AT5G42580

cytochrome P450

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
17023502 .. 17025361
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42580.1

Sequence Viewer

Length: 1500 bp
ATGGCAGAACTCATCATCGTTGACTTTCAAAACATATCTATCTTCATCCTCTTATGTCTCTTCTCATTCCTTTGTTACGCTCTCTTCTTCAAGAAACCAAAAGGCTTTGACCTGCCTCCGAGCCCTCCTTCTCTACCAATCATCGGTCATCTTCACCATCTTCTCTCATCATCTCTACCACACAAGTCCTTTCAAAAACTCTCCTTCAAGTATGGACCTCTTCTCCATCTCCGCATCTTTAATTTCCCCATGGTCCTCGTCTCATCAGCCTCAATGGCCTACGAGGTCTTCAGGACAAACGACGTAAACGTCTCGTATCGCTTTGTCCCAGTCAACAAAGACTCTCTAGTGTTCGGATCTTCAGGATTCGTAACCGCTCCTTATGGAGATTACTGGAAGTTCATGAAGAAGCTCATATCCACGAAACTACTCCGACCACATGCACTCGAGCTGTCGAAAGGTAACCGTGCAGAGGAGCTACGTCGGTