Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000895

Physical Location & Seq

Genomic Coordinates Forward (+)

2125344 .. 2127832

Gene Structure 2489 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG013000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1545 bp

ATGACTGATTTACAGTACTACCTCCTCTGCTCCGTCCTCTGTTTTCTCTCCACCATCTTCATCAAATCCTTGTTCACCAAACCATCCACAAACAACCCTCCAAGCCCGCCGGCTCTACCAGTCATCGGTCACCTCCACCTCCTCACTTCCTCCTTATCCCAATCATTACACAAACTCTCCACCAAGTACGGCCCTCTCCTCCTCGTCCGGTTCGGCGCCTCTCGGATGCTCGTAGTTTCATCTGCCTCCATGGCCGCCGAAATCTTCAAAACACATGACCTCACTTTTGCTTCTCGACCCTCCTTTGCTTTTGCAGACGACTTGCCCTACAAAAACTTGGGTTTCTTTGCCACCCCATATGGTGACTACTGGAGGTTCATGAAGAAGCTCTGCATGACGGAACTGCTCTCTCCCAAGCAGATTGAACGGTCACGTTCCATCCGGCAGGAAGAGATTGCAAGGTTCTTGAAGAAGATGATGGAGTGTGCTGAGAGAAAACAGAGGGTTGATGTGGGTGCTGAGCTTATGAGGCTCACAAACAACAGTATATGCAGGATGGCCATGAGCACCAGTTGCTCAGAGAATGGTGATGAAGCTGAGAAAATCAGGGAGTTGGTGAAGGAATCATTTGAACTGGCCGCAAAGGTATGTTTTGGGGATGTGTTGGGTCCGCTGAAGAGAGTGGGATTCTGGGTTTATGGAAAGCAGCTCATAGATGTGACCATGGGGTATGATAGGCTTTTAGAGGGGATGCTGAAGCAGCATGAAGAGAGAGCAGAGAGAGAGGGCTGGGATAGAGAAGACAAGGATTTGATGGATATTCTATTGAAGGCATATCAGGATGATCAAGCTGAGGTTCAGATCACCAGAACTCATGTCAAGGCTTTCTTGCTTGATCTTTTCATTGGAGGCACTGCTACCACAGCAGAGGCCATGCAATGGGGAGTAGCTGAGCTCATAAACCATCCAGACATATTCAACAAGGTCAGGGAGGAGATGAAAACAGTTGTTGGTAGCAGACTAGTTGAGGAATCAGATGTTGCAAACCTCCCTTACTTGCAGGCAGTGATAAAAGAAACACTGAGACTACACCCACCAGTTCCTTTGTCGACAAGAGAAAGCCGCGAAACTTGTAAAATAAAAGAGTTTGATATACCAGAAAAGACTTCGGTGGCAATCAACCAGTATGCAATAATGAGAGATCCAGAGTTATGGGACAATCCAGATGAGTTTAGGCCAGAGAGGTTCTTGGTTTCCACTAAAGAGAAATATGAATCAGAACTTGATCAGAATGAAAGTAGAGGACATAACTTTCAATATGTCCCGTTTGGATCGGGAAGGAGAAGGTGCCCAGGTTCAAATTTGGCAACCATCTTGTTGAATACTTCAATTGCTGCCATGGTTCAATGCATTGATTGGAAAATTGGAGATGGAAATGAGGGTAGGGTCAATATGGAAGTTGGAGCGGGCATGTCTTTGCCCATGGCTCACCCACTTGTAGTTTTGCCTGTTGATCACTTCAACCCATTTGCTTCTTCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009506 GO:0009605 GO:0009606 GO:0009607 GO:0009620 GO:0009628 GO:0009629 GO:0009630 GO:0009812 GO:0009958 GO:0009987 GO:0010683 GO:0012505 GO:0016020 GO:0016491 GO:0016627 GO:0016705 GO:0016709 GO:0019748 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042214 GO:0042440 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046246 GO:0048364 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051552 GO:0051554 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071704 GO:0080003 GO:0080004 GO:0098542 GO:0099402 GO:1901360 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00980 ko01100 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00980 map01100 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

514

Amino Acids

58.3

Weight (kDa)

6.07

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	33 - 480	6.5e-97	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28430 AT1G50520 AT1G50560 AT2G05180 AT2G14100 AT2G27000 AT2G27010 AT3G20080 AT3G20080 AT3G20080 AT3G20080 AT3G20080 AT3G20080 AT3G20090 AT3G20090 AT3G20100 AT3G20110 AT3G20120 AT3G20120 AT3G20120 AT3G20120 AT3G20130 AT3G20130 AT3G20140 AT3G20935 AT3G20940 AT3G20950 AT3G20960 AT3G20960 AT3G32047 AT4G15330 AT4G15330 AT4G15350 AT4G15360 AT4G15380 AT5G42580 AT5G47990
fragaria_vesca	FvH4_7g00640
malus_domestica	MD07G1006100.v1.1
prunus_persica	Prupe.2G008400_v2.0.a1 Prupe.2G008900_v2.0.a1 Prupe.4G287500_v2.0.a1
pyrus_communis	pycom07g00490
rosa_chinensis	RchiOBHm_Chr1g0314821 RchiOBHm_Chr1g0314871
rosa_laevigata	RLG00000030759 RLG00000030762
rosa_multiflora	Rmu_sc0002833.1_g000040 Rmu_sc0002833.1_g000046 Rmu_sc0010489.1_g000008 Rmu_sc0010489.1_g000015
rosa_roxburghii	Rroxscaffold_4G00331770 Rroxscaffold_4G00331860
rosa_rugosa	Rorug01G0002100 Rorug01G0002600
rosa_samantha	Rh1AG013000 Rh1AG013500 Rh1BG004600 Rh1BG005000 Rh1CG011500 Rh1CG011800 Rh1DG006300 Rh1DG006800
rosa_wichuraiana	Rw1G000560 Rw1G000610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	215, 1347
AccB7I	CCANNNNNTGG	1 cut(s)	939
AccBSI	CCGCTC	1 cut(s)	1466
AccI	GTMKAC	1 cut(s)	1109
AccII	CGCG	1 cut(s)	1125
AciI	CCGC	6 cut(s)	107, 255, 639, 671, 1123, 1466
AclWI	GGATC	2 cut(s)	1196, 1339
AcoI	YGGCCR	3 cut(s)	252, 558, 636
AcsI	RAATTY	1 cut(s)	1360
AcuI	CTGAAG	2 cut(s)	695, 776
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	2 cut(s)	17, 188
AfiI	CCNNNNNNNGG	2 cut(s)	125, 939
AhlI	ACTAGT	1 cut(s)	1021
AjnI	CCWGG	1 cut(s)	1351
AluBI	AGCT	7 cut(s)	388, 523, 596, 709, 851, 950, 955
AluI	AGCT	7 cut(s)	388, 523, 596, 709, 851, 950, 955
Alw21I	GWGCWC	2 cut(s)	569, 957
Alw26I	GTCTC	1 cut(s)	1078
AlwI	GGATC	2 cut(s)	1196, 1339
AoxI	GGCC	6 cut(s)	190, 252, 558, 636, 930, 1235
ApeKI	GCWGC	3 cut(s)	706, 760, 1394
ApoI	RAATTY	1 cut(s)	1360
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	2 cut(s)	191, 668
AsuHPI	GGTGA	7 cut(s)	67, 122, 374, 599, 628, 856, 1481
AvaII	GGWCC	1 cut(s)	668
BaeGI	GKGCMC	1 cut(s)	1352
BalI	TGGCCA	1 cut(s)	560
BanI	GGYRCC	2 cut(s)	215, 1347
BanII	GRGCYC	1 cut(s)	957
BbsI	GAAGAC	1 cut(s)	807
Bbv12I	GWGCWC	2 cut(s)	569, 957
BbvCI	CCTCAGC	1 cut(s)	852
BbvI	GCAGC	3 cut(s)	718, 772, 1381
BccI	CCATC	9 cut(s)	62, 91, 446, 472, 550, 808, 972, 1379, 1424
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	1353
