AT3G20090

cytochrome P450

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
7015796 .. 7018651
2856 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G20090.1

Sequence Viewer

Length: 1161 bp
ATGAAGAAGATCTTCGCCACTAAGCTGCTCCGACCACAGGTGCTGGAGAATTCACGTGGTGTTCGTGCTGAAGAGTTAAAGCGGTTTTACAGGAGAATTCTCGATAAGGCGAGGAAGAATGAGAACATCGAGATCAGTAAGGAATCGGCGATGCTCATGAACAACATCTTATGCAGGATGAGCATGGGAAGGAGTTTTTCAGAGGAAAATGGTGAGGCAGAGAGAGTCAGGGGCCTGGTGGGTGAATCATATGCCTTGGTGAAGAAGATTTTCTTCGCAGCTACATTGCGCAGACTGCTTGAGAAGCTTCGGATCCCACTATTCAGGAAGGAGATAATGGGTGTGTCCGACAGATTTGATGAGCTGCTAGAGAGGATTATTGTGGAACACAAAGACAAACTTGAAAAGGAGCATCAAGTTATGGATATGATGGATGTGTTGTTGGCAGCTTATCGAGACAAAAACGCAGAGTATAAGATCACTAGGAATCATATCAAGTCGTTTTTTGTGGACCTTTTCGTTGGGGGCACTGATACCTCGGTCCAAACAACACAATGGACTATGGCTGAGATCATTAATAACCCTAACATTCTTCAGACACTGAGAAAAGAAATCGATTCAGTTGTAGGGAAATCAAGGTTGATTCACGAAACGGATATACCAAACCTTCCTTATTTGCAAGCAGTGGTTAAGGAAGGACTAAGATTGCATCCTCCAGGGCCCCTCTTGATAAGGACTTTTCAAGAAAGATGTGAGATGAAAGGGTTCTACATACCGGAGAAGACAACACTCGTTATCAACGCTTATGCTGTGATGAGAGATCCCGACTCTTGGGAAGATCCTGACGAGTTTAAGCCAGAGAGGTTTCTAAGTTATTCAAGATCAGGGCAAGAAGACGAGAAAGAGCAAACACTTAAGTACCTTTCTTTTGGTGGCGGAAGGAGAGGATGTCCTGGAGTAAATCTAGGTTATATATTTGTTGGAACTGCAATAGGAATGATGGTGCAGTGCTTTGACTGGAAAATCGAAGGAGATAAGGTCAACATGGAAGAGACTTATGGAGGAATGAACCTAACCATGGTTAACCCGCTTAAGTGCACTCCAGTTCCTCGAACCCAACCTTTTTCTTTTACTTCTAATCTCGAGATTCTTAGTTCCTGA

Protein Analysis

386

Amino Acids

44.57

Weight (kDa)

