AT3G20950

cytochrome P450

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
7342675 .. 7344744
2070 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G20950.1

Sequence Viewer

Length: 1581 bp
ATGGCAGCAATGATCACTGTTGACTTTCAAAATAGCTTCATCTTCATCCTCTTTTGTCTCTTCTCTCTCATTTGTTACTCTCTCTTCTTCAGGAAACCAAAAGATTCACGAGCTGGTCGTGATCTTCCTCCGAGCCCTCCTTCTTTTCCGGTTGGAAGCCCACAGTCTAATAATCTTCACCTTCTTCTCTCTGCTCTTGTTCACAAGTCTTTTCAAAAAATCTCCTACAAGTATGGACCTCTCCTCCATCTCCGTGTCTTTCATGTTCCCATAGTCCTAGCCTCCTCGGCCTCAGTGGCCTACGAAATTTTCAAGGCCCAAGATGTGAATGTCTCCTCTCGCGGTCACGCTCCAGCCGGGGAGTCTCTCTTGTTTGGATCTTCTAGCTTCTTCTTCGCTCCCTATGGAGATTACTTTAAATTTATGAGGAAGCTCATAGCCACAAAGCTTCTTGGACCGCAGGCACTCGAGCGTTCAAGAAAAATCCGTGCAGATGAGCTAGATCGGTTTTACAGAAATCTGCTTGACAAGGCGATGAAGAAGGAGAGTGTCGATATCGTTGAGGAAGCAGCGAAGCTTAATAACAATATCATCTGCAAGATGATCATGGGGAGGAGTTGTTCTGAGGACAACGGTGAGGCGGAGAGAGTCAGAGGCTTGGTGATTGAGTCTACGGCCTTGACAAAGCAAATCTTCTTGGGTATGATCTTTGATAAACCGCTTAAGAAGCTTGGGATCTCATTGTTCCAAAAGGATATAAAAAGTGTTTCCCGCTTCGACGAGCTGCTGGAGAAGATTCTTGTTGAACACGAAGAGAGAATGGGGAAGCATTATAAAGCTAATGACATGATGGATTTGTTGTTGGAAGCTTATGGAGATGAAAATGCAGAGTATAAAATCACAAGAAACCATATCAAGTCCTTGTTCGTGGATCTTGTCATTGCCGGCACTGACACCTCGGCGCAAACAATAGAGTGGACAATGGCGGAGCTTATTAACAACCCTAACATTCTTGAGAGATTGAGAGAAGAAATAGAATCGGTTGTAGGGAACACAAGGTTAGTTCAAGAAACCGATCTACCAAACCTCCCTTACTTGCAAGCGGTAGTCAAAGAAGGGCTAAGGTTGCATCCGCCAGGGGCTGTGTTCTTAAGAACGTTCCAAGAAAGGTGTGAACTCAAAGGGTTCTACATACCGGAAAAGACATTGCTTGTTGTTAATGTTTATGCTATAATGAGAGATCCTAAGCTTTGGGAAGATCCTGAGGAGTTTAAACCTGAGAGGTTTATAGCATCTTCAAGATCAGGGCAAGAGGACGAGATAAGAGAGGAAGTCCTGAAATACATGCCTTTCTCAACTGGAAGGAGAGGCTGTCCTGGATCCAATCTAGCTTATGTCTCTGTAGGAACCGCGATTGGAGTAATGGCGCAATGCTTTGATTGGAGAATCAAAGGAGAGAAAGTAAACATGAACGAGGCTGCTGGAACATTGGTGTTGACTATGGCTCAGCCTCTTATGTGCACTCCTGGTCCTCGAACCCTAAACCCTTTACCTTCAAGTCTGCATGTACCCATTTCTTGA

Protein Analysis

526

Amino Acids

59.44

Weight (kDa)

