Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0000895

Physical Location & Seq

Genomic Coordinates Forward (+)

25198220 .. 25199336

Gene Structure 1117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G287500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCTATGAGCACTAGCTGTTCAGAGAATGGTGAGGAAGCTGAAAAAATCAGGGAGTTGGTAAAAGAATCATATGAGTTGGCTGCAAAGGTTTGTTTTGGGGATGTGTTGGGCCCACTGAAGAGGTTGGGTTCTGGGTTTTATGGGAAGCAGCTCGTGGATGTGACCATGGGGTATGATAAACTTTTGGAGTGGATGCTGAAGCAGCATGAAGAGAGAGCAGAGAGAAATGGTTGGGATAGAGAAGATAAAGATTTGATGGATATACTATTGAAGGCCTATCAAGATGACAAAGCCGAGGTCAAGATTTCCAGAACTCATCAGAGGCCATGCAATGGGCTCATCAACCATCCCGACATATTCAACAAGCTCAGGGTGGAGATAAAATCGGTTGTTGGTAGTAGACTAGTTGAGGAATCGGATGTTGGAAACCTACCCTACTTGCAGGCAGTGATAAAAGAAACACTAAGATTACACCCACCAGTGCCTTTGTCAACAAGAGAGAGAGCCGCCAAGCTTTATGCAATAATGAGAGATCCAGAGTTATGGGACAATCCAGATGACTTTAGGCCAGAGAGGTTTTTGTCTCCTGAAGAGAAAGCAGATGGGGAAATGAATCAGAATGAGACCAGAGGACAGAATTTTCAATACGTTCCATTCGGATCGGGAAGGAGAAGGTGTCCTGGCTCGAATTTGGCAACCATCTTGTTGAATACTTCAATTGCTGCCATGGTTCAATGCTTTGATTGGAAAGTTGAAGATGGAAATGAGGGTAAGGTTAATATGCAAGTTGGCGCAGGCATGTCTTTGCCCATGGCTCACCCACTTATACTTTTACCTGTTGATCACTTCAACCCATTTGCTTCTTCAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009506 GO:0009605 GO:0009606 GO:0009607 GO:0009620 GO:0009628 GO:0009629 GO:0009630 GO:0009812 GO:0009958 GO:0009987 GO:0010683 GO:0012505 GO:0016020 GO:0016491 GO:0016627 GO:0016705 GO:0016709 GO:0019748 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042214 GO:0042440 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046246 GO:0048364 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051552 GO:0051554 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071704 GO:0080003 GO:0080004 GO:0098542 GO:0099402 GO:1901360 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00980 ko01100 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00980 map01100 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

292

Amino Acids

32.95

Weight (kDa)