8.62

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 352 1.4e-72 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 290
AciI CCGC 3 cut(s) 82, 936, 1088
AclWI GGATC 4 cut(s) 307, 320, 815, 833
AcsI RAATTY 2 cut(s) 49, 96
AcuI CTGAAG 2 cut(s) 90, 578
AcvI CACGTG 1 cut(s) 56
AdeI CACNNNGTG 1 cut(s) 59
AfaI GTAC 1 cut(s) 920
AfiI CCNNNNNNNGG 3 cut(s) 37, 831, 1078
AflII CTTAAG 2 cut(s) 914, 1091
AgsI TTSAA 3 cut(s) 404, 743, 879
AjnI CCWGG 3 cut(s) 234, 715, 952
AluBI AGCT 5 cut(s) 25, 281, 307, 364, 449
AluI AGCT 5 cut(s) 25, 281, 307, 364, 449
Alw21I GWGCWC 1 cut(s) 1100
Alw26I GTCTC 2 cut(s) 450, 1046
Alw44I GTGCAC 1 cut(s) 1096
AlwI GGATC 4 cut(s) 307, 320, 815, 833
AlwNI CAGNNNCTG 2 cut(s) 43, 601
Ama87I CYCGRG 1 cut(s) 1142
AoxI GGCC 2 cut(s) 232, 719
ApaI GGGCCC 1 cut(s) 723
ApaLI GTGCAC 1 cut(s) 1096
ApeKI GCWGC 4 cut(s) 25, 278, 364, 446
ApoI RAATTY 2 cut(s) 49, 96
AseI ATTAAT 1 cut(s) 576
Asp700I GAANNNNTTC 3 cut(s) 11, 269, 764
AspLEI GCGC 1 cut(s) 291
AspS9I GGNCC 5 cut(s) 232, 511, 541, 719, 720
AsuHPI GGTGA 3 cut(s) 224, 254, 271
AvaI CYCGRG 1 cut(s) 1142
AvaII GGWCC 2 cut(s) 511, 541
BaeGI GKGCMC 3 cut(s) 530, 723, 1100
BaeI ACNNNNGTAYC 4 cut(s) 525, 558, 902, 935
BamHI GGATCC 1 cut(s) 312
BanII GRGCYC 1 cut(s) 723
BbrPI CACGTG 1 cut(s) 56
BbsI GAAGAC 2 cut(s) 788, 900
Bbv12I GWGCWC 1 cut(s) 1100
BbvI GCAGC 4 cut(s) 12, 290, 351, 458
BccI CCATC 2 cut(s) 424, 994
BciT130I CCWGG 3 cut(s) 236, 717, 954
BcoDI GTCTC 2 cut(s) 450, 1046
BfaI CTAG 3 cut(s) 368, 483, 965
BfrI CTTAAG 2 cut(s) 914, 1091
BglII AGATCT 1 cut(s) 9
BisI GCNGC 4 cut(s) 26, 279, 365, 447
BlsI GCNGC 4 cut(s) 27, 280, 366, 448
Bme1390I CCNGG 3 cut(s) 236, 717, 954
Bme18I GGWCC 2 cut(s) 511, 541
BmeT110I CYCGRG 1 cut(s) 1142
BmgT120I GGNCC 5 cut(s) 232, 511, 541, 719, 720
BmiI GGNNCC 4 cut(s) 233, 314, 721, 722
BmrFI CCNGG 3 cut(s) 236, 717, 954
BmsI GCATC 3 cut(s) 141, 421, 718
BpiI GAAGAC 2 cut(s) 788, 900
BpmI CTGGAG 4 cut(s) 65, 699, 975, 1086
BpuEI CTTGAG 1 cut(s) 320
Bsa29I ATCGAT 1 cut(s) 615
BsaAI YACGTR 1 cut(s) 56
BsaJI CCNNGG 4 cut(s) 255, 537, 716, 1077
BsaWI WCCGGW 1 cut(s) 775
BsaXI ACNNNNNCTCC 4 cut(s) 934, 964, 1023, 1053
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 831, 1078
Bse1I ACTGG 2 cut(s) 1022, 1103
Bse3DI GCAATG 1 cut(s) 284
BseBI CCWGG 3 cut(s) 236, 717, 954
BseCI ATCGAT 1 cut(s) 615
BseDI CCNNGG 4 cut(s) 255, 537, 716, 1077
BseGI GGATG 4 cut(s) 183, 439, 709, 953
BseLI CCNNNNNNNGG 3 cut(s) 37, 831, 1078
BseMI GCAATG 1 cut(s) 284
BseMII CTCAG 2 cut(s) 558, 593
BseNI ACTGG 2 cut(s) 1022, 1103