7.99

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 60 - 500 1.3e-86 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 834
AccI GTMKAC 1 cut(s) 671
AccII CGCG 2 cut(s) 342, 1412
AciI CCGC 9 cut(s) 342, 458, 641, 719, 772, 986, 1103, 1133, 1410
AclI AACGTT 1 cut(s) 1157
AclWI GGATC 7 cut(s) 385, 743, 939, 1235, 1253, 1374, 1387
AcsI RAATTY 2 cut(s) 306, 419
AcuI CTGAAG 1 cut(s) 73
AfaI GTAC 1 cut(s) 1569
AflII CTTAAG 2 cut(s) 722, 1150
AgsI TTSAA 8 cut(s) 29, 215, 313, 477, 806, 1067, 1299, 1557
AjnI CCWGG 3 cut(s) 1135, 1375, 1525
AloI GAACNNNNNNTCC 2 cut(s) 604, 636
Alw21I GWGCWC 1 cut(s) 1523
Alw26I GTCTC 4 cut(s) 62, 337, 369, 1402
Alw44I GTGCAC 1 cut(s) 1519
AlwI GGATC 7 cut(s) 385, 743, 939, 1235, 1253, 1374, 1387
AlwNI CAGNNNCTG 1 cut(s) 1142
Ama87I CYCGRG 1 cut(s) 467
AoxI GGCC 4 cut(s) 288, 297, 315, 675
ApaLI GTGCAC 1 cut(s) 1519
ApeKI GCWGC 4 cut(s) 5, 569, 784, 1478
ApoI RAATTY 2 cut(s) 306, 419
AspLEI GCGC 2 cut(s) 964, 1429
AspS9I GGNCC 4 cut(s) 236, 316, 455, 1529
AsuC2I CCSGG 1 cut(s) 358
AsuHPI GGTGA 3 cut(s) 170, 647, 673
AvaI CYCGRG 1 cut(s) 467
AvaII GGWCC 3 cut(s) 236, 455, 1529
AxyI CCTNAGG 1 cut(s) 1263
BaeGI GKGCMC 1 cut(s) 1523
BamHI GGATCC 1 cut(s) 1379
BanII GRGCYC 1 cut(s) 137
BauI CACGAG 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 1523
BbvI GCAGC 4 cut(s) 17, 581, 771, 1465
BccI CCATC 2 cut(s) 255, 844
BceAI ACGGC 1 cut(s) 690
BciT130I CCWGG 3 cut(s) 1137, 1377, 1527
BclI TGATCA 2 cut(s) 12, 603
BcnI CCSGG 1 cut(s) 358
BcoDI GTCTC 4 cut(s) 62, 337, 369, 1402
BfaI CTAG 4 cut(s) 278, 384, 500, 1388
BfmI CTRYAG 1 cut(s) 1401
BfrI CTTAAG 2 cut(s) 722, 1150
BglI GCCNNNNNGGC 2 cut(s) 287, 296
BisI GCNGC 4 cut(s) 6, 570, 785, 1479
BlpI GCTNAGC 1 cut(s) 1506
BlsI GCNGC 4 cut(s) 7, 571, 786, 1480
Bme1390I CCNGG 4 cut(s) 358, 1137, 1377, 1527
Bme18I GGWCC 3 cut(s) 236, 455, 1529
BmeT110I CYCGRG 1 cut(s) 467
BmgT120I GGNCC 4 cut(s) 236, 316, 455, 1529
BmiI GGNNCC 2 cut(s) 1381, 1408
BmrFI CCNGG 4 cut(s) 358, 1137, 1377, 1527
BmsI GCATC 2 cut(s) 1138, 1301
BpmI CTGGAG 2 cut(s) 336, 809
Bpu10I CCTNAGC 2 cut(s) 1121, 1245
Bpu1102I GCTNAGC 1 cut(s) 1506
BpuEI CTTGAG 1 cut(s) 1034
BpuMI CCSGG 1 cut(s) 358
BsaJI CCNNGG 4 cut(s) 285, 357, 957, 1136
BsaWI WCCGGW 2 cut(s) 148, 1195
Bse118I RCCGGY 1 cut(s) 944
Bse1I ACTGG 1 cut(s) 1363
Bse21I CCTNAGG 1 cut(s) 1263
Bse3DI GCAATG 4 cut(s) 15, 939, 1205, 1436
BseBI CCWGG 3 cut(s) 1137, 1377, 1527
BseDI CCNNGG 4 cut(s) 285, 357, 957, 1136
BseGI GGATG 2 cut(s) 45, 1129
BseMI GCAATG 4 cut(s) 15, 939, 1205, 1436