5.42

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28430 AT1G50520 AT1G50560 AT2G05180 AT2G14100 AT2G27000 AT2G27010 AT3G20080 AT3G20080 AT3G20080 AT3G20080 AT3G20080 AT3G20080 AT3G20090 AT3G20090 AT3G20100 AT3G20110 AT3G20120 AT3G20120 AT3G20120 AT3G20120 AT3G20130 AT3G20130 AT3G20140 AT3G20935 AT3G20940 AT3G20950 AT3G20960 AT3G20960 AT3G32047 AT4G15330 AT4G15330 AT4G15350 AT4G15360 AT4G15380 AT5G42580 AT5G47990
fragaria_vesca	FvH4_7g00640
malus_domestica	MD07G1006100.v1.1
prunus_persica	Prupe.2G008400_v2.0.a1 Prupe.2G008900_v2.0.a1 Prupe.4G287500_v2.0.a1
pyrus_communis	pycom07g00490
rosa_chinensis	RchiOBHm_Chr1g0314821 RchiOBHm_Chr1g0314871
rosa_laevigata	RLG00000030759 RLG00000030762
rosa_multiflora	Rmu_sc0002833.1_g000040 Rmu_sc0002833.1_g000046 Rmu_sc0010489.1_g000008 Rmu_sc0010489.1_g000015
rosa_roxburghii	Rroxscaffold_4G00331770 Rroxscaffold_4G00331860
rosa_rugosa	Rorug01G0002100 Rorug01G0002600
rosa_samantha	Rh1AG013000 Rh1AG013500 Rh1BG004600 Rh1BG005000 Rh1CG011500 Rh1CG011800 Rh1DG006300 Rh1DG006800
rosa_wichuraiana	Rw1G000560 Rw1G000610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	403
AciI	CCGC	1 cut(s)	510
AclWI	GGATC	2 cut(s)	530, 670
AcsI	RAATTY	2 cut(s)	640, 691
AcuI	CTGAAG	3 cut(s)	140, 221, 612
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	9 cut(s)	274, 364, 647, 712, 720, 737, 758, 853, 870
AhlI	ACTAGT	1 cut(s)	406
AjnI	CCWGG	1 cut(s)	682
AjuI	GAANNNNNNNTTGG	2 cut(s)	408, 440
AluBI	AGCT	5 cut(s)	18, 41, 154, 370, 517
AluI	AGCT	5 cut(s)	18, 41, 154, 370, 517
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	2 cut(s)	591, 620
AlwI	GGATC	2 cut(s)	530, 670
AoxI	GGCC	4 cut(s)	112, 276, 326, 569
ApaI	GGGCCC	1 cut(s)	116
ApeKI	GCWGC	4 cut(s)	83, 151, 205, 725
ApoI	RAATTY	2 cut(s)	640, 691
ArsI	GACNNNNNNTTYG	2 cut(s)	285, 317
AspLEI	GCGC	1 cut(s)	797
AspS9I	GGNCC	2 cut(s)	112, 113
AsuHPI	GGTGA	2 cut(s)	44, 812
BaeGI	GKGCMC	1 cut(s)	116
BanII	GRGCYC	2 cut(s)	116, 342
BauI	CACGAG	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	4 cut(s)	70, 163, 217, 712
BccI	CCATC	5 cut(s)	253, 357, 599, 710, 755
BciT130I	CCWGG	1 cut(s)	684
BclI	TGATCA	1 cut(s)	844
BcoDI	GTCTC	2 cut(s)	591, 620
BcuI	ACTAGT	1 cut(s)	406
BfaI	CTAG	2 cut(s)	15, 407
BisI	GCNGC	5 cut(s)	84, 152, 206, 510, 726
BlsI	GCNGC	5 cut(s)	85, 153, 207, 511, 727
Bme1390I	CCNGG	1 cut(s)	684
BmgT120I	GGNCC	2 cut(s)	112, 113
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	1 cut(s)	684
BmsI	GCATC	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	4 cut(s)	168, 297, 729, 813
BsaXI	ACNNNNNCTCC	2 cut(s)	664, 694
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	482
Bse3DI	GCAATG	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	684
BseDI	CCNNGG	4 cut(s)	168, 297, 729, 813
BseGI	GGATG	5 cut(s)	109, 166, 201, 349, 427
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	385
BseNI	ACTGG	1 cut(s)	482
BseSI	GKGCMC	1 cut(s)	116