BseSI GKGCMC 3 cut(s) 530, 723, 1100
BseXI GCAGC 4 cut(s) 12, 290, 351, 458
BsgI GTGCAG 1 cut(s) 1025
BshFI GGCC 2 cut(s) 234, 721
BshVI ATCGAT 1 cut(s) 615
BsiHKAI GWGCWC 1 cut(s) 1100
BsiHKCI CYCGRG 1 cut(s) 1142
BsiSI CCGG 1 cut(s) 776
BslI CCNNNNNNNGG 3 cut(s) 37, 831, 1078
BsmAI GTCTC 2 cut(s) 450, 1046
BsnI GGCC 2 cut(s) 234, 721
BsoBI CYCGRG 1 cut(s) 1142
Bsp120I GGGCCC 1 cut(s) 719
Bsp1286I GDGCHC 3 cut(s) 530, 723, 1100
Bsp143I GATC 8 cut(s) 9, 132, 312, 477, 570, 820, 838, 881
Bsp19I CCATGG 1 cut(s) 1077
BspACI CCGC 3 cut(s) 82, 936, 1088
BspANI GGCC 2 cut(s) 234, 721
BspCNI CTCAG 2 cut(s) 559, 594
BspDI ATCGAT 1 cut(s) 615
BspHI TCATGA 1 cut(s) 156
BspLI GGNNCC 4 cut(s) 233, 314, 721, 722
BspPI GGATC 4 cut(s) 307, 320, 815, 833
BspTI CTTAAG 2 cut(s) 914, 1091
BsrDI GCAATG 1 cut(s) 284
BsrI ACTGG 2 cut(s) 1022, 1103
BssECI CCNNGG 4 cut(s) 255, 537, 716, 1077
BssMI GATC 8 cut(s) 9, 132, 312, 477, 570, 820, 838, 881
BssT1I CCWWGG 2 cut(s) 255, 1077
Bst2UI CCWGG 3 cut(s) 236, 717, 954
Bst6I CTCTTC 2 cut(s) 66, 1044
BstAFI CTTAAG 2 cut(s) 914, 1091
BstBAI YACGTR 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 681
BstDEI CTNAG 6 cut(s) 21, 567, 602, 701, 869, 1151
BstDSI CCRYGG 1 cut(s) 1077
BstF5I GGATG 4 cut(s) 183, 439, 709, 953
BstHHI GCGC 1 cut(s) 291
BstKTI GATC 8 cut(s) 12, 135, 315, 480, 573, 823, 841, 884
BstMAI GTCTC 2 cut(s) 450, 1046
BstMBI GATC 8 cut(s) 9, 132, 312, 477, 570, 820, 838, 881
BstMWI GCNNNNNNNGC 3 cut(s) 180, 295, 304
BstNI CCWGG 3 cut(s) 236, 717, 954
BstSCI CCNGG 3 cut(s) 234, 715, 952
BstSLI GKGCMC 3 cut(s) 530, 723, 1100
BstV1I GCAGC 4 cut(s) 12, 290, 351, 458
BstV2I GAAGAC 2 cut(s) 788, 900
BstX2I RGATCY 4 cut(s) 9, 312, 820, 838
BstYI RGATCY 4 cut(s) 9, 312, 820, 838
Bsu15I ATCGAT 1 cut(s) 615
BsuRI GGCC 2 cut(s) 234, 721
BsuTUI ATCGAT 1 cut(s) 615
BtgI CCRYGG 1 cut(s) 1077
BtgZI GCGATG 1 cut(s) 164
BtsCI GGATG 4 cut(s) 183, 439, 709, 953
BtsI GCAGTG 2 cut(s) 690, 1013
BtsIMutI CAGTG 4 cut(s) 528, 599, 690, 1013
Cac8I GCNNGC 1 cut(s) 681
CaiI CAGNNNCTG 2 cut(s) 43, 601
CciI TCATGA 1 cut(s) 156
CfoI GCGC 1 cut(s) 291
Cfr13I GGNCC 5 cut(s) 232, 511, 541, 719, 720
ClaI ATCGAT 1 cut(s) 615
Csp6I GTAC 1 cut(s) 919
CviAII CATG 4 cut(s) 157, 184, 1045, 1078
CviJI RGCY 9 cut(s) 25, 234, 281, 307, 364, 449, 566, 721, 856
CviKI_1 RGCY 9 cut(s) 25, 234, 281, 307, 364, 449, 566, 721, 856
CviQI GTAC 1 cut(s) 919
DdeI CTNAG 6 cut(s) 21, 567, 602, 701, 869, 1151
DpnI GATC 8 cut(s) 11, 134, 314, 479, 572, 822, 840, 883
DpnII GATC 8 cut(s) 9, 132, 312, 477, 570, 820, 838, 881
