNNTGG 1 cut(s) 1420
XhoI CTCGAG 1 cut(s) 467
XmiI GTMKAC 1 cut(s) 127
XmnI GAANNNNTTC 2 cut(s) 689, 1269
XspI CTAG 6 cut(s) 50, 269, 327, 702, 1331, 1545
Zsp2I ATGCAT 1 cut(s) 1520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.