AT5G47990

cytochrome P450

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
19434758 .. 19436749
1992 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47990.1

Sequence Viewer

Length: 1536 bp
ATGGCATCAATGATCACTGTTGACTTTGAAAACTGCTTCATCTTCCTCCTCTTATGTCTTTTCTCACGCCTCTCTTACGATCTTTTCTTCAGGAAAACAAAAGACTCACGAGCTGGCTGTGCTCTTCCTCCGAGCCCTCCTTCATTACCAATCATTGGTCATCTTCACCTTATACTCTTTGTCCCAATCCACCAGTCTTTCAAGAACATCTCATCTAAATATGGACCTCTCCTCCACCTCCGCTTCTTTAACTTCCCCATAGTCCTCGTCTCCTCGGCCTCAACGGCCTACGAGATCTTCAAGGCCCAAGACGTGAATGTCTCCTCTCGCCCTCCCCCTCCTATCGAGGAGTCTCTCATTTTAGGATCTTCCAGCTTCATCAACACTCCCTATGGAGATTACTCGAAGTTCATGAAGAAGTTCATGGTCCAAAAGCTGCTTGGACCACAAGCACTCCAACGGTCCCGAAATATCCGTGCAGATGAGCTGGAACGGTTCTACAAAACCCTGCTTGATAAGGCGATGAAGAAGCAGACTGTTGAGATTCGTAATGAAGCAATGAAGCTCACTAACAACACCATTTGCAAGATGATTATGGGGAGGAGTTGTTCAGAGGAGAACGGTGAGGCTGAGACAGTCAGAGGCTTGGTGACCGAGTCGATTTTCTTGACAAAGAAACATTTCTTGGGAGCCATGTTTCACAAACCACTTAAGAAGCTCGGGATCTCATTATTCGCAAAGGAATTGATGAATGTTTCCAACAGGTTTGATGAGCTACTGGAGAAGATTCTTGTTGAACATGAAGAGAAATTGCAGGAGCATCATCAAACTAGTGACATGTTGGATATGTTGTTGGAAGCTTATGGAGACGAAAACGCAGAGTATAAGATCACTAGAGACCAAATCAAGTCTTTGTTCGTGGATCTGTTCAGTGCAGGCACTGAAGCCTCGGCGAACACTATACAGTGGACCATGGCGGAGATCATTAAGAATCCTAAGATTTGTGAGAGACTGAGAGAAGAAATTGATTCTGTTGTAGGGAAAACAAGGTTGGTTCAAGAGACTGATCTACCAAATCTCCCTTACTTGCAAGCAATAGTTAAAGAAGGGCTAAGATTGCATCCTCCGGGACCAGTGGTAAGGACGTTCAAAGAGACATGTGAAATCAAAGGATTCTACATACCGGAGAAGACAAGACTTTTTGTTAATGTTTATGCGATAATGAGAGATCCTGATTTCTGGGAAGACCCTGAGGAGTTTAAGCCAGAGAGGTTTTTAGCTTCTTCAAGATTAGGGGAAGAGGATGAGAAAAGAGAGGACATGCTAAAATACATTCCTTTCGGTAGCGGAAGGAGAGCTTGTCCTGGATCACATCTAGCTTATACCGTTGTAGGAAGTGTAATTGGAATGATGGTGCAACACTTTGACTGGATAATCAAAGGAGAAAAAATCAACATGAAGGAGGGTGGAACAATGACCTTGACCATGGCTCACCCTCTTAAGTGCACTCCTGTTCCTCGAAACCTAAACACTTAA

Protein Analysis

511

Amino Acids

58.44

Weight (kDa)

7.97

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 43 - 499 2e-95 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 317
AccB7I CCANNNNNTGG 1 cut(s) 155
AciI CCGC 3 cut(s) 241, 977, 1347
AclWI GGATC 5 cut(s) 373, 731, 930, 1223, 1375
AcuI CTGAAG 2 cut(s) 73, 963
AfiI CCNNNNNNNGG 1 cut(s) 155
AflII CTTAAG 2 cut(s) 710, 1499
AflIII ACRYGT 2 cut(s) 837, 1157
AgsI TTSAA 7 cut(s) 29, 202, 301, 797, 1058, 1150, 1287
AhlI ACTAGT 1 cut(s) 830
AjiI CACGTC 1 cut(s) 313
AjnI CCWGG 1 cut(s) 1363
AjuI GAANNNNNNNTTGG 4 cut(s) 668, 700, 1034, 1066
AloI GAACNNNNNNTCC 2 cut(s) 592, 624
Alw21I GWGCWC 2 cut(s) 124, 1508
Alw26I GTCTC 9 cut(s) 274, 325, 357, 626, 861, 891, 1003, 1055, 1148
Alw44I GTGCAC 1 cut(s) 1504
AlwI GGATC 5 cut(s) 373, 731, 930, 1223, 1375
AlwNI CAGNNNCTG 1 cut(s) 941
Ama87I CYCGRG 1 cut(s) 719
AoxI GGCC 3 cut(s) 276, 285, 303
ApaLI GTGCAC 1 cut(s) 1504
ApeKI GCWGC 1 cut(s) 436
Asp700I GAANNNNTTC 2 cut(s) 419, 680
AspS9I GGNCC 7 cut(s) 224, 304, 427, 443, 462, 969, 1130
AsuC2I CCSGG 1 cut(s) 1128
AsuHPI GGTGA 4 cut(s) 158, 635, 661, 1484
AvaI CYCGRG 1 cut(s) 719
AvaII GGWCC 6 cut(s) 224, 427, 443, 462, 969, 1130
AxyI CCTNAGG 1 cut(s) 1251
BaeGI GKGCMC 1 cut(s) 1508
BanII GRGCYC 1 cut(s) 137
BauI CACGAG 1 cut(s) 108
BbsI GAAGAC 2 cut(s) 1196, 1251
Bbv12I GWGCWC 2 cut(s) 124, 1508
BbvI GCAGC 1 cut(s) 423
BccI CCATC 1 cut(s) 1405
BceAI ACGGC 1 cut(s) 300
BciT130I CCWGG 1 cut(s) 1365
BclI TGATCA 1 cut(s) 12
BcnI CCSGG 1 cut(s) 1128
BcoDI GTCTC 9 cut(s) 274, 325, 357, 626, 861, 891, 1003, 1055, 1148
BcuI ACTAGT 1 cut(s) 830
BfaI CTAG 3 cut(s) 831, 894, 1376
BfrI CTTAAG 2 cut(s) 710, 1499
BglI GCCNNNNNGGC 1 cut(s) 284
BglII AGATCT 1 cut(s) 294
BisI GCNGC 1 cut(s) 437
BlsI GCNGC 1 cut(s) 438
Bme1390I CCNGG 2 cut(s) 1128, 1365
Bme18I GGWCC 6 cut(s) 224, 427, 443, 462, 969, 1130
BmeT110I CYCGRG 1 cut(s) 719
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 7 cut(s) 224, 304, 427, 443, 462, 969, 1130
BmiI GGNNCC 3 cut(s) 464, 691, 1131
BmrFI CCNGG 2 cut(s) 1128, 1365
BmsI GCATC 3 cut(s) 14, 829, 1129
BpiI GAAGAC 2 cut(s) 1196, 1251
BpmI CTGGAG 1 cut(s) 800
BpuMI CCSGG 1 cut(s) 1128
BsaI GGTCTC 1 cut(s) 891
BsaJI CCNNGG 4 cut(s) 273, 948, 972, 1485
BsaWI WCCGGW 1 cut(s) 1183
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse1I ACTGG 4 cut(s) 193, 783, 1133, 1433
Bse21I CCTNAGG 1 cut(s) 1251
Bse3DI GCAATG 1 cut(s) 564
BseBI CCWGG 1 cut(s) 1365
BseDI CCNNGG 4 cut(s) 273, 948, 972, 1485
BseGI GGATG 2 cut(s) 1120, 1309
BseLI CCNNNNNNNGG 1 cut(s) 155
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 3 cut(s) 621, 1004, 1242
BseNI ACTGG 4 cut(s) 193, 783, 1133, 1433
BseRI GAGGAG 8 cut(s) 38, 221, 262, 313, 362, 616, 629, 1268
BseSI GKGCMC 1 cut(s) 1508
BseXI GCAGC 1 cut(s) 423
BsgI GTGCAG 2 cut(s) 498, 954
BshFI GGCC 3 cut(s) 278, 287, 305
BsiHKAI GWGCWC 2 cut(s) 124, 1508
BsiHKCI CYCGRG 1 cut(s) 719
BsiSI CCGG 2 cut(s) 1127, 1184
BslFI GGGAC 3 cut(s) 167, 448, 1143
BslI CCNNNNNNNGG 1 cut(s) 155
BsmAI GTCTC 9 cut(s) 274, 325, 357, 626, 861, 891, 1003, 1055, 1148
BsmBI CGTCTC 2 cut(s) 274, 861
BsmFI GGGAC 3 cut(s) 167, 448, 1143
BsnI GGCC 3 cut(s) 278, 287, 305
Bso31I GGTCTC 1 cut(s) 891
BsoBI CYCGRG 1 cut(s) 719
Bsp1286I GDGCHC 3 cut(s) 124, 137, 1508
Bsp19I CCATGG 2 cut(s) 972, 1485
BspACI CCGC 3 cut(s) 241, 977, 1347
BspANI GGCC 3 cut(s) 278, 287, 305
BspCNI CTCAG 3 cut(s) 622, 1005, 1243
BspHI TCATGA 1 cut(s) 411
BspLI GGNNCC 3 cut(s) 464, 691, 1131
BspPI GGATC 5 cut(s) 373, 731, 930, 1223, 1375
BspQI GCTCTTC 1 cut(s) 129
BspTI CTTAAG 2 cut(s) 710, 1499
BspTNI GGTCTC 1 cut(s) 891
BsrDI GCAATG 1 cut(s) 564
BsrI ACTGG 4 cut(s) 193, 783, 1133, 1433
BssECI CCNNGG 4 cut(s) 273, 948, 972, 1485
BssSI CACGAG 1 cut(s) 108
BssT1I CCWWGG 2 cut(s) 972, 1485
Bst2BI CACGAG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 1365
Bst4CI ACNGT 8 cut(s) 19, 462, 495, 538, 623, 637, 966, 1387
Bst6I CTCTTC 3 cut(s) 129, 798, 1293
BstAFI CTTAAG 2 cut(s) 710, 1499
BstC8I GCNNGC 3 cut(s) 115, 937, 1092
BstDEI CTNAG 5 cut(s) 630, 996, 1013, 1112, 1251
BstDSI CCRYGG 2 cut(s) 972, 1485
BstEII GGTNACC 1 cut(s) 649
BstF5I GGATG 2 cut(s) 1120, 1309
BstMAI GTCTC 9 cut(s) 274, 325, 357, 626, 861, 891, 1003, 1055, 1148
BstMWI GCNNNNNNNGC 3 cut(s) 119, 284, 1117
BstNI CCWGG 1 cut(s) 1365
BstNSI RCATGY 3 cut(s) 841, 1161, 1324
BstPI GGTNACC 1 cut(s) 649
BstSCI CCNGG 2 cut(s) 1126, 1363
BstSLI GKGCMC 1 cut(s) 1508
BstV1I GCAGC 1 cut(s) 423
BstV2I GAAGAC 2 cut(s) 1196, 1251
BstX2I RGATCY 5 cut(s) 294, 365, 723, 922, 1228
BstYI RGATCY 5 cut(s) 294, 365, 723, 922, 1228
Bsu36I CCTNAGG 1 cut(s) 1251
BsuRI GGCC 3 cut(s) 278, 287, 305
BtgI CCRYGG 2 cut(s) 972, 1485
BtgZI GCGATG 1 cut(s) 536
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 2 cut(s) 1120, 1309
BtsIMutI CAGTG 5 cut(s) 15, 937, 939, 971, 1140
Cac8I GCNNGC 3 cut(s) 115, 937, 1092
CaiI CAGNNNCTG 1 cut(s) 941
CciI TCATGA 1 cut(s) 411
