AT3G20960

cytochrome P450

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
7345261 .. 7347210
1950 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G20960.1

Sequence Viewer

Length: 1257 bp
ATGAACATCTCCTCTCGCGGTGCTGCTGCGATCGATGAGTCCCTCGTGTTTGGATCTTCTGGTGTCGTCTACGCTCCCTATGGAGATTACTTGAAGTTCGTGAAGAAGATCATTGCCACTAAGCTGCTTCGACCTCAGGTGTTGGAGCGGTCACGAGGTCTTCGTGCTGAAGAGCTACAACGACTTTACAACAGAATTCTTGATAAGGCGAAGATGAATGAGAACGTTGAGATCGGTAAGGAAGCGACGATGCTCATGAACAACATCTTCTGTAGGATGAGCATGGGAAGGAGTTTCTCAGAGGAGAATGGTGAGGCAGAGAGAGTCAGAGGCTTGGTGGCTGAATCATATGCCTTGGCGAAGAAGATTTTCTTCGCATCTGTACTGCGCAGACTGCTTAAGAAGCTTCGGATCCCACTATTCAAGAAGGATATCATGGATGTTTCCAACAGATTCAATGAGCTGCTAGAGAAGATTCTTGTGGAACACAATGAGAAACTGGACGAGGAACATAAAGACACGGATATGATGGACGTGTTGTTGGCAGCTTATGCAGATGAAAACGCTGAGTATAAGATTACTAGGAATCATATCAAGTCATTTTTCGTGGAGCTTTTCGTGGGAGGCACTGATACCTCGGTGCAAACAACACAATGGACAATGGCCGAGATCATTAATAACTCTGACGTTCTTGAGAGGCTGAGAGAAGAAATTGACTCTGTTGTAGGGACATCAAGAATGATTCAAGAAACAGATATACCAAACCTTCCTTATTTGCAAGCGGTGGTTAAGGAAGGACTAAGATTGCACCCACCATTTCCTCTCTTGACGAGGAAGTTTGAAGAAAGGTGTGAGATCAAAGGGTTCTACATCCCGGAGAAGACATTTCTTATTATAAATGCTTACGCTTGGATGAGAGATCCTGATTCCTGGGAAGATCCTAATGAGTTTAAGCCGGAGAGGTTTTTAGGTTCTTCAAGATTAGGACAAGTAGACGAGAGAGAGGAAGCTCAGAAGTACATTCCTTTCGGCGGAGGAAGGAGAGGCTGTCCTGGAGCAAATCTAGCTTCTATTTTCGTAGGAACCGCGATTGGAGTGATGGTGCAGTGCTTTGACTGGGGAATCAAAGGAGATAAGATCAACATGGAAGAGACTTTTGAAGGACTGACCCTTACCATGGTTCATCCAATTAAGTGCACTCCGATTCCTCGAACACTGCCTTTTGTAACTTCTAATCTCCAGAGTCCTAGCTCTTGA

Protein Analysis

418

Amino Acids

47.67

Weight (kDa)

5.95

Isoelectric Point (pI)

