AT3G20940

cytochrome P450

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
7339640 .. 7341703
2064 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G20940.1

Sequence Viewer

Length: 1572 bp
ATGGCAGCAATGATCACCTTTGACTTTCAAAACAGCTTCATCTTCATCCTCTTTTTTCTCTTCTCTCTCCTTTGTTACTCTCTCTTCTTCAGGAAACCAAAGGGCTCACGAGCTGGCCGTGATCTTCCTCCGAGCCCTCCTTCTTTTCCTGTAATTGGTCATCTTCACCTTCTTCTCTCTGCTCTTGTTCACAAGTCTTTTCAAAACATCTCCTCTAAGTATGGACCTCTTCTCCATCTCCGCGTCTTCCACATTCCCATAGTCCTCGCCTCCTCGGCCTCAGTGGCCTACGAGATCTTCAAGGCCCAAGATGTGAATGTCTCCTCTCGCGGTCACGCTCCAGTCGGGGAGTCTCTCTGGTTTGGATCGTCTAGCTTCTTCTTCGCTCCCTATGGAGATTACTTTAAATTTATGAGGAAGCTCATAGCCACAAAGCTTCTTGGACCACAGGCACTCGAGCGTTCACGAAAAATCCGTGCAGATGAGCTAGATCGGTTTTACAAAACCTTGCTTGACAAGGCGATGAAGAAGGAGAGTGTTGAGATCGGTGAGGAAGCAGCGAAGCTCAATAACAATATCATCTGCAAGATGATCATGGGGAGGAGTTGTTCAGAGGAGAATGGTGAGGCGGAGAAATTCAGACACTTGGTGATCGAGTCGATGGCTTTGACAAAGCAAATCTTCTTTGGTATGATCTTTCACAAACCGCTTAAAAAGCTCGGGATCTCACTGTTCCAAAAGGATATACTAAGTCTTTCCCGCAAGTTCGACGAGTTGCTGGAGAAGATTCTTTTTGAACACGAAGAGAAAAAGGCGGAGCACAATCAAGCTAATGACATGATGGATTTTTTGTTGGAAGCTTATGGAGACGAAAATGCAGAGTATAAAATCACAAGAAACCATATCAAGTCCTTGTTCGTGGATCTTGTCATTGCAGGGACTGACACCTCGGTGCAAGCAACACAGTGGACAATGGGGGAGCTCATTAACAACCCTAAGATTCTTCAGAGATTGAGAGAAGAAATCGAATCGGTTGTAGGGAACACAAGATTAATTCAAGAAAATGATTTACCAAACCTCCCTTACTTGCAAGCGGTAGTCAAAGAAGGGCTAAGATTGCATCCGCCGGGGTCTATCTCGGTAAGGATGTTTCAAGAAAGGTGTGAACTCAAAGGGTTCTACATACCGGAGAAGACATTACTTGTTGTTAATACTTATGCTATAATGAGAGATCCTAATTTCTGGGAAGATCCTGAGGAGTTTAAACCTGAGAGGTTTATAGCATCTTCAAGATCAGAGCAAGAGGACGAGGTAAGAGAGGAAGTCTTGAAATACATTCCTTTCTCCGCGGGAAGGAGAGGCTGTCCTGGATCAAATCTAGCTTATATCTCTCTAGGAATCGTGATTGGGGTAATGGTGCAGTGCTTTGATTGGAGAATTGAAGGAGAGAAAGTAAACATGAATGAGGCTGCTGAAACAACTGCGTTGTCCATGGCTCAGCCTCTTAAGTGCACTCCTGTTTCTCGAACCAAAAACCCTTTGCCATCAAGTCTACATATTCCCAGTTCTTGA

Protein Analysis

523

Amino Acids

59.57

Weight (kDa)