BclI	TGATCA	3 cut(s)	844, 1285, 1513
BcoDI	GTCTC	1 cut(s)	1078
BcuI	ACTAGT	1 cut(s)	1021
BfaI	CTAG	1 cut(s)	1022
BfoI	RGCGCY	1 cut(s)	219
BglI	GCCNNNNNGGC	1 cut(s)	251
BisI	GCNGC	6 cut(s)	255, 639, 707, 761, 1123, 1395
BlpI	GCTNAGC	2 cut(s)	519, 951
BlsI	GCNGC	6 cut(s)	256, 640, 708, 762, 1124, 1396
BmcAI	AGTACT	1 cut(s)	17
Bme1390I	CCNGG	1 cut(s)	1353
Bme18I	GGWCC	1 cut(s)	668
BmgT120I	GGNCC	2 cut(s)	191, 668
BmiI	GGNNCC	3 cut(s)	217, 669, 1349
BmrFI	CCNGG	1 cut(s)	1353
BmsI	GCATC	2 cut(s)	216, 741
BpiI	GAAGAC	1 cut(s)	807
BpmI	CTGGAG	1 cut(s)	391
Bpu10I	CCTNAGC	1 cut(s)	852
Bpu1102I	GCTNAGC	2 cut(s)	519, 951
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	5 cut(s)	249, 723, 1351, 1398, 1482
BsaWI	WCCGGW	1 cut(s)	207
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 939
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	6 cut(s)	119, 374, 570, 639, 1097, 1183
Bse3DI	GCAATG	1 cut(s)	944
BseBI	CCWGG	1 cut(s)	1353
BseDI	CCNNGG	5 cut(s)	249, 723, 1351, 1398, 1482
BseGI	GGATG	8 cut(s)	83, 231, 438, 561, 664, 756, 847, 964
BseLI	CCNNNNNNNGG	2 cut(s)	125, 939
BseMI	GCAATG	1 cut(s)	944
BseMII	CTCAG	7 cut(s)	480, 510, 588, 591, 843, 942, 1073
BseNI	ACTGG	6 cut(s)	119, 374, 570, 639, 1097, 1183
BseRI	GAGGAG	5 cut(s)	14, 131, 188, 191, 1007
BseSI	GKGCMC	1 cut(s)	1352
BseXI	GCAGC	3 cut(s)	718, 772, 1381
BseYI	CCCAGC	1 cut(s)	789
Bsh1236I	CGCG	1 cut(s)	1125
BshFI	GGCC	6 cut(s)	192, 254, 560, 638, 932, 1237
BshNI	GGYRCC	2 cut(s)	215, 1347
BsiHKAI	GWGCWC	2 cut(s)	569, 957
BsiSI	CCGG	3 cut(s)	110, 208, 442
BslFI	GGGAC	2 cut(s)	1229, 1307
BslI	CCNNNNNNNGG	2 cut(s)	125, 939
BsmAI	GTCTC	1 cut(s)	1078
BsmFI	GGGAC	2 cut(s)	1229, 1307
BsnI	GGCC	6 cut(s)	192, 254, 560, 638, 932, 1237
Bsp1286I	GDGCHC	3 cut(s)	569, 957, 1352
Bsp143I	GATC	7 cut(s)	844, 861, 895, 1201, 1285, 1331, 1513
Bsp1720I	GCTNAGC	2 cut(s)	519, 951
Bsp19I	CCATGG	4 cut(s)	249, 723, 1398, 1482
BspACI	CCGC	6 cut(s)	107, 255, 639, 671, 1123, 1466
BspANI	GGCC	6 cut(s)	192, 254, 560, 638, 932, 1237
BspCNI	CTCAG	7 cut(s)	481, 511, 589, 590, 844, 943, 1074
BspFNI	CGCG	1 cut(s)	1125
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	3 cut(s)	217, 669, 1349
BspPI	GGATC	2 cut(s)	1196, 1339
BspT107I	GGYRCC	2 cut(s)	215, 1347
BsrBI	CCGCTC	1 cut(s)	1466
BsrDI	GCAATG	1 cut(s)	944
BsrFI	RCCGGY	1 cut(s)	109
BsrI	ACTGG	6 cut(s)	119, 374, 570, 639, 1097, 1183
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	5 cut(s)	249, 723, 1351, 1398, 1482
BssMI	GATC	7 cut(s)	844, 861, 895, 1201, 1285, 1331, 1513