43.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 16 - 391 4.3e-75 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 896
Acc16I TGCGCA 1 cut(s) 389
AccBSI CCGCTC 1 cut(s) 148
AccI GTMKAC 2 cut(s) 69, 993
AccII CGCG 2 cut(s) 18, 1088
AciI CCGC 5 cut(s) 18, 148, 782, 1032, 1086
AclI AACGTT 1 cut(s) 225
AclWI GGATC 5 cut(s) 61, 406, 419, 914, 932
AcoI YGGCCR 1 cut(s) 663
AcsI RAATTY 1 cut(s) 195
AcuI CTGAAG 1 cut(s) 189
AfaI GTAC 2 cut(s) 384, 1019
AfiI CCNNNNNNNGG 2 cut(s) 1031, 1177
AflII CTTAAG 1 cut(s) 398
AflIII ACRYGT 1 cut(s) 534
AgsI TTSAA 7 cut(s) 94, 424, 457, 746, 842, 978, 1160
AjiI CACGTC 1 cut(s) 535
AjnI CCWGG 2 cut(s) 929, 1051
AluBI AGCT 9 cut(s) 124, 175, 406, 463, 548, 613, 1010, 1067, 1251
AluI AGCT 9 cut(s) 124, 175, 406, 463, 548, 613, 1010, 1067, 1251
Alw21I GWGCWC 1 cut(s) 1199
Alw26I GTCTC 1 cut(s) 1145
Alw44I GTGCAC 1 cut(s) 1195
AlwI GGATC 5 cut(s) 61, 406, 419, 914, 932
AoxI GGCC 1 cut(s) 663
ApaLI GTGCAC 1 cut(s) 1195
ApeKI GCWGC 5 cut(s) 23, 26, 124, 463, 545
ApoI RAATTY 1 cut(s) 195
AseI ATTAAT 1 cut(s) 675
Asp700I GAANNNNTTC 1 cut(s) 368
AspLEI GCGC 1 cut(s) 390
AsuC2I CCSGG 1 cut(s) 875
AsuHPI GGTGA 1 cut(s) 323
AxyI CCTNAGG 1 cut(s) 135
BaeGI GKGCMC 1 cut(s) 1199
BaeI ACNNNNGTAYC 2 cut(s) 624, 657
BamHI GGATCC 1 cut(s) 411
BauI CACGAG 2 cut(s) 44, 153
BbsI GAAGAC 2 cut(s) 152, 887
Bbv12I GWGCWC 1 cut(s) 1199
BbvI GCAGC 5 cut(s) 10, 13, 111, 450, 557
BccI CCATC 2 cut(s) 523, 1093
BciT130I CCWGG 2 cut(s) 931, 1053
BcnI CCSGG 1 cut(s) 875
BcoDI GTCTC 1 cut(s) 1145
BfaI CTAG 4 cut(s) 467, 582, 1064, 1248
BfmI CTRYAG 1 cut(s) 271
BfrI CTTAAG 1 cut(s) 398
BisI GCNGC 5 cut(s) 24, 27, 125, 464, 546
BlsI GCNGC 5 cut(s) 25, 28, 126, 465, 547
Bme1390I CCNGG 3 cut(s) 875, 931, 1053
BmgBI CACGTC 1 cut(s) 535
BmiI GGNNCC 2 cut(s) 413, 1084
BmrFI CCNGG 3 cut(s) 875, 931, 1053
BmrI ACTGGG 1 cut(s) 1126
BmsI GCATC 2 cut(s) 240, 386
BmuI ACTGGG 1 cut(s) 1126
BpiI GAAGAC 2 cut(s) 152, 887
BpmI CTGGAG 2 cut(s) 1074, 1223
BpuEI CTTGAG 1 cut(s) 713
BpuMI CCSGG 1 cut(s) 875
Bsa29I ATCGAT 1 cut(s) 33
BsaJI CCNNGG 4 cut(s) 354, 636, 930, 1176
BsaXI ACNNNNNCTCC 4 cut(s) 1033, 1063, 1086, 1116
Bsc4I CCNNNNNNNGG 2 cut(s) 1031, 1177
Bse1I ACTGG 2 cut(s) 504, 1121
Bse21I CCTNAGG 1 cut(s) 135
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 2 cut(s) 931, 1053
BseCI ATCGAT 1 cut(s) 33
BseDI CCNNGG 4 cut(s) 354, 636, 930, 1176
BseGI GGATG 5 cut(s) 282, 445, 870, 918, 1183