BseXI	GCAGC	4 cut(s)	70, 163, 217, 712
BshFI	GGCC	4 cut(s)	114, 278, 328, 571
BsiHKAI	GWGCWC	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	2 cut(s)	591, 620
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	4 cut(s)	114, 278, 328, 571
Bso31I	GGTCTC	1 cut(s)	620
Bsp120I	GGGCCC	1 cut(s)	112
Bsp1286I	GDGCHC	3 cut(s)	14, 116, 342
Bsp143I	GATC	3 cut(s)	535, 662, 844
Bsp19I	CCATGG	3 cut(s)	168, 729, 813
BspACI	CCGC	1 cut(s)	510
BspANI	GGCC	4 cut(s)	114, 278, 328, 571
BspCNI	CTCAG	1 cut(s)	384
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	2 cut(s)	530, 670
BspTNI	GGTCTC	1 cut(s)	620
BsrDI	GCAATG	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	482
BssECI	CCNNGG	4 cut(s)	168, 297, 729, 813
BssMI	GATC	3 cut(s)	535, 662, 844
BssSI	CACGAG	1 cut(s)	155
BssT1I	CCWWGG	3 cut(s)	168, 729, 813
Bst2BI	CACGAG	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	684
Bst6I	CTCTTC	3 cut(s)	116, 207, 588
BstC8I	GCNNGC	2 cut(s)	447, 799
BstDEI	CTNAG	2 cut(s)	371, 467
BstDSI	CCRYGG	3 cut(s)	168, 729, 813
BstF5I	GGATG	5 cut(s)	109, 166, 201, 349, 427
BstHHI	GCGC	1 cut(s)	797
BstKTI	GATC	3 cut(s)	538, 665, 847
BstMAI	GTCTC	2 cut(s)	591, 620
BstMBI	GATC	3 cut(s)	535, 662, 844
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstNI	CCWGG	1 cut(s)	684
BstNSI	RCATGY	1 cut(s)	805
BstSCI	CCNGG	1 cut(s)	682
BstSLI	GKGCMC	1 cut(s)	116
BstV1I	GCAGC	4 cut(s)	70, 163, 217, 712
BstX2I	RGATCY	1 cut(s)	535
BstXI	CCANNNNNNTGG	1 cut(s)	546
BstYI	RGATCY	1 cut(s)	535
BsuRI	GGCC	4 cut(s)	114, 278, 328, 571
BtgI	CCRYGG	3 cut(s)	168, 729, 813
BtsCI	GGATG	5 cut(s)	109, 166, 201, 349, 427
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	3 cut(s)	116, 456, 489
Cac8I	GCNNGC	2 cut(s)	447, 799
CfoI	GCGC	1 cut(s)	797
Cfr13I	GGNCC	2 cut(s)	112, 113
CviAII	CATG	6 cut(s)	169, 209, 330, 730, 802, 814
DdeI	CTNAG	2 cut(s)	371, 467
DpnI	GATC	3 cut(s)	537, 664, 846
DpnII	GATC	3 cut(s)	535, 662, 844
Eam1104I	CTCTTC	3 cut(s)	116, 207, 588
EarI	CTCTTC	3 cut(s)	116, 207, 588
Eco130I	CCWWGG	3 cut(s)	168, 729, 813
Eco147I	AGGCCT	1 cut(s)	278
Eco24I	GRGCYC	2 cut(s)	116, 342
Eco31I	GGTCTC	1 cut(s)	620
Eco57I	CTGAAG	3 cut(s)	140, 221, 612
EcoRII	CCWGG	1 cut(s)	682
EcoT14I	CCWWGG	3 cut(s)	168, 729, 813
EcoT38I	GRGCYC	2 cut(s)	116, 342
ErhI	CCWWGG	3 cut(s)	168, 729, 813
FaeI	CATG	6 cut(s)	172, 212, 333, 733, 805, 817
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	6 cut(s)	168, 208, 329, 729, 801, 813
FauNDI	CATATG	1 cut(s)	73
FbaI	TGATCA	1 cut(s)	844
FblI	GTMKAC	1 cut(s)	403
Fnu4HI	GCNGC	5 cut(s)	84, 152, 206, 510, 726
FokI	GGATG	5 cut(s)	116, 173, 208, 336, 434
FriOI	GRGCYC	2 cut(s)	116, 342
Fsp4HI	GCNGC	5 cut(s)	84, 152, 206, 510, 726
FspBI	CTAG	2 cut(s)	15, 407
GlaI	GCGC	1 cut(s)	796
GluI	GCNGC	5 cut(s)	84, 152, 206, 510, 726
HaeIII	GGCC	4 cut(s)	114, 278, 328, 571
HhaI	GCGC	1 cut(s)	797
Hin1II	CATG	6 cut(s)	172, 212, 333, 733, 805, 817
Hin6I	GCGC	1 cut(s)	795
HinP1I	GCGC	1 cut(s)	795