BssNI	GRCGYC	1 cut(s)	216
BssT1I	CCWWGG	4 cut(s)	249, 723, 1398, 1482
Bst2UI	CCWGG	1 cut(s)	1353
Bst4CI	ACNGT	4 cut(s)	15, 429, 545, 1006
Bst6I	CTCTTC	3 cut(s)	444, 671, 762
BstACI	GRCGYC	1 cut(s)	216
BstAPI	GCANNNNNTGC	1 cut(s)	573
BstC8I	GCNNGC	4 cut(s)	107, 111, 1062, 1468
BstDEI	CTNAG	7 cut(s)	489, 519, 577, 597, 852, 951, 1082
BstDSI	CCRYGG	4 cut(s)	249, 723, 1398, 1482
BstEII	GGTNACC	1 cut(s)	128
BstF5I	GGATG	8 cut(s)	83, 231, 438, 561, 664, 756, 847, 964
BstFNI	CGCG	1 cut(s)	1125
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	7 cut(s)	847, 864, 898, 1204, 1288, 1334, 1516
BstMAI	GTCTC	1 cut(s)	1078
BstMBI	GATC	7 cut(s)	844, 861, 895, 1201, 1285, 1331, 1513
BstMWI	GCNNNNNNNGC	5 cut(s)	251, 529, 573, 760, 923
BstNI	CCWGG	1 cut(s)	1353
BstNSI	RCATGY	1 cut(s)	1474
BstPI	GGTNACC	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	1351
BstSLI	GKGCMC	1 cut(s)	1352
BstUI	CGCG	1 cut(s)	1125
BstV1I	GCAGC	3 cut(s)	718, 772, 1381
BstV2I	GAAGAC	1 cut(s)	807
BstX2I	RGATCY	1 cut(s)	1201
BstXI	CCANNNNNNTGG	1 cut(s)	1212
BstYI	RGATCY	1 cut(s)	1201
BsuRI	GGCC	6 cut(s)	192, 254, 560, 638, 932, 1237
BtgI	CCRYGG	4 cut(s)	249, 723, 1398, 1482
BtsCI	GGATG	8 cut(s)	83, 231, 438, 561, 664, 756, 847, 964
BtsI	GCAGTG	2 cut(s)	912, 1071
BtsIMutI	CAGTG	3 cut(s)	912, 1071, 1079
Cac8I	GCNNGC	4 cut(s)	107, 111, 1062, 1468
CciI	TCATGA	1 cut(s)	378
CfoI	GCGC	1 cut(s)	218
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	2 cut(s)	191, 668
Csp6I	GTAC	2 cut(s)	16, 187
CviQI	GTAC	2 cut(s)	16, 187
DdeI	CTNAG	7 cut(s)	489, 519, 577, 597, 852, 951, 1082
DinI	GGCGCC	1 cut(s)	217
DpnI	GATC	7 cut(s)	846, 863, 897, 1203, 1287, 1333, 1515
DpnII	GATC	7 cut(s)	844, 861, 895, 1201, 1285, 1331, 1513
EaeI	YGGCCR	3 cut(s)	252, 558, 636
Eam1104I	CTCTTC	3 cut(s)	444, 671, 762
EarI	CTCTTC	3 cut(s)	444, 671, 762
Ecl136II	GAGCTC	1 cut(s)	955
Eco130I	CCWWGG	4 cut(s)	249, 723, 1398, 1482
Eco24I	GRGCYC	1 cut(s)	957
Eco47I	GGWCC	1 cut(s)	668
Eco53kI	GAGCTC	1 cut(s)	955
Eco57I	CTGAAG	2 cut(s)	695, 776
Eco91I	GGTNACC	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	955
EcoO65I	GGTNACC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	1351
EcoT14I	CCWWGG	4 cut(s)	249, 723, 1398, 1482
EcoT22I	ATGCAT	1 cut(s)	1412
EcoT38I	GRGCYC	1 cut(s)	957
EgeI	GGCGCC	1 cut(s)	217
EheI	GGCGCC	1 cut(s)	217
ErhI	CCWWGG	4 cut(s)	249, 723, 1398, 1482
FalI	AAGNNNNNCTT	2 cut(s)	872, 904
FaqI	GGGAC	2 cut(s)	1229, 1307
FauI	CCCGC	2 cut(s)	114, 1459