7.64

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 43 - 495 1e-90 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1552
AccII CGCG 3 cut(s) 243, 330, 1349
AclWI GGATC 6 cut(s) 373, 731, 930, 1226, 1244, 1378
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 2 cut(s) 407, 635
AcuI CTGAAG 2 cut(s) 73, 989
AdeI CACNNNGTG 1 cut(s) 649
AfiI CCNNNNNNNGG 2 cut(s) 155, 1353
AflII CTTAAG 1 cut(s) 1505
AgsI TTSAA 9 cut(s) 29, 203, 301, 797, 1058, 1154, 1290, 1330, 1442
AjnI CCWGG 1 cut(s) 1366
AleI CACNNNNGTG 1 cut(s) 950
AloI GAACNNNNNNTCC 2 cut(s) 592, 624
Alw21I GWGCWC 3 cut(s) 822, 984, 1514
Alw26I GTCTC 3 cut(s) 325, 357, 861
Alw44I GTGCAC 1 cut(s) 1510
AlwI GGATC 6 cut(s) 373, 731, 930, 1226, 1244, 1378
AlwNI CAGNNNCTG 1 cut(s) 941
Ama87I CYCGRG 2 cut(s) 455, 719
AoxI GGCC 4 cut(s) 115, 276, 285, 303
ApaLI GTGCAC 1 cut(s) 1510
ApeKI GCWGC 3 cut(s) 5, 557, 1469
ApoI RAATTY 2 cut(s) 407, 635
AseI ATTAAT 1 cut(s) 1052
AspS9I GGNCC 3 cut(s) 224, 304, 443
AsuC2I CCSGG 1 cut(s) 1128
AsuHPI GGTGA 5 cut(s) 7, 158, 560, 635, 661
AvaI CYCGRG 2 cut(s) 455, 719
AvaII GGWCC 2 cut(s) 224, 443
AxyI CCTNAGG 1 cut(s) 1254
BaeGI GKGCMC 1 cut(s) 1514
BanII GRGCYC 3 cut(s) 107, 137, 984
BauI CACGAG 1 cut(s) 108
BbsI GAAGAC 2 cut(s) 238, 1199
Bbv12I GWGCWC 3 cut(s) 822, 984, 1514
BbvI GCAGC 3 cut(s) 17, 569, 1456
BccI CCATC 4 cut(s) 243, 655, 835, 1552
BceAI ACGGC 1 cut(s) 102
BciT130I CCWGG 1 cut(s) 1368
BclI TGATCA 2 cut(s) 12, 591
BcnI CCSGG 1 cut(s) 1128
BcoDI GTCTC 3 cut(s) 325, 357, 861
BfaI CTAG 4 cut(s) 372, 488, 1379, 1394
BfrI CTTAAG 1 cut(s) 1505
BglI GCCNNNNNGGC 2 cut(s) 275, 284
BglII AGATCT 1 cut(s) 294
BisI GCNGC 3 cut(s) 6, 558, 1470
BlpI GCTNAGC 1 cut(s) 1497
BlsI GCNGC 3 cut(s) 7, 559, 1471
Bme1390I CCNGG 2 cut(s) 1128, 1368
Bme18I GGWCC 2 cut(s) 224, 443
BmeT110I CYCGRG 2 cut(s) 455, 719
BmgT120I GGNCC 3 cut(s) 224, 304, 443
BmrFI CCNGG 2 cut(s) 1128, 1368
BmrI ACTGGG 1 cut(s) 1557
BmsI GCATC 2 cut(s) 1129, 1292
BmuI ACTGGG 1 cut(s) 1557
BpiI GAAGAC 2 cut(s) 238, 1199
BpmI CTGGAG 2 cut(s) 324, 800
Bpu1102I GCTNAGC 1 cut(s) 1497
BpuMI CCSGG 1 cut(s) 1128
BsaJI CCNNGG 5 cut(s) 273, 948, 1127, 1347, 1491
BsaWI WCCGGW 1 cut(s) 1186
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 1353
Bse1I ACTGG 2 cut(s) 341, 1563
Bse21I CCTNAGG 1 cut(s) 1254
Bse3DI GCAATG 2 cut(s) 15, 930
BseBI CCWGG 1 cut(s) 1368
BseDI CCNNGG 5 cut(s) 273, 948, 1127, 1347, 1491
BseGI GGATG 3 cut(s) 45, 1120, 1152