BseMII CTCAG 5 cut(s) 306, 615, 1254, 1269, 1520
BseNI ACTGG 1 cut(s) 1363
BseRI GAGGAG 5 cut(s) 233, 274, 325, 628, 1280
BseSI GKGCMC 1 cut(s) 1523
BseXI GCAGC 4 cut(s) 17, 581, 771, 1465
BsgI GTGCAG 1 cut(s) 510
Bsh1236I CGCG 2 cut(s) 342, 1412
BshFI GGCC 4 cut(s) 290, 299, 317, 677
BsiHKAI GWGCWC 1 cut(s) 1523
BsiHKCI CYCGRG 1 cut(s) 467
BsiSI CCGG 4 cut(s) 149, 357, 945, 1196
BsmAI GTCTC 4 cut(s) 62, 337, 369, 1402
BsnI GGCC 4 cut(s) 290, 299, 317, 677
BsoBI CYCGRG 1 cut(s) 467
Bsp1286I GDGCHC 2 cut(s) 137, 1523
Bsp1720I GCTNAGC 1 cut(s) 1506
BspACI CCGC 9 cut(s) 342, 458, 641, 719, 772, 986, 1103, 1133, 1410
BspANI GGCC 4 cut(s) 290, 299, 317, 677
BspCNI CTCAG 5 cut(s) 305, 616, 1255, 1270, 1519
BspFNI CGCG 2 cut(s) 342, 1412
BspLI GGNNCC 2 cut(s) 1381, 1408
BspPI GGATC 7 cut(s) 385, 743, 939, 1235, 1253, 1374, 1387
BspTI CTTAAG 2 cut(s) 722, 1150
BsrDI GCAATG 4 cut(s) 15, 939, 1205, 1436
BsrFI RCCGGY 1 cut(s) 944
BsrI ACTGG 1 cut(s) 1363
BssAI RCCGGY 1 cut(s) 944
BssECI CCNNGG 4 cut(s) 285, 357, 957, 1136
BssSI CACGAG 1 cut(s) 108
Bst2BI CACGAG 1 cut(s) 108
Bst2UI CCWGG 3 cut(s) 1137, 1377, 1527
Bst4CI ACNGT 3 cut(s) 19, 165, 635
Bst6I CTCTTC 3 cut(s) 65, 89, 807
BstAFI CTTAAG 2 cut(s) 722, 1150
BstC8I GCNNGC 3 cut(s) 462, 946, 1101
BstDEI CTNAG 7 cut(s) 292, 624, 1121, 1245, 1263, 1278, 1506
BstF5I GGATG 2 cut(s) 45, 1129
BstFNI CGCG 2 cut(s) 342, 1412
BstHHI GCGC 2 cut(s) 964, 1429
BstMAI GTCTC 4 cut(s) 62, 337, 369, 1402
BstMWI GCNNNNNNNGC 4 cut(s) 287, 296, 727, 1126
BstNI CCWGG 3 cut(s) 1137, 1377, 1527
BstNSI RCATGY 2 cut(s) 1348, 1568
BstSCI CCNGG 4 cut(s) 356, 1135, 1375, 1525
BstSFI CTRYAG 1 cut(s) 1401
BstSLI GKGCMC 1 cut(s) 1523
BstUI CGCG 2 cut(s) 342, 1412
BstV1I GCAGC 4 cut(s) 17, 581, 771, 1465
BstX2I RGATCY 6 cut(s) 377, 735, 931, 1240, 1258, 1379
BstYI RGATCY 6 cut(s) 377, 735, 931, 1240, 1258, 1379
Bsu36I CCTNAGG 1 cut(s) 1263
BsuRI GGCC 4 cut(s) 290, 299, 317, 677
BtgZI GCGATG 1 cut(s) 548
BtsCI GGATG 2 cut(s) 45, 1129
BtsIMutI CAGTG 3 cut(s) 15, 300, 948
Cac8I GCNNGC 3 cut(s) 462, 946, 1101
CaiI CAGNNNCTG 1 cut(s) 1142
CfoI GCGC 2 cut(s) 964, 1429
Cfr10I RCCGGY 1 cut(s) 944
Cfr13I GGNCC 4 cut(s) 236, 316, 455, 1529
Csp6I GTAC 1 cut(s) 1568
CviAII CATG 6 cut(s) 263, 607, 847, 1345, 1468, 1565
CviQI GTAC 1 cut(s) 1568
DdeI CTNAG 7 cut(s) 292, 624, 1121, 1245, 1263, 1278, 1506
DraI TTTAAA 2 cut(s) 418, 1273
Eam1104I CTCTTC 3 cut(s) 65, 89, 807
EarI CTCTTC 3 cut(s) 65, 89, 807
EciI GGCGGA 3 cut(s) 656, 1001, 1122
Eco24I GRGCYC 1 cut(s) 137
Eco32I GATATC 1 cut(s) 556
Eco47I GGWCC 3 cut(s) 236, 455, 1529