FauNDI	CATATG	1 cut(s)	358
FbaI	TGATCA	3 cut(s)	844, 1285, 1513
FblI	GTMKAC	1 cut(s)	1109
Fnu4HI	GCNGC	6 cut(s)	255, 639, 707, 761, 1123, 1395
FokI	GGATG	8 cut(s)	70, 238, 425, 568, 671, 763, 854, 951
FriOI	GRGCYC	1 cut(s)	957
Fsp4HI	GCNGC	6 cut(s)	255, 639, 707, 761, 1123, 1395
FspBI	CTAG	1 cut(s)	1022
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	6 cut(s)	255, 639, 707, 761, 1123, 1395
GsaI	CCCAGC	1 cut(s)	793
GsuI	CTGGAG	1 cut(s)	391
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	6 cut(s)	192, 254, 560, 638, 932, 1237
HapII	CCGG	3 cut(s)	110, 208, 442
HhaI	GCGC	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	216
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	1 cut(s)	1110
HindII	GTYRAC	1 cut(s)	1110
HinfI	GANTC	4 cut(s)	623, 687, 1031, 1274
HpaII	CCGG	3 cut(s)	110, 208, 442
HphI	GGTGA	7 cut(s)	67, 122, 374, 599, 628, 856, 1481
Hpy166II	GTNNAC	2 cut(s)	75, 1110
Hpy188I	TCNGA	6 cut(s)	225, 580, 861, 1036, 1279, 1290
Hpy188III	TCNNGA	8 cut(s)	294, 379, 466, 839, 968, 1205, 1223, 1335
Hpy8I	GTNNAC	2 cut(s)	75, 1110
HpyAV	CCTTC	4 cut(s)	613, 823, 1332, 1338
HpyCH4III	ACNGT	4 cut(s)	15, 429, 545, 1006
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	9 cut(s)	314, 393, 458, 552, 937, 1043, 1060, 1190, 1410
HpyF10VI	GCNNNNNNNGC	5 cut(s)	251, 529, 573, 760, 923
HpyF3I	CTNAG	7 cut(s)	489, 519, 577, 597, 852, 951, 1082
HpySE526I	ACGT	1 cut(s)	433
Hsp92I	GRCGYC	1 cut(s)	216
HspAI	GCGC	1 cut(s)	216
KasI	GGCGCC	1 cut(s)	215
KroI	GCCGGC	1 cut(s)	109
KroNI	GCCGGC	1 cut(s)	111
Ksp22I	TGATCA	3 cut(s)	844, 1285, 1513
Kzo9I	GATC	7 cut(s)	844, 861, 895, 1201, 1285, 1331, 1513
LmnI	GCTCC	2 cut(s)	35, 1463
Lsp1109I	GCAGC	3 cut(s)	718, 772, 1381
LweI	GCATC	2 cut(s)	216, 741
MaeI	CTAG	1 cut(s)	1022
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	4 cut(s)	128, 362, 429, 718
MalI	GATC	7 cut(s)	846, 863, 897, 1203, 1287, 1333, 1515
MbiI	CCGCTC	1 cut(s)	1466
MboI	GATC	7 cut(s)	844, 861, 895, 1201, 1285, 1331, 1513
MfeI	CAATTG	1 cut(s)	1389
MflI	RGATCY	1 cut(s)	1201
MhlI	GDGCHC	3 cut(s)	569, 957, 1352
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	3 cut(s)	1360, 1389, 1422
MluNI	TGGCCA	1 cut(s)	560
Mly113I	GGCGCC	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	1441
Mox20I	TGGCCA	1 cut(s)	560
Mph1103I	ATGCAT	1 cut(s)	1412
MroNI	GCCGGC	1 cut(s)	109
MscI	TGGCCA	1 cut(s)	560
MslI	CAYNNNNRTG	1 cut(s)	716
Msp20I	TGGCCA	1 cut(s)	560
MspA1I	CMGCKG	1 cut(s)	673
MspI	CCGG	3 cut(s)	110, 208, 442
MspR9I	CCNGG	1 cut(s)	1353
