Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000895

Physical Location & Seq

Genomic Coordinates Reverse (-)

508963 .. 509746

Gene Structure 784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0002100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACATGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGATTGAAACCCTTCCATTGTTCCCCATGCCTGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGAGGGAGGTAGCGGTTATGGCGGTGGCTCTCGCATTTCCCTTGAGCTCAGTCTCAACTCCTCCGGAGCTGCTGATTTGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009506 GO:0009605 GO:0009606 GO:0009607 GO:0009620 GO:0009628 GO:0009629 GO:0009630 GO:0009812 GO:0009958 GO:0009987 GO:0010683 GO:0012505 GO:0016020 GO:0016491 GO:0016627 GO:0016705 GO:0016709 GO:0019748 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042214 GO:0042440 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046246 GO:0048364 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051552 GO:0051554 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071704 GO:0080003 GO:0080004 GO:0098542 GO:0099402 GO:1901360 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00980 ko01100 ko04212 ko04726 ko04750 ko04913 ko04917 ko04927 ko04934 ko05204 map00140 map00380 map00590 map00591 map00830 map00980 map01100 map04212 map04726 map04750 map04913 map04917 map04927 map04934 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

190

Amino Acids

20.59

Weight (kDa)

5.54

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	1.7e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28430 AT1G50520 AT1G50560 AT2G05180 AT2G14100 AT2G27000 AT2G27010 AT3G20080 AT3G20080 AT3G20080 AT3G20080 AT3G20080 AT3G20080 AT3G20090 AT3G20090 AT3G20100 AT3G20110 AT3G20120 AT3G20120 AT3G20120 AT3G20120 AT3G20130 AT3G20130 AT3G20140 AT3G20935 AT3G20940 AT3G20950 AT3G20960 AT3G20960 AT3G32047 AT4G15330 AT4G15330 AT4G15350 AT4G15360 AT4G15380 AT5G42580 AT5G47990
fragaria_vesca	FvH4_7g00640
malus_domestica	MD07G1006100.v1.1
prunus_persica	Prupe.2G008400_v2.0.a1 Prupe.2G008900_v2.0.a1 Prupe.4G287500_v2.0.a1
pyrus_communis	pycom07g00490
rosa_chinensis	RchiOBHm_Chr1g0314821 RchiOBHm_Chr1g0314871
rosa_laevigata	RLG00000030759 RLG00000030762
rosa_multiflora	Rmu_sc0002833.1_g000040 Rmu_sc0002833.1_g000046 Rmu_sc0010489.1_g000008 Rmu_sc0010489.1_g000015
rosa_roxburghii	Rroxscaffold_4G00331770 Rroxscaffold_4G00331860
rosa_rugosa	Rorug01G0002100 Rorug01G0002600
rosa_samantha	Rh1AG013000 Rh1AG013500 Rh1BG004600 Rh1BG005000 Rh1CG011500 Rh1CG011800 Rh1DG006300 Rh1DG006800
rosa_wichuraiana	Rw1G000560 Rw1G000610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	551
AciI	CCGC	2 cut(s)	501, 510
AclWI	GGATC	5 cut(s)	118, 131, 141, 330, 343
AfaI	GTAC	1 cut(s)	328
AfiI	CCNNNNNNNGG	2 cut(s)	329, 452
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	428
AhlI	ACTAGT	1 cut(s)	314
AjnI	CCWGG	4 cut(s)	92, 322, 417, 451
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	304, 336
AluBI	AGCT	4 cut(s)	7, 199, 535, 557
AluI	AGCT	4 cut(s)	7, 199, 535, 557
Alw21I	GWGCWC	2 cut(s)	177, 537
Alw26I	GTCTC	2 cut(s)	197, 545
AlwI	GGATC	5 cut(s)	118, 131, 141, 330, 343
Ama87I	CYCGRG	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	551
ApeKI	GCWGC	3 cut(s)	50, 293, 557
Asp700I	GAANNNNTTC	2 cut(s)	316, 432
AspS9I	GGNCC	1 cut(s)	357
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	407, 467
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	357
BaeGI	GKGCMC	2 cut(s)	164, 306
BamHI	GGATCC	2 cut(s)	123, 335
BanII	GRGCYC	2 cut(s)	262, 537