DraIII CACNNNGTG 1 cut(s) 59
Eam1104I CTCTTC 2 cut(s) 66, 1044
EarI CTCTTC 2 cut(s) 66, 1044
EciI GGCGGA 1 cut(s) 951
Eco130I CCWWGG 2 cut(s) 255, 1077
Eco24I GRGCYC 1 cut(s) 723
Eco47I GGWCC 2 cut(s) 511, 541
Eco57I CTGAAG 2 cut(s) 90, 578
Eco72I CACGTG 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 1142
EcoO109I RGGNCCY 3 cut(s) 232, 719, 720
EcoRI GAATTC 2 cut(s) 49, 96
EcoRII CCWGG 3 cut(s) 234, 715, 952
EcoT14I CCWWGG 2 cut(s) 255, 1077
EcoT38I GRGCYC 1 cut(s) 723
ErhI CCWWGG 2 cut(s) 255, 1077
FaeI CATG 4 cut(s) 160, 187, 1048, 1081
FalI AAGNNNNNCTT 5 cut(s) 28, 257, 289, 384, 416
FatI CATG 4 cut(s) 156, 183, 1044, 1077
FauI CCCGC 1 cut(s) 1095
FauNDI CATATG 1 cut(s) 250
Fnu4HI GCNGC 4 cut(s) 26, 279, 365, 447
FokI GGATG 4 cut(s) 190, 446, 696, 960
FriOI GRGCYC 1 cut(s) 723
Fsp4HI GCNGC 4 cut(s) 26, 279, 365, 447
FspBI CTAG 3 cut(s) 368, 483, 965
FspI TGCGCA 1 cut(s) 290
GlaI GCGC 1 cut(s) 290
GluI GCNGC 4 cut(s) 26, 279, 365, 447
GsuI CTGGAG 4 cut(s) 65, 699, 975, 1086
HaeIII GGCC 2 cut(s) 234, 721
HapII CCGG 1 cut(s) 776
HhaI GCGC 1 cut(s) 291
Hin1II CATG 4 cut(s) 160, 187, 1048, 1081
Hin6I GCGC 1 cut(s) 289
HinP1I GCGC 1 cut(s) 289
HincII GTYRAC 2 cut(s) 1042, 1084
HindII GTYRAC 2 cut(s) 1042, 1084
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 8 cut(s) 143, 225, 245, 487, 617, 643, 827, 1147
HpaI GTTAAC 1 cut(s) 1084
HpaII CCGG 1 cut(s) 776
HphI GGTGA 3 cut(s) 224, 254, 271
Hpy166II GTNNAC 4 cut(s) 511, 1042, 1084, 1098
Hpy188I TCNGA 5 cut(s) 32, 202, 312, 349, 597
Hpy8I GTNNAC 4 cut(s) 511, 1042, 1084, 1098
HpyAV CCTTC 6 cut(s) 183, 322, 677, 689, 933, 1022
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 6 cut(s) 174, 679, 709, 989, 1006, 1098
HpyF10VI GCNNNNNNNGC 3 cut(s) 180, 295, 304
HpyF3I CTNAG 6 cut(s) 21, 567, 602, 701, 869, 1151
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 4 cut(s) 160, 187, 1048, 1081
HspAI GCGC 1 cut(s) 289
KspAI GTTAAC 1 cut(s) 1084
Kzo9I GATC 8 cut(s) 9, 132, 312, 477, 570, 820, 838, 881
LmnI GCTCC 2 cut(s) 33, 409
Lsp1109I GCAGC 4 cut(s) 12, 290, 351, 458
LweI GCATC 3 cut(s) 141, 421, 718
MaeI CTAG 3 cut(s) 368, 483, 965
MaeII ACGT 1 cut(s) 55
MalI GATC 8 cut(s) 11, 134, 314, 479, 572, 822, 840, 883
MboI GATC 8 cut(s) 9, 132, 312, 477, 570, 820, 838, 881
MflI RGATCY 4 cut(s) 9, 312, 820, 838
MhlI GDGCHC 3 cut(s) 530, 723, 1100
MluCI AATT 2 cut(s) 49, 96
MlyI GAGTC 2 cut(s) 234, 821
MmeI TCCRAC 3 cut(s) 55, 372, 961
MroXI GAANNNNTTC 3 cut(s) 11, 269, 764
MseI TTAA 7 cut(s) 77, 576, 690, 852, 915, 1083, 1092