Cfr13I GGNCC 7 cut(s) 224, 304, 427, 443, 462, 969, 1130
DdeI CTNAG 5 cut(s) 630, 996, 1013, 1112, 1251
DrdI GACNNNNNNGTC 1 cut(s) 317
DseDI GACNNNNNNGTC 1 cut(s) 317
Eam1104I CTCTTC 3 cut(s) 129, 798, 1293
EarI CTCTTC 3 cut(s) 129, 798, 1293
EciI GGCGGA 1 cut(s) 992
Eco130I CCWWGG 2 cut(s) 972, 1485
Eco24I GRGCYC 1 cut(s) 137
Eco31I GGTCTC 1 cut(s) 891
Eco47I GGWCC 6 cut(s) 224, 427, 443, 462, 969, 1130
Eco57I CTGAAG 2 cut(s) 73, 963
Eco81I CCTNAGG 1 cut(s) 1251
Eco88I CYCGRG 1 cut(s) 719
Eco91I GGTNACC 1 cut(s) 649
EcoO65I GGTNACC 1 cut(s) 649
EcoRII CCWGG 1 cut(s) 1363
EcoT14I CCWWGG 2 cut(s) 972, 1485
EcoT38I GRGCYC 1 cut(s) 137
ErhI CCWWGG 2 cut(s) 972, 1485
Esp3I CGTCTC 2 cut(s) 274, 861
FalI AAGNNNNNCTT 2 cut(s) 1342, 1374
FaqI GGGAC 3 cut(s) 167, 448, 1143
FbaI TGATCA 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 437
FokI GGATG 2 cut(s) 1107, 1316
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 1 cut(s) 437
FspBI CTAG 3 cut(s) 831, 894, 1376
GluI GCNGC 1 cut(s) 437
GsuI CTGGAG 1 cut(s) 800
HaeIII GGCC 3 cut(s) 278, 287, 305
HapII CCGG 2 cut(s) 1127, 1184
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 858
HinfI GANTC 8 cut(s) 104, 350, 544, 656, 787, 991, 1028, 1173
HpaII CCGG 2 cut(s) 1127, 1184
HphI GGTGA 4 cut(s) 158, 635, 661, 1484
Hpy166II GTNNAC 3 cut(s) 22, 969, 1506
Hpy188I TCNGA 3 cut(s) 132, 613, 641
Hpy8I GTNNAC 3 cut(s) 22, 969, 1506
HpyAV CCTTC 4 cut(s) 150, 1100, 1344, 1453
HpyCH4III ACNGT 8 cut(s) 19, 462, 495, 538, 623, 637, 966, 1387
HpyCH4IV ACGT 2 cut(s) 312, 1145
HpyCH4V TGCA 8 cut(s) 479, 585, 814, 935, 1090, 1120, 1417, 1506
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 284, 1117
HpyF3I CTNAG 5 cut(s) 630, 996, 1013, 1112, 1251
HpySE526I ACGT 2 cut(s) 312, 1145
Ksp22I TGATCA 1 cut(s) 12
LguI GCTCTTC 1 cut(s) 129
LmnI GCTCC 2 cut(s) 689, 817
Lsp1109I GCAGC 1 cut(s) 423
LweI GCATC 3 cut(s) 14, 829, 1129
MaeI CTAG 3 cut(s) 831, 894, 1376
MaeII ACGT 2 cut(s) 312, 1145
MaeIII GTNAC 2 cut(s) 649, 833
MflI RGATCY 5 cut(s) 294, 365, 723, 922, 1228
MhlI GDGCHC 3 cut(s) 124, 137, 1508
MluCI AATT 4 cut(s) 743, 809, 1023, 1401
MlyI GAGTC 3 cut(s) 98, 359, 665
MmeI TCCRAC 4 cut(s) 481, 783, 822, 834
MroXI GAANNNNTTC 2 cut(s) 419, 680
MseI TTAA 8 cut(s) 249, 711, 987, 1101, 1206, 1260, 1500, 1534
MspCI CTTAAG 2 cut(s) 710, 1499
MspI CCGG 2 cut(s) 1127, 1184
MspR9I CCNGG 2 cut(s) 1128, 1365
MvaI CCWGG 1 cut(s) 1365
MwoI GCNNNNNNNGC 3 cut(s) 119, 284, 1117