BseLI CCNNNNNNNGG 2 cut(s) 1031, 1177
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 5 cut(s) 149, 312, 558, 692, 1025
BseNI ACTGG 2 cut(s) 504, 1121
BseRI GAGGAG 1 cut(s) 317
BseSI GKGCMC 1 cut(s) 1199
BseXI GCAGC 5 cut(s) 10, 13, 111, 450, 557
BsgI GTGCAG 1 cut(s) 1124
Bsh1236I CGCG 2 cut(s) 18, 1088
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 1 cut(s) 665
BshVI ATCGAT 1 cut(s) 33
BsiEI CGRYCG 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 1199
BsiSI CCGG 2 cut(s) 875, 956
BslFI GGGAC 2 cut(s) 25, 742
BslI CCNNNNNNNGG 2 cut(s) 1031, 1177
BsmAI GTCTC 1 cut(s) 1145
BsmFI GGGAC 2 cut(s) 25, 742
BsnI GGCC 1 cut(s) 665
Bsp1286I GDGCHC 1 cut(s) 1199
Bsp19I CCATGG 1 cut(s) 1176
BspACI CCGC 5 cut(s) 18, 148, 782, 1032, 1086
BspANI GGCC 1 cut(s) 665
BspCNI CTCAG 5 cut(s) 148, 311, 559, 693, 1024
BspDI ATCGAT 1 cut(s) 33
BspFNI CGCG 2 cut(s) 18, 1088
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 2 cut(s) 413, 1084
BspPI GGATC 5 cut(s) 61, 406, 419, 914, 932
BspQI GCTCTTC 1 cut(s) 165
BspTI CTTAAG 1 cut(s) 398
BsrBI CCGCTC 1 cut(s) 148
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 2 cut(s) 504, 1121
BssECI CCNNGG 4 cut(s) 354, 636, 930, 1176
BssSI CACGAG 2 cut(s) 44, 153
BssT1I CCWWGG 2 cut(s) 354, 1176
Bst2BI CACGAG 2 cut(s) 44, 153
Bst2UI CCWGG 2 cut(s) 931, 1053
Bst6I CTCTTC 2 cut(s) 165, 1143
BstAFI CTTAAG 1 cut(s) 398
BstAPI GCANNNNNTGC 1 cut(s) 551
BstC8I GCNNGC 1 cut(s) 780
BstDEI CTNAG 7 cut(s) 120, 135, 298, 567, 701, 800, 1011
BstDSI CCRYGG 1 cut(s) 1176
BstF5I GGATG 5 cut(s) 282, 445, 870, 918, 1183
BstFNI CGCG 2 cut(s) 18, 1088
BstHHI GCGC 1 cut(s) 390
BstMAI GTCTC 1 cut(s) 1145
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 4 cut(s) 394, 403, 551, 1064
BstNI CCWGG 2 cut(s) 931, 1053
BstSCI CCNGG 3 cut(s) 873, 929, 1051
BstSFI CTRYAG 1 cut(s) 271
BstSLI GKGCMC 1 cut(s) 1199
BstUI CGCG 2 cut(s) 18, 1088
BstV1I GCAGC 5 cut(s) 10, 13, 111, 450, 557
BstV2I GAAGAC 2 cut(s) 152, 887
BstX2I RGATCY 4 cut(s) 53, 411, 919, 937
BstYI RGATCY 4 cut(s) 53, 411, 919, 937
Bsu15I ATCGAT 1 cut(s) 33
Bsu36I CCTNAGG 1 cut(s) 135
BsuRI GGCC 1 cut(s) 665
BsuTUI ATCGAT 1 cut(s) 33
BtgI CCRYGG 1 cut(s) 1176
BtrI CACGTC 1 cut(s) 535
BtsCI GGATG 5 cut(s) 282, 445, 870, 918, 1183
BtsI GCAGTG 2 cut(s) 1112, 1214
BtsIMutI CAGTG 3 cut(s) 627, 1112, 1214
Cac8I GCNNGC 1 cut(s) 780
CciI TCATGA 1 cut(s) 255
CfoI GCGC 1 cut(s) 390
ClaI ATCGAT 1 cut(s) 33