MspCI CTTAAG 2 cut(s) 914, 1091
MspI CCGG 1 cut(s) 776
MspR9I CCNGG 3 cut(s) 236, 717, 954
MvaI CCWGG 3 cut(s) 236, 717, 954
MwoI GCNNNNNNNGC 3 cut(s) 180, 295, 304
NcoI CCATGG 1 cut(s) 1077
NdeI CATATG 1 cut(s) 250
NdeII GATC 8 cut(s) 9, 132, 312, 477, 570, 820, 838, 881
NlaIII CATG 4 cut(s) 160, 187, 1048, 1081
NlaIV GGNNCC 4 cut(s) 233, 314, 721, 722
NsbI TGCGCA 1 cut(s) 290
PaeR7I CTCGAG 1 cut(s) 1142
PagI TCATGA 1 cut(s) 156
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PdmI GAANNNNTTC 3 cut(s) 11, 269, 764
PfeI GAWTC 6 cut(s) 143, 245, 487, 617, 643, 1147
PfoI TCCNGGA 1 cut(s) 952
PkrI GCNGC 4 cut(s) 27, 280, 366, 448
PleI GAGTC 2 cut(s) 233, 821
PmaCI CACGTG 1 cut(s) 56
PmlI CACGTG 1 cut(s) 56
PpsI GAGTC 2 cut(s) 233, 821
Ppu21I YACGTR 1 cut(s) 56
PshBI ATTAAT 1 cut(s) 576
Psp6I CCWGG 3 cut(s) 234, 715, 952
PspCI CACGTG 1 cut(s) 56
PspGI CCWGG 3 cut(s) 234, 715, 952
PspN4I GGNNCC 4 cut(s) 233, 314, 721, 722
PspOMI GGGCCC 1 cut(s) 719
PspPI GGNCC 5 cut(s) 232, 511, 541, 719, 720
PstNI CAGNNNCTG 2 cut(s) 43, 601
PsuI RGATCY 4 cut(s) 9, 312, 820, 838
RsaI GTAC 1 cut(s) 920
RsaNI GTAC 1 cut(s) 919
SaqAI TTAA 7 cut(s) 77, 576, 690, 852, 915, 1083, 1092
SatI GCNGC 4 cut(s) 26, 279, 365, 447
Sau3AI GATC 8 cut(s) 9, 132, 312, 477, 570, 820, 838, 881
Sau96I GGNCC 5 cut(s) 232, 511, 541, 719, 720
SchI GAGTC 2 cut(s) 234, 821
ScrFI CCNGG 3 cut(s) 236, 717, 954
SduI GDGCHC 3 cut(s) 530, 723, 1100
SfaNI GCATC 3 cut(s) 141, 421, 718
Sfr274I CTCGAG 1 cut(s) 1142
SinI GGWCC 2 cut(s) 511, 541
SlaI CTCGAG 1 cut(s) 1142
SmlI CTYRAG 4 cut(s) 299, 914, 1091, 1142
SmoI CTYRAG 4 cut(s) 299, 914, 1091, 1142
Sse9I AATT 2 cut(s) 49, 96
SsiI CCGC 3 cut(s) 82, 936, 1088
SspMI CTAG 3 cut(s) 368, 483, 965
StyD4I CCNGG 3 cut(s) 234, 715, 952
StyI CCWWGG 2 cut(s) 255, 1077
TaiI ACGT 1 cut(s) 58
TaqI TCGA 7 cut(s) 102, 129, 454, 615, 1026, 1111, 1143
TaqII GACCGA 1 cut(s) 529
TasI AATT 2 cut(s) 49, 96
TfiI GAWTC 6 cut(s) 143, 245, 487, 617, 643, 1147
Tru1I TTAA 7 cut(s) 77, 576, 690, 852, 915, 1083, 1092
Tru9I TTAA 7 cut(s) 77, 576, 690, 852, 915, 1083, 1092
TscAI CASTG 4 cut(s) 535, 606, 690, 1013
TseI GCWGC 4 cut(s) 25, 278, 364, 446
TspDTI ATGAA 4 cut(s) 17, 173, 773, 1082
TspGWI ACGGA 1 cut(s) 668
TspRI CASTG 4 cut(s) 535, 606, 690, 1013
Vha464I CTTAAG 2 cut(s) 914, 1091
VneI GTGCAC 1 cut(s) 1096
VpaK11BI GGWCC 2 cut(s) 511, 541
VspI ATTAAT 1 cut(s) 576
XapI RAATTY 2 cut(s) 49, 96
XhoI CTCGAG 1 cut(s) 1142
XmnI GAANNNNTTC 3 cut(s) 11, 269, 764
XspI CTAG 3 cut(s) 368, 483, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.