NciI CCSGG 1 cut(s) 1128
NcoI CCATGG 2 cut(s) 972, 1485
NlaIV GGNNCC 3 cut(s) 464, 691, 1131
NmeAIII GCCGAG 2 cut(s) 254, 929
NmuCI GTSAC 2 cut(s) 649, 833
NspI RCATGY 3 cut(s) 841, 1161, 1324
PagI TCATGA 1 cut(s) 411
PciI ACATGT 2 cut(s) 837, 1157
PciSI GCTCTTC 1 cut(s) 129
PdmI GAANNNNTTC 2 cut(s) 419, 680
PfeI GAWTC 5 cut(s) 544, 787, 991, 1028, 1173
PflFI GACNNNGTC 1 cut(s) 655
PflMI CCANNNNNTGG 1 cut(s) 155
PfoI TCCNGGA 2 cut(s) 1126, 1363
PkrI GCNGC 1 cut(s) 438
PleI GAGTC 3 cut(s) 98, 358, 664
PpsI GAGTC 3 cut(s) 98, 358, 664
PscI ACATGT 2 cut(s) 837, 1157
Psp6I CCWGG 1 cut(s) 1363
PspEI GGTNACC 1 cut(s) 649
PspGI CCWGG 1 cut(s) 1363
PspN4I GGNNCC 3 cut(s) 464, 691, 1131
PspPI GGNCC 7 cut(s) 224, 304, 427, 443, 462, 969, 1130
PstNI CAGNNNCTG 1 cut(s) 941
PsuI RGATCY 5 cut(s) 294, 365, 723, 922, 1228
PsyI GACNNNGTC 1 cut(s) 655
SapI GCTCTTC 1 cut(s) 129
SaqAI TTAA 8 cut(s) 249, 711, 987, 1101, 1206, 1260, 1500, 1534
SatI GCNGC 1 cut(s) 437
Sau96I GGNCC 7 cut(s) 224, 304, 427, 443, 462, 969, 1130
SchI GAGTC 3 cut(s) 98, 359, 665
ScrFI CCNGG 2 cut(s) 1128, 1365
SduI GDGCHC 3 cut(s) 124, 137, 1508
SfaNI GCATC 3 cut(s) 14, 829, 1129
SfiI GGCCNNNNNGGCC 1 cut(s) 284
SinI GGWCC 6 cut(s) 224, 427, 443, 462, 969, 1130
SmlI CTYRAG 2 cut(s) 710, 1499
SmoI CTYRAG 2 cut(s) 710, 1499
SpeI ACTAGT 1 cut(s) 830
Sse9I AATT 4 cut(s) 743, 809, 1023, 1401
SsiI CCGC 3 cut(s) 241, 977, 1347
SspMI CTAG 3 cut(s) 831, 894, 1376
StyD4I CCNGG 2 cut(s) 1126, 1363
StyI CCWWGG 2 cut(s) 972, 1485
TaaI ACNGT 8 cut(s) 19, 462, 495, 538, 623, 637, 966, 1387
TaiI ACGT 2 cut(s) 315, 1148
TaqI TCGA 4 cut(s) 345, 404, 659, 1519
TaqII GACCGA 1 cut(s) 668
TasI AATT 4 cut(s) 743, 809, 1023, 1401
TfiI GAWTC 5 cut(s) 544, 787, 991, 1028, 1173
Tru1I TTAA 8 cut(s) 249, 711, 987, 1101, 1206, 1260, 1500, 1534
Tru9I TTAA 8 cut(s) 249, 711, 987, 1101, 1206, 1260, 1500, 1534
TscAI CASTG 5 cut(s) 22, 937, 946, 971, 1140
TseFI GTSAC 2 cut(s) 649, 833
TseI GCWGC 1 cut(s) 436
Tsp45I GTSAC 2 cut(s) 649, 833
TspGWI ACGGA 1 cut(s) 464
TspRI CASTG 5 cut(s) 22, 937, 946, 971, 1140
Tth111I GACNNNGTC 1 cut(s) 655
Van91I CCANNNNNTGG 1 cut(s) 155
Vha464I CTTAAG 2 cut(s) 710, 1499
VneI GTGCAC 1 cut(s) 1504
VpaK11BI GGWCC 6 cut(s) 224, 427, 443, 462, 969, 1130
XceI RCATGY 3 cut(s) 841, 1161, 1324
XcmI CCANNNNNNNNNTGG 1 cut(s) 437
XmnI GAANNNNTTC 2 cut(s) 419, 680
XspI CTAG 3 cut(s) 831, 894, 1376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.