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	485
Bbv12I	GWGCWC	2 cut(s)	177, 537
BbvI	GCAGC	3 cut(s)	62, 280, 544
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	4 cut(s)	94, 324, 419, 453
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	2 cut(s)	197, 545
BcuI	ACTAGT	1 cut(s)	314
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	168
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	3 cut(s)	51, 294, 558
BlsI	GCNGC	3 cut(s)	52, 295, 559
Bme1390I	CCNGG	5 cut(s)	55, 94, 324, 419, 453
Bme18I	GGWCC	1 cut(s)	357
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	5 cut(s)	102, 125, 245, 337, 358
BmrFI	CCNGG	5 cut(s)	55, 94, 324, 419, 453
BpiI	GAAGAC	1 cut(s)	485
BpmI	CTGGAG	3 cut(s)	93, 179, 399
BpuEI	CTTGAG	3 cut(s)	113, 282, 551
BpuMI	CCSGG	1 cut(s)	55
BsaJI	CCNNGG	2 cut(s)	306, 489
BsaWI	WCCGGW	1 cut(s)	551
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 452
Bse1I	ACTGG	4 cut(s)	205, 334, 367, 376
BseAI	TCCGGA	1 cut(s)	551
BseBI	CCWGG	4 cut(s)	94, 324, 419, 453
BseDI	CCNNGG	2 cut(s)	306, 489
BseGI	GGATG	2 cut(s)	37, 389
BseLI	CCNNNNNNNGG	2 cut(s)	329, 452
BseMII	CTCAG	1 cut(s)	550
BseNI	ACTGG	4 cut(s)	205, 334, 367, 376
BseRI	GAGGAG	3 cut(s)	420, 423, 538
BseSI	GKGCMC	2 cut(s)	164, 306
BseXI	GCAGC	3 cut(s)	62, 280, 544
BseYI	CCCAGC	1 cut(s)	15
BsiHKAI	GWGCWC	2 cut(s)	177, 537
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	54, 552
BslI	CCNNNNNNNGG	2 cut(s)	329, 452
BsmAI	GTCTC	2 cut(s)	197, 545
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	5 cut(s)	164, 177, 262, 306, 537
Bsp13I	TCCGGA	1 cut(s)	551
Bsp143I	GATC	7 cut(s)	112, 123, 133, 186, 335, 343, 412
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	2 cut(s)	501, 510
BspCNI	CTCAG	1 cut(s)	549
BspEI	TCCGGA	1 cut(s)	551
BspLI	GGNNCC	5 cut(s)	102, 125, 245, 337, 358
BspPI	GGATC	5 cut(s)	118, 131, 141, 330, 343
BsrI	ACTGG	4 cut(s)	205, 334, 367, 376
BssECI	CCNNGG	2 cut(s)	306, 489
BssMI	GATC	7 cut(s)	112, 123, 133, 186, 335, 343, 412
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	4 cut(s)	94, 324, 419, 453
Bst6I	CTCTTC	1 cut(s)	272
BstDEI	CTNAG	1 cut(s)	536
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	2 cut(s)	37, 389
BstKTI	GATC	7 cut(s)	115, 126, 136, 189, 338, 346, 415
BstMAI	GTCTC	2 cut(s)	197, 545
BstMBI	GATC	7 cut(s)	112, 123, 133, 186, 335, 343, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	507, 566
BstNI	CCWGG	4 cut(s)	94, 324, 419, 453
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	5 cut(s)	53, 92, 322, 417, 451
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	2 cut(s)	164, 306
BstV1I	GCAGC	3 cut(s)	62, 280, 544
BstV2I	GAAGAC	1 cut(s)	485
BstX2I	RGATCY	4 cut(s)	123, 133, 186, 335
BstYI	RGATCY	4 cut(s)	123, 133, 186, 335
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	2 cut(s)	37, 389
BtsIMutI	CAGTG	1 cut(s)	360
Cfr13I	GGNCC	1 cut(s)	357
Csp6I	GTAC	1 cut(s)	327
CviAII	CATG	4 cut(s)	215, 307, 448, 475
CviJI	RGCY	9 cut(s)	7, 53, 87, 199, 260, 293, 516, 535, 557
CviKI_1	RGCY	9 cut(s)	7, 53, 87, 199, 260, 293, 516, 535, 557
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	1 cut(s)	536
DpnI	GATC	7 cut(s)	114, 125, 135, 188, 337, 345, 414
DpnII	GATC	7 cut(s)	112, 123, 133, 186, 335, 343, 412
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Ecl136II	GAGCTC	1 cut(s)	535
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	2 cut(s)	262, 537
Eco47I	GGWCC	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	535
Eco88I	CYCGRG	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	535