Csp6I GTAC 2 cut(s) 383, 1018
CviAII CATG 5 cut(s) 256, 283, 436, 1144, 1177
CviQI GTAC 2 cut(s) 383, 1018
DdeI CTNAG 7 cut(s) 120, 135, 298, 567, 701, 800, 1011
EaeI YGGCCR 1 cut(s) 663
Eam1104I CTCTTC 2 cut(s) 165, 1143
EarI CTCTTC 2 cut(s) 165, 1143
EciI GGCGGA 1 cut(s) 1047
Eco130I CCWWGG 2 cut(s) 354, 1176
Eco32I GATATC 1 cut(s) 433
Eco57I CTGAAG 1 cut(s) 189
Eco81I CCTNAGG 1 cut(s) 135
EcoRI GAATTC 1 cut(s) 195
EcoRII CCWGG 2 cut(s) 929, 1051
EcoRV GATATC 1 cut(s) 433
EcoT14I CCWWGG 2 cut(s) 354, 1176
ErhI CCWWGG 2 cut(s) 354, 1176
FaeI CATG 5 cut(s) 259, 286, 439, 1147, 1180
FalI AAGNNNNNCTT 2 cut(s) 356, 388
FaqI GGGAC 2 cut(s) 25, 742
FatI CATG 5 cut(s) 255, 282, 435, 1143, 1176
FauNDI CATATG 1 cut(s) 349
FblI GTMKAC 2 cut(s) 69, 993
Fnu4HI GCNGC 5 cut(s) 24, 27, 125, 464, 546
FokI GGATG 5 cut(s) 289, 452, 857, 925, 1170
Fsp4HI GCNGC 5 cut(s) 24, 27, 125, 464, 546
FspBI CTAG 4 cut(s) 467, 582, 1064, 1248
FspI TGCGCA 1 cut(s) 389
GlaI GCGC 1 cut(s) 389
GluI GCNGC 5 cut(s) 24, 27, 125, 464, 546
GsuI CTGGAG 2 cut(s) 1074, 1223
HaeIII GGCC 1 cut(s) 665
HapII CCGG 2 cut(s) 875, 956
HhaI GCGC 1 cut(s) 390
Hin1II CATG 5 cut(s) 259, 286, 439, 1147, 1180
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HindIII AAGCTT 1 cut(s) 404
HpaII CCGG 2 cut(s) 875, 956
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 3 cut(s) 70, 994, 1197
Hpy188I TCNGA 6 cut(s) 301, 329, 411, 685, 1014, 1203
Hpy8I GTNNAC 3 cut(s) 70, 994, 1197
Hpy99I CGWCG 1 cut(s) 250
HpyAV CCTTC 6 cut(s) 282, 421, 776, 788, 1032, 1154
HpyCH4IV ACGT 3 cut(s) 225, 534, 687
HpyCH4V TGCA 6 cut(s) 554, 643, 778, 808, 1105, 1197
HpyF10VI GCNNNNNNNGC 4 cut(s) 394, 403, 551, 1064
HpyF3I CTNAG 7 cut(s) 120, 135, 298, 567, 701, 800, 1011
HpySE526I ACGT 3 cut(s) 225, 534, 687
Hsp92II CATG 5 cut(s) 259, 286, 439, 1147, 1180
HspAI GCGC 1 cut(s) 388
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 4 cut(s) 79, 145, 610, 1055
Lsp1109I GCAGC 5 cut(s) 10, 13, 111, 450, 557
LweI GCATC 2 cut(s) 240, 386
MaeI CTAG 4 cut(s) 467, 582, 1064, 1248
MaeII ACGT 3 cut(s) 225, 534, 687
MaeIII GTNAC 2 cut(s) 150, 1225
MbiI CCGCTC 1 cut(s) 148
MflI RGATCY 4 cut(s) 53, 411, 919, 937
MhlI GDGCHC 1 cut(s) 1199
MluCI AATT 3 cut(s) 195, 711, 1188
MlyI GAGTC 4 cut(s) 47, 333, 710, 1252
MmeI TCCRAC 2 cut(s) 123, 471
MroXI GAANNNNTTC 1 cut(s) 368
MseI TTAA 5 cut(s) 399, 675, 789, 951, 1191
MslI CAYNNNNRTG 1 cut(s) 524
MspCI CTTAAG 1 cut(s) 398