BseLI CCNNNNNNNGG 2 cut(s) 155, 1353
BseMI GCAATG 2 cut(s) 15, 930
BseMII CTCAG 4 cut(s) 294, 1245, 1260, 1511
BseNI ACTGG 2 cut(s) 341, 1563
BseRI GAGGAG 6 cut(s) 202, 262, 313, 616, 629, 1271
BseSI GKGCMC 1 cut(s) 1514
BseXI GCAGC 3 cut(s) 17, 569, 1456
BsgI GTGCAG 2 cut(s) 498, 1439
Bsh1236I CGCG 3 cut(s) 243, 330, 1349
BshFI GGCC 4 cut(s) 117, 278, 287, 305
BsiHKAI GWGCWC 3 cut(s) 822, 984, 1514
BsiHKCI CYCGRG 2 cut(s) 455, 719
BsiSI CCGG 2 cut(s) 1127, 1187
BslFI GGGAC 1 cut(s) 952
BslI CCNNNNNNNGG 2 cut(s) 155, 1353
BsmAI GTCTC 3 cut(s) 325, 357, 861
BsmBI CGTCTC 1 cut(s) 861
BsmFI GGGAC 1 cut(s) 952
BsnI GGCC 4 cut(s) 117, 278, 287, 305
BsoBI CYCGRG 2 cut(s) 455, 719
Bsp1286I GDGCHC 5 cut(s) 107, 137, 822, 984, 1514
Bsp1720I GCTNAGC 1 cut(s) 1497
Bsp19I CCATGG 1 cut(s) 1491
BspANI GGCC 4 cut(s) 117, 278, 287, 305
BspCNI CTCAG 4 cut(s) 293, 1246, 1261, 1510
BspFNI CGCG 3 cut(s) 243, 330, 1349
BspPI GGATC 6 cut(s) 373, 731, 930, 1226, 1244, 1378
BspTI CTTAAG 1 cut(s) 1505
BsrDI GCAATG 2 cut(s) 15, 930
BsrI ACTGG 2 cut(s) 341, 1563
BssECI CCNNGG 5 cut(s) 273, 948, 1127, 1347, 1491
BssSI CACGAG 1 cut(s) 108
BssT1I CCWWGG 1 cut(s) 1491
Bst2BI CACGAG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 1368
Bst4CI ACNGT 2 cut(s) 732, 966
Bst6I CTCTTC 4 cut(s) 65, 89, 234, 798
BstAFI CTTAAG 1 cut(s) 1505
BstC8I GCNNGC 3 cut(s) 115, 957, 1092
BstDEI CTNAG 8 cut(s) 216, 280, 749, 996, 1112, 1254, 1269, 1497
BstDSI CCRYGG 2 cut(s) 1347, 1491
BstF5I GGATG 3 cut(s) 45, 1120, 1152
BstFNI CGCG 3 cut(s) 243, 330, 1349
BstMAI GTCTC 3 cut(s) 325, 357, 861
BstMWI GCNNNNNNNGC 4 cut(s) 275, 284, 715, 1117
BstNI CCWGG 1 cut(s) 1368
BstSCI CCNGG 2 cut(s) 1126, 1366
BstSLI GKGCMC 1 cut(s) 1514
BstUI CGCG 3 cut(s) 243, 330, 1349
BstV1I GCAGC 3 cut(s) 17, 569, 1456
BstV2I GAAGAC 2 cut(s) 238, 1199
BstX2I RGATCY 5 cut(s) 294, 723, 922, 1231, 1249
BstYI RGATCY 5 cut(s) 294, 723, 922, 1231, 1249
Bsu36I CCTNAGG 1 cut(s) 1254
BsuRI GGCC 4 cut(s) 117, 278, 287, 305
BtgI CCRYGG 2 cut(s) 1347, 1491
BtgZI GCGATG 1 cut(s) 536
BtsCI GGATG 3 cut(s) 45, 1120, 1152
BtsI GCAGTG 1 cut(s) 1427
BtsIMutI CAGTG 4 cut(s) 288, 728, 971, 1427
Cac8I GCNNGC 3 cut(s) 115, 957, 1092
CaiI CAGNNNCTG 1 cut(s) 941
Cfr13I GGNCC 3 cut(s) 224, 304, 443
Cfr42I CCGCGG 1 cut(s) 1350
CseI GACGC 1 cut(s) 232
CviAII CATG 4 cut(s) 595, 838, 1459, 1492
DdeI CTNAG 8 cut(s) 216, 280, 749, 996, 1112, 1254, 1269, 1497
DraI TTTAAA 2 cut(s) 406, 1264
DraIII CACNNNGTG 1 cut(s) 649
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 4 cut(s) 65, 89, 234, 798
EarI CTCTTC 4 cut(s) 65, 89, 234, 798
EciI GGCGGA 3 cut(s) 644, 830, 1113
Ecl136II GAGCTC 1 cut(s) 982
Eco130I CCWWGG 1 cut(s) 1491
Eco24I GRGCYC 3 cut(s) 107, 137, 984
Eco47I GGWCC 2 cut(s) 224, 443
Eco53kI GAGCTC 1 cut(s) 982
Eco57I CTGAAG 2 cut(s) 73, 989
Eco81I CCTNAGG 1 cut(s) 1254
Eco88I CYCGRG 2 cut(s) 455, 719
EcoICRI GAGCTC 1 cut(s) 982
EcoRII CCWGG 1 cut(s) 1366
EcoT14I CCWWGG 1 cut(s) 1491
EcoT38I GRGCYC 3 cut(s) 107, 137, 984
ErhI CCWWGG 1 cut(s) 1491
Esp3I CGTCTC 1 cut(s) 861
FaeI CATG 4 cut(s) 598, 841, 1462, 1495
FalI AAGNNNNNCTT 2 cut(s) 665, 697
FaqI GGGAC 1 cut(s) 952
FatI CATG 4 cut(s) 594, 837, 1458, 1491
FauI CCCGC 2 cut(s) 767, 1342
FbaI TGATCA 2 cut(s) 12, 591
FblI GTMKAC 1 cut(s) 1552
Fnu4HI GCNGC 3 cut(s) 6, 558, 1470
FokI GGATG 3 cut(s) 32, 1107, 1159
FriOI GRGCYC 3 cut(s) 107, 137, 984
Fsp4HI GCNGC 3 cut(s) 6, 558, 1470
FspBI CTAG 4 cut(s) 372, 488, 1379, 1394
GluI GCNGC 3 cut(s) 6, 558, 1470
GsuI CTGGAG 2 cut(s) 324, 800
HaeIII GGCC 4 cut(s) 117, 278, 287, 305
HapII CCGG 2 cut(s) 1127, 1187
HgaI GACGC 1 cut(s) 232
Hin1II CATG 4 cut(s) 598, 841, 1462, 1495
HindIII AAGCTT 2 cut(s) 434, 858
HinfI GANTC 6 cut(s) 350, 656, 787, 1000, 1028, 1398
HpaII CCGG 2 cut(s) 1127, 1187
HphI GGTGA 5 cut(s) 7, 158, 560, 635, 661
Hpy166II GTNNAC 7 cut(s) 190, 464, 969, 1166, 1456, 1512, 1553
Hpy188I TCNGA 5 cut(s) 132, 613, 641, 1008, 1297
Hpy8I GTNNAC 7 cut(s) 190, 464, 969, 1166, 1456, 1512, 1553
Hpy99I CGWCG 1 cut(s) 773
HpyAV CCTTC 6 cut(s) 150, 179, 523, 1100, 1347, 1436
HpyCH4III ACNGT 2 cut(s) 732, 966
HpyCH4V TGCA 9 cut(s) 479, 585, 878, 935, 955, 1090, 1120, 1420, 1512
HpyF10VI GCNNNNNNNGC 4 cut(s) 275, 284, 715, 1117
HpyF3I CTNAG 8 cut(s) 216, 280, 749, 996, 1112, 1254, 1269, 1497
Hsp92II CATG 4 cut(s) 598, 841, 1462, 1495
Ksp22I TGATCA 2 cut(s) 12, 591
KspI CCGCGG 1 cut(s) 1350
LmnI GCTCC 4 cut(s) 343, 391, 817, 979
Lsp1109I GCAGC 3 cut(s) 17, 569, 1456
LweI GCATC 2 cut(s) 1129, 1292
MaeI CTAG 4 cut(s) 372, 488, 1379, 1394
MaeIII GTNAC 2 cut(s) 74, 332
MflI RGATCY 5 cut(s) 294, 723, 922, 1231, 1249
MhlI GDGCHC 5 cut(s) 107, 137, 822, 984, 1514
MluCI AATT 6 cut(s) 153, 407, 635, 1053, 1237, 1437
MlyI GAGTC 2 cut(s) 359, 665
MmeI TCCRAC 1 cut(s) 834
MseI TTAA 7 cut(s) 405, 711, 987, 1052, 1209, 1263, 1506
MslI CAYNNNNRTG 1 cut(s) 950
MspA1I CMGCKG 1 cut(s) 1349
MspCI CTTAAG 1 cut(s) 1505
MspI CCGG 2 cut(s) 1127, 1187
MspR9I CCNGG 2 cut(s) 1128, 1368
MssI GTTTAAAC 1 cut(s) 1264
MvaI CCWGG 1 cut(s) 1368
MvnI CGCG 3 cut(s) 243, 330, 1349
MwoI GCNNNNNNNGC 4 cut(s) 275, 284, 715, 1117
NciI CCSGG 1 cut(s) 1128
NcoI CCATGG 1 cut(s) 1491
NlaIII CATG 4 cut(s) 598, 841, 1462, 1495
NmeAIII GCCGAG 1 cut(s) 254
NmuCI GTSAC 1 cut(s) 332
OliI CACNNNNGTG 1 cut(s) 950
PaeR7I CTCGAG 1 cut(s) 455
PcsI WCGNNNNNNNCGW 2 cut(s) 115, 472
PfeI GAWTC 4 cut(s) 787, 1000, 1028, 1398
PfoI TCCNGGA 1 cut(s) 1366
PkrI GCNGC 3 cut(s) 7, 559, 1471
PleI GAGTC 2 cut(s) 358, 664
PmeI GTTTAAAC 1 cut(s) 1264
PpsI GAGTC 2 cut(s) 358, 664
PshBI ATTAAT 1 cut(s) 1052
Psp124BI GAGCTC 1 cut(s) 984
Psp6I CCWGG 1 cut(s) 1366
PspGI CCWGG 1 cut(s) 1366
PspPI GGNCC 3 cut(s) 224, 304, 443
PspXI VCTCGAGB 1 cut(s) 455
PstNI CAGNNNCTG 1 cut(s) 941
PsuI RGATCY 5 cut(s) 294, 723, 922, 1231, 1249
RseI CAYNNNNRTG 1 cut(s) 950
SacI GAGCTC 1 cut(s) 984
SacII CCGCGG 1 cut(s) 1350
SaqAI TTAA 7 cut(s) 405, 711, 987, 1052, 1209, 1263, 1506
SatI GCNGC 3 cut(s) 6, 558, 1470
Sau96I GGNCC 3 cut(s) 224, 304, 443
SchI GAGTC 2 cut(s) 359, 665
ScrFI CCNGG 2 cut(s) 1128, 1368
SduI GDGCHC 5 cut(s) 107, 137, 822, 984, 1514
SfaNI GCATC 2 cut(s) 1129, 1292
SfiI GGCCNNNNNGGCC 1 cut(s) 284
Sfr274I CTCGAG 1 cut(s) 455
Sfr303I CCGCGG 1 cut(s) 1350
SgrBI CCGCGG 1 cut(s) 1350
SinI GGWCC 2 cut(s) 224, 443
SlaI CTCGAG 1 cut(s) 455
SmiMI CAYNNNNRTG 1 cut(s) 950
SmlI CTYRAG 2 cut(s) 455, 1505
SmoI CTYRAG 2 cut(s) 455, 1505
Sse9I AATT 6 cut(s) 153, 407, 635, 1053, 1237, 1437
SspMI CTAG 4 cut(s) 372, 488, 1379, 1394
SstI GAGCTC 1 cut(s) 984
StyD4I CCNGG 2 cut(s) 1126, 1366
StyI CCWWGG 1 cut(s) 1491
TaaI ACNGT 2 cut(s) 732, 966
TaqI TCGA 6 cut(s) 456, 654, 659, 768, 1026, 1525
TasI AATT 6 cut(s) 153, 407, 635, 1053, 1237, 1437
TfiI GAWTC 4 cut(s) 787, 1000, 1028, 1398
Tru1I TTAA 7 cut(s) 405, 711, 987, 1052, 1209, 1263, 1506
Tru9I TTAA 7 cut(s) 405, 711, 987, 1052, 1209, 1263, 1506
TscAI CASTG 4 cut(s) 288, 735, 971, 1427
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 3 cut(s) 5, 557, 1469
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 4 cut(s) 28, 34, 539, 1475
TspGWI ACGGA 1 cut(s) 464
TspRI CASTG 4 cut(s) 288, 735, 971, 1427
Vha464I CTTAAG 1 cut(s) 1505
VneI GTGCAC 1 cut(s) 1510
VpaK11BI GGWCC 2 cut(s) 224, 443
VspI ATTAAT 1 cut(s) 1052
XapI RAATTY 2 cut(s) 407, 635
XhoI CTCGAG 1 cut(s) 455
XmiI GTMKAC 1 cut(s) 1552
XspI CTAG 4 cut(s) 372, 488, 1379, 1394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.