EcoRII	CCWGG	4 cut(s)	92, 322, 417, 451
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	2 cut(s)	262, 537
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	4 cut(s)	218, 310, 451, 478
FaiI	YATR	7 cut(s)	210, 216, 308, 449, 476, 507, 571
FatI	CATG	4 cut(s)	214, 306, 447, 474
Fnu4HI	GCNGC	3 cut(s)	51, 294, 558
FokI	GGATG	2 cut(s)	44, 376
FriOI	GRGCYC	2 cut(s)	262, 537
Fsp4HI	GCNGC	3 cut(s)	51, 294, 558
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	3 cut(s)	51, 294, 558
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	3 cut(s)	93, 179, 399
HapII	CCGG	2 cut(s)	54, 552
Hin1II	CATG	4 cut(s)	218, 310, 451, 478
HpaII	CCGG	2 cut(s)	54, 552
HphI	GGTGA	2 cut(s)	407, 467
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188I	TCNGA	1 cut(s)	490
Hpy188III	TCNNGA	5 cut(s)	110, 182, 247, 263, 552
Hpy8I	GTNNAC	1 cut(s)	360
HpyAV	CCTTC	1 cut(s)	443
HpyCH4V	TGCA	2 cut(s)	285, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	507, 566
HpyF3I	CTNAG	1 cut(s)	536
Hsp92II	CATG	4 cut(s)	218, 310, 451, 478
Kpn2I	TCCGGA	1 cut(s)	551
Kzo9I	GATC	7 cut(s)	112, 123, 133, 186, 335, 343, 412
LmnI	GCTCC	2 cut(s)	4, 554
Lsp1109I	GCAGC	3 cut(s)	62, 280, 544
MaeI	CTAG	1 cut(s)	315
MalI	GATC	7 cut(s)	114, 125, 135, 188, 337, 345, 414
MboI	GATC	7 cut(s)	112, 123, 133, 186, 335, 343, 412
MboII	GAAGA	2 cut(s)	289, 490
MflI	RGATCY	4 cut(s)	123, 133, 186, 335
MhlI	GDGCHC	5 cut(s)	164, 177, 262, 306, 537
MluCI	AATT	1 cut(s)	349
MroI	TCCGGA	1 cut(s)	551
MroXI	GAANNNNTTC	2 cut(s)	316, 432
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	2 cut(s)	54, 552
MspR9I	CCNGG	5 cut(s)	55, 94, 324, 419, 453
MvaI	CCWGG	4 cut(s)	94, 324, 419, 453
MwoI	GCNNNNNNNGC	2 cut(s)	507, 566
NciI	CCSGG	1 cut(s)	55
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	7 cut(s)	112, 123, 133, 186, 335, 343, 412
NlaIII	CATG	4 cut(s)	218, 310, 451, 478
NlaIV	GGNNCC	5 cut(s)	102, 125, 245, 337, 358
NspI	RCATGY	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	261
PciI	ACATGT	1 cut(s)	214
PdmI	GAANNNNTTC	2 cut(s)	316, 432
PkrI	GCNGC	3 cut(s)	52, 295, 559
PscI	ACATGT	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	537
Psp6I	CCWGG	4 cut(s)	92, 322, 417, 451
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	4 cut(s)	92, 322, 417, 451
PspN4I	GGNNCC	5 cut(s)	102, 125, 245, 337, 358
PspPI	GGNCC	1 cut(s)	357
PsuI	RGATCY	4 cut(s)	123, 133, 186, 335
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
SacI	GAGCTC	1 cut(s)	537
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	51, 294, 558
Sau3AI	GATC	7 cut(s)	112, 123, 133, 186, 335, 343, 412
Sau96I	GGNCC	1 cut(s)	357
ScrFI	CCNGG	5 cut(s)	55, 94, 324, 419, 453
SduI	GDGCHC	5 cut(s)	164, 177, 262, 306, 537
SetI	ASST	7 cut(s)	9, 98, 201, 284, 499, 537, 559
SfcI	CTRYAG	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	357
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	4 cut(s)	128, 261, 297, 530
SmoI	CTYRAG	4 cut(s)	128, 261, 297, 530
SpeI	ACTAGT	1 cut(s)	314
Sse9I	AATT	1 cut(s)	349
SsiI	CCGC	2 cut(s)	501, 510
SspMI	CTAG	1 cut(s)	315
SstI	GAGCTC	1 cut(s)	537
StyD4I	CCNGG	5 cut(s)	53, 92, 322, 417, 451
StyI	CCWWGG	1 cut(s)	306
TaqI	TCGA	2 cut(s)	27, 262
TasI	AATT	1 cut(s)	349
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	3 cut(s)	50, 293, 557
TspDTI	ATGAA	2 cut(s)	290, 491
TspRI	CASTG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	357
XceI	RCATGY	1 cut(s)	218
XhoI	CTCGAG	1 cut(s)	261
XmnI	GAANNNNTTC	2 cut(s)	316, 432
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.