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	3 cut(s)	68, 416, 616
HphI	GGTGA	2 cut(s)	44, 812
Hpy166II	GTNNAC	2 cut(s)	404, 495
Hpy188I	TCNGA	5 cut(s)	25, 324, 421, 621, 662
Hpy188III	TCNNGA	8 cut(s)	284, 304, 312, 353, 539, 557, 590, 666
Hpy8I	GTNNAC	2 cut(s)	404, 495
HpyAV	CCTTC	3 cut(s)	268, 663, 669
HpyCH4IV	ACGT	1 cut(s)	651
HpyCH4V	TGCA	5 cut(s)	86, 333, 445, 524, 787
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HpyF3I	CTNAG	2 cut(s)	371, 467
HpySE526I	ACGT	1 cut(s)	651
Hsp92II	CATG	6 cut(s)	172, 212, 333, 733, 805, 817
HspAI	GCGC	1 cut(s)	795
Ksp22I	TGATCA	1 cut(s)	844
Kzo9I	GATC	3 cut(s)	535, 662, 844
Lsp1109I	GCAGC	4 cut(s)	70, 163, 217, 712
LweI	GCATC	1 cut(s)	186
MaeI	CTAG	2 cut(s)	15, 407
MaeII	ACGT	1 cut(s)	651
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	3 cut(s)	537, 664, 846
MboI	GATC	3 cut(s)	535, 662, 844
MboII	GAAGA	6 cut(s)	133, 224, 257, 605, 770, 858
MfeI	CAATTG	1 cut(s)	720
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	3 cut(s)	14, 116, 342
MluCI	AATT	3 cut(s)	640, 691, 720
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	8 cut(s)	28, 117, 292, 318, 406, 570, 626, 763
MseI	TTAA	1 cut(s)	780
MspR9I	CCNGG	1 cut(s)	684
MunI	CAATTG	1 cut(s)	720
MvaI	CCWGG	1 cut(s)	684
MwoI	GCNNNNNNNGC	1 cut(s)	205
NcoI	CCATGG	3 cut(s)	168, 729, 813
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	3 cut(s)	535, 662, 844
NlaIII	CATG	6 cut(s)	172, 212, 333, 733, 805, 817
NlaIV	GGNNCC	1 cut(s)	114
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	163
NspI	RCATGY	1 cut(s)	805
PceI	AGGCCT	1 cut(s)	278
PfeI	GAWTC	3 cut(s)	68, 416, 616
PflMI	CCANNNNNTGG	1 cut(s)	335
PkrI	GCNGC	5 cut(s)	85, 153, 207, 511, 727
Psp6I	CCWGG	1 cut(s)	682
PspGI	CCWGG	1 cut(s)	682
PspN4I	GGNNCC	1 cut(s)	114
PspOMI	GGGCCC	1 cut(s)	112
PspPI	GGNCC	2 cut(s)	112, 113
PsuI	RGATCY	1 cut(s)	535
SaqAI	TTAA	1 cut(s)	780
SatI	GCNGC	5 cut(s)	84, 152, 206, 510, 726
Sau3AI	GATC	3 cut(s)	535, 662, 844
Sau96I	GGNCC	2 cut(s)	112, 113
ScrFI	CCNGG	1 cut(s)	684
SduI	GDGCHC	3 cut(s)	14, 116, 342
SfaNI	GCATC	1 cut(s)	186
SpeI	ACTAGT	1 cut(s)	406
Sse9I	AATT	3 cut(s)	640, 691, 720
SseBI	AGGCCT	1 cut(s)	278
SsiI	CCGC	1 cut(s)	510
SspMI	CTAG	2 cut(s)	15, 407
StuI	AGGCCT	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	682
StyI	CCWWGG	3 cut(s)	168, 729, 813
TaiI	ACGT	1 cut(s)	654
TaqI	TCGA	1 cut(s)	689
TasI	AATT	3 cut(s)	640, 691, 720
TauI	GCSGC	1 cut(s)	512
TfiI	GAWTC	3 cut(s)	68, 416, 616
Tru1I	TTAA	1 cut(s)	780
Tru9I	TTAA	1 cut(s)	780
TscAI	CASTG	3 cut(s)	123, 456, 489
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	4 cut(s)	83, 151, 205, 725
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	2 cut(s)	225, 629
TspRI	CASTG	3 cut(s)	123, 456, 489
Van91I	CCANNNNNTGG	1 cut(s)	335
XapI	RAATTY	2 cut(s)	640, 691
XceI	RCATGY	1 cut(s)	805
XmiI	GTMKAC	1 cut(s)	403
XspI	CTAG	2 cut(s)	15, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.