MunI	CAATTG	1 cut(s)	1389
MvaI	CCWGG	1 cut(s)	1353
MvnI	CGCG	1 cut(s)	1125
MwoI	GCNNNNNNNGC	5 cut(s)	251, 529, 573, 760, 923
NaeI	GCCGGC	1 cut(s)	111
NarI	GGCGCC	1 cut(s)	216
NcoI	CCATGG	4 cut(s)	249, 723, 1398, 1482
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	7 cut(s)	844, 861, 895, 1201, 1285, 1331, 1513
NgoMIV	GCCGGC	1 cut(s)	109
NlaIV	GGNNCC	3 cut(s)	217, 669, 1349
NmuCI	GTSAC	4 cut(s)	128, 362, 429, 718
NsiI	ATGCAT	1 cut(s)	1412
NspI	RCATGY	1 cut(s)	1474
PagI	TCATGA	1 cut(s)	378
PdiI	GCCGGC	1 cut(s)	111
PfeI	GAWTC	4 cut(s)	623, 687, 1031, 1274
PflMI	CCANNNNNTGG	1 cut(s)	939
PkrI	GCNGC	6 cut(s)	256, 640, 708, 762, 1124, 1396
PluTI	GGCGCC	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	957
Psp6I	CCWGG	1 cut(s)	1351
PspEI	GGTNACC	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	789
PspGI	CCWGG	1 cut(s)	1351
PspN4I	GGNNCC	3 cut(s)	217, 669, 1349
PspPI	GGNCC	2 cut(s)	191, 668
PsuI	RGATCY	1 cut(s)	1201
RsaI	GTAC	2 cut(s)	17, 188
RsaNI	GTAC	2 cut(s)	16, 187
RseI	CAYNNNNRTG	1 cut(s)	716
SacI	GAGCTC	1 cut(s)	957
SalI	GTCGAC	1 cut(s)	1108
SatI	GCNGC	6 cut(s)	255, 639, 707, 761, 1123, 1395
Sau3AI	GATC	7 cut(s)	844, 861, 895, 1201, 1285, 1331, 1513
Sau96I	GGNCC	2 cut(s)	191, 668
ScaI	AGTACT	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	1353
SduI	GDGCHC	3 cut(s)	569, 957, 1352
SfaNI	GCATC	2 cut(s)	216, 741
SfoI	GGCGCC	1 cut(s)	217
SinI	GGWCC	1 cut(s)	668
SmiMI	CAYNNNNRTG	1 cut(s)	716
SpeI	ACTAGT	1 cut(s)	1021
Sse9I	AATT	3 cut(s)	1360, 1389, 1422
SsiI	CCGC	6 cut(s)	107, 255, 639, 671, 1123, 1466
SspDI	GGCGCC	1 cut(s)	215
SspMI	CTAG	1 cut(s)	1022
SstI	GAGCTC	1 cut(s)	957
StyD4I	CCNGG	1 cut(s)	1351
StyI	CCWWGG	4 cut(s)	249, 723, 1398, 1482
TaaI	ACNGT	4 cut(s)	15, 429, 545, 1006
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	2 cut(s)	295, 1109
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	3 cut(s)	1360, 1389, 1422
TatI	WGTACW	1 cut(s)	15
TauI	GCSGC	3 cut(s)	257, 641, 1125
TfiI	GAWTC	4 cut(s)	623, 687, 1031, 1274
TscAI	CASTG	3 cut(s)	919, 1071, 1086
TseFI	GTSAC	4 cut(s)	128, 362, 429, 718
TseI	GCWGC	3 cut(s)	706, 760, 1394
Tsp45I	GTSAC	4 cut(s)	128, 362, 429, 718
TspGWI	ACGGA	2 cut(s)	22, 413
TspRI	CASTG	3 cut(s)	919, 1071, 1086
Van91I	CCANNNNNTGG	1 cut(s)	939
VpaK11BI	GGWCC	1 cut(s)	668
XapI	RAATTY	1 cut(s)	1360
XceI	RCATGY	1 cut(s)	1474
XmiI	GTMKAC	1 cut(s)	1109
XspI	CTAG	1 cut(s)	1022
ZrmI	AGTACT	1 cut(s)	17
Zsp2I	ATGCAT	1 cut(s)	1412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.