Eco57I CTGAAG 1 cut(s) 73
Eco81I CCTNAGG 1 cut(s) 1263
Eco88I CYCGRG 1 cut(s) 467
EcoRII CCWGG 3 cut(s) 1135, 1375, 1525
EcoRV GATATC 1 cut(s) 556
EcoT38I GRGCYC 1 cut(s) 137
FaeI CATG 6 cut(s) 266, 610, 850, 1348, 1471, 1568
FalI AAGNNNNNCTT 2 cut(s) 677, 709
FatI CATG 6 cut(s) 262, 606, 846, 1344, 1467, 1564
FauI CCCGC 1 cut(s) 779
FbaI TGATCA 2 cut(s) 12, 603
FblI GTMKAC 1 cut(s) 671
Fnu4HI GCNGC 4 cut(s) 6, 570, 785, 1479
FokI GGATG 2 cut(s) 32, 1116
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 4 cut(s) 6, 570, 785, 1479
FspBI CTAG 4 cut(s) 278, 384, 500, 1388
GlaI GCGC 2 cut(s) 963, 1428
GluI GCNGC 4 cut(s) 6, 570, 785, 1479
GsuI CTGGAG 2 cut(s) 336, 809
HaeIII GGCC 4 cut(s) 290, 299, 317, 677
HapII CCGG 4 cut(s) 149, 357, 945, 1196
HhaI GCGC 2 cut(s) 964, 1429
Hin1II CATG 6 cut(s) 266, 610, 850, 1348, 1471, 1568
Hin6I GCGC 2 cut(s) 962, 1427
HinP1I GCGC 2 cut(s) 962, 1427
HincII GTYRAC 2 cut(s) 22, 1497
HindII GTYRAC 2 cut(s) 22, 1497
HindIII AAGCTT 5 cut(s) 446, 575, 728, 867, 1247
HinfI GANTC 7 cut(s) 104, 362, 648, 668, 796, 1037, 1446
HpaII CCGG 4 cut(s) 149, 357, 945, 1196
HphI GGTGA 3 cut(s) 170, 647, 673
Hpy166II GTNNAC 8 cut(s) 22, 202, 672, 978, 1175, 1465, 1497, 1521
Hpy188I TCNGA 3 cut(s) 132, 625, 653
Hpy8I GTNNAC 8 cut(s) 22, 202, 672, 978, 1175, 1465, 1497, 1521
Hpy99I CGWCG 1 cut(s) 782
HpyAV CCTTC 6 cut(s) 150, 191, 535, 1109, 1356, 1563
HpyCH4III ACNGT 3 cut(s) 19, 165, 635
HpyCH4IV ACGT 1 cut(s) 1157
HpyCH4V TGCA 7 cut(s) 491, 597, 887, 1099, 1129, 1521, 1564
HpyF10VI GCNNNNNNNGC 4 cut(s) 287, 296, 727, 1126
HpyF3I CTNAG 7 cut(s) 292, 624, 1121, 1245, 1263, 1278, 1506
HpySE526I ACGT 1 cut(s) 1157
Hsp92II CATG 6 cut(s) 266, 610, 850, 1348, 1471, 1568
HspAI GCGC 2 cut(s) 962, 1427
KroI GCCGGC 1 cut(s) 944
KroNI GCCGGC 1 cut(s) 946
Ksp22I TGATCA 2 cut(s) 12, 603
LmnI GCTCC 3 cut(s) 355, 403, 988
Lsp1109I GCAGC 4 cut(s) 17, 581, 771, 1465
LweI GCATC 2 cut(s) 1138, 1301
MaeI CTAG 4 cut(s) 278, 384, 500, 1388
MaeII ACGT 1 cut(s) 1157
MaeIII GTNAC 2 cut(s) 74, 344
MflI RGATCY 6 cut(s) 377, 735, 931, 1240, 1258, 1379
MhlI GDGCHC 2 cut(s) 137, 1523
MluCI AATT 2 cut(s) 306, 419
MlyI GAGTC 3 cut(s) 371, 657, 677
MmeI TCCRAC 2 cut(s) 133, 843
MroNI GCCGGC 1 cut(s) 944
MseI TTAA 7 cut(s) 417, 579, 723, 996, 1151, 1218, 1272
MslI CAYNNNNRTG 1 cut(s) 252
MspCI CTTAAG 2 cut(s) 722, 1150
MspI CCGG 4 cut(s) 149, 357, 945, 1196
MspR9I CCNGG 4 cut(s) 358, 1137, 1377, 1527
MssI GTTTAAAC 1 cut(s) 1273
MvaI CCWGG 3 cut(s) 1137, 1377, 1527
MvnI CGCG 2 cut(s) 342, 1412