MspI CCGG 2 cut(s) 875, 956
MspR9I CCNGG 3 cut(s) 875, 931, 1053
MvaI CCWGG 2 cut(s) 931, 1053
MvnI CGCG 2 cut(s) 18, 1088
MwoI GCNNNNNNNGC 4 cut(s) 394, 403, 551, 1064
NciI CCSGG 1 cut(s) 875
NcoI CCATGG 1 cut(s) 1176
NdeI CATATG 1 cut(s) 349
NlaIII CATG 5 cut(s) 259, 286, 439, 1147, 1180
NlaIV GGNNCC 2 cut(s) 413, 1084
NmeAIII GCCGAG 1 cut(s) 691
NmuCI GTSAC 1 cut(s) 150
NsbI TGCGCA 1 cut(s) 389
PagI TCATGA 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 368
PfeI GAWTC 8 cut(s) 344, 453, 475, 586, 742, 926, 1122, 1204
PfoI TCCNGGA 2 cut(s) 873, 1051
PkrI GCNGC 5 cut(s) 25, 28, 126, 465, 547
Ple19I CGATCG 1 cut(s) 33
PleI GAGTC 4 cut(s) 46, 332, 710, 1251
PpsI GAGTC 4 cut(s) 46, 332, 710, 1251
PshBI ATTAAT 1 cut(s) 675
PsiI TTATAA 1 cut(s) 896
Psp1406I AACGTT 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 929, 1051
PspGI CCWGG 2 cut(s) 929, 1051
PspN4I GGNNCC 2 cut(s) 413, 1084
PsuI RGATCY 4 cut(s) 53, 411, 919, 937
PvuI CGATCG 1 cut(s) 33
RsaI GTAC 2 cut(s) 384, 1019
RsaNI GTAC 2 cut(s) 383, 1018
RseI CAYNNNNRTG 1 cut(s) 524
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 5 cut(s) 399, 675, 789, 951, 1191
SatI GCNGC 5 cut(s) 24, 27, 125, 464, 546
SchI GAGTC 4 cut(s) 47, 333, 710, 1252
ScrFI CCNGG 3 cut(s) 875, 931, 1053
SduI GDGCHC 1 cut(s) 1199
SfaNI GCATC 2 cut(s) 240, 386
SfcI CTRYAG 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 524
SmlI CTYRAG 2 cut(s) 398, 692
SmoI CTYRAG 2 cut(s) 398, 692
Sse9I AATT 3 cut(s) 195, 711, 1188
SsiI CCGC 5 cut(s) 18, 148, 782, 1032, 1086
SspMI CTAG 4 cut(s) 467, 582, 1064, 1248
StyD4I CCNGG 3 cut(s) 873, 929, 1051
StyI CCWWGG 2 cut(s) 354, 1176
TaiI ACGT 3 cut(s) 228, 537, 690
TaqI TCGA 3 cut(s) 33, 130, 1210
TasI AATT 3 cut(s) 195, 711, 1188
TatI WGTACW 2 cut(s) 382, 1017
TfiI GAWTC 8 cut(s) 344, 453, 475, 586, 742, 926, 1122, 1204
Tru1I TTAA 5 cut(s) 399, 675, 789, 951, 1191
Tru9I TTAA 5 cut(s) 399, 675, 789, 951, 1191
TscAI CASTG 3 cut(s) 634, 1112, 1221
TseFI GTSAC 1 cut(s) 150
TseI GCWGC 5 cut(s) 23, 26, 124, 463, 545
Tsp45I GTSAC 1 cut(s) 150
TspDTI ATGAA 5 cut(s) 17, 230, 272, 573, 1172
TspGWI ACGGA 1 cut(s) 536
TspRI CASTG 3 cut(s) 634, 1112, 1221
Vha464I CTTAAG 1 cut(s) 398
VneI GTGCAC 1 cut(s) 1195
VspI ATTAAT 1 cut(s) 675
XapI RAATTY 1 cut(s) 195
XmiI GTMKAC 2 cut(s) 69, 993
XmnI GAANNNNTTC 1 cut(s) 368
XspI CTAG 4 cut(s) 467, 582, 1064, 1248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.