MwoI GCNNNNNNNGC 4 cut(s) 287, 296, 727, 1126
NaeI GCCGGC 1 cut(s) 946
NciI CCSGG 1 cut(s) 358
NgoMIV GCCGGC 1 cut(s) 944
NlaIII CATG 6 cut(s) 266, 610, 850, 1348, 1471, 1568
NlaIV GGNNCC 2 cut(s) 1381, 1408
NmeAIII GCCGAG 2 cut(s) 266, 938
NmuCI GTSAC 1 cut(s) 344
NspI RCATGY 2 cut(s) 1348, 1568
PaeR7I CTCGAG 1 cut(s) 467
PcsI WCGNNNNNNNCGW 1 cut(s) 115
PdiI GCCGGC 1 cut(s) 946
PfeI GAWTC 4 cut(s) 104, 796, 1037, 1446
PfoI TCCNGGA 1 cut(s) 1375
PkrI GCNGC 4 cut(s) 7, 571, 786, 1480
PleI GAGTC 3 cut(s) 370, 656, 676
PmeI GTTTAAAC 1 cut(s) 1273
PpsI GAGTC 3 cut(s) 370, 656, 676
PsiI TTATAA 1 cut(s) 834
Psp1406I AACGTT 1 cut(s) 1157
Psp6I CCWGG 3 cut(s) 1135, 1375, 1525
PspGI CCWGG 3 cut(s) 1135, 1375, 1525
PspN4I GGNNCC 2 cut(s) 1381, 1408
PspPI GGNCC 4 cut(s) 236, 316, 455, 1529
PspXI VCTCGAGB 1 cut(s) 467
PstNI CAGNNNCTG 1 cut(s) 1142
PsuI RGATCY 6 cut(s) 377, 735, 931, 1240, 1258, 1379
RsaI GTAC 1 cut(s) 1569
RsaNI GTAC 1 cut(s) 1568
RseI CAYNNNNRTG 1 cut(s) 252
SaqAI TTAA 7 cut(s) 417, 579, 723, 996, 1151, 1218, 1272
SatI GCNGC 4 cut(s) 6, 570, 785, 1479
Sau96I GGNCC 4 cut(s) 236, 316, 455, 1529
SchI GAGTC 3 cut(s) 371, 657, 677
ScrFI CCNGG 4 cut(s) 358, 1137, 1377, 1527
SduI GDGCHC 2 cut(s) 137, 1523
SfaNI GCATC 2 cut(s) 1138, 1301
SfcI CTRYAG 1 cut(s) 1401
SfiI GGCCNNNNNGGCC 1 cut(s) 296
Sfr274I CTCGAG 1 cut(s) 467
SinI GGWCC 3 cut(s) 236, 455, 1529
SlaI CTCGAG 1 cut(s) 467
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 4 cut(s) 467, 722, 1013, 1150
SmoI CTYRAG 4 cut(s) 467, 722, 1013, 1150
Sse9I AATT 2 cut(s) 306, 419
SsiI CCGC 9 cut(s) 342, 458, 641, 719, 772, 986, 1103, 1133, 1410
SspMI CTAG 4 cut(s) 278, 384, 500, 1388
StyD4I CCNGG 4 cut(s) 356, 1135, 1375, 1525
TaaI ACNGT 3 cut(s) 19, 165, 635
TaiI ACGT 1 cut(s) 1160
TaqI TCGA 4 cut(s) 468, 552, 777, 1534
TasI AATT 2 cut(s) 306, 419
TfiI GAWTC 4 cut(s) 104, 796, 1037, 1446
Tru1I TTAA 7 cut(s) 417, 579, 723, 996, 1151, 1218, 1272
Tru9I TTAA 7 cut(s) 417, 579, 723, 996, 1151, 1218, 1272
TscAI CASTG 3 cut(s) 22, 300, 955
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 4 cut(s) 5, 569, 784, 1478
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 6 cut(s) 28, 34, 251, 551, 894, 1484
TspGWI ACGGA 2 cut(s) 242, 476
TspRI CASTG 3 cut(s) 22, 300, 955
Vha464I CTTAAG 2 cut(s) 722, 1150
VneI GTGCAC 1 cut(s) 1519
VpaK11BI GGWCC 3 cut(s) 236, 455, 1529
XapI RAATTY 2 cut(s) 306, 419
XceI RCATGY 2 cut(s) 1348, 1568
XhoI CTCGAG 1 cut(s) 467
XmiI GTMKAC 1 cut(s) 671
XspI CTAG 4 cut(s) 278, 384, 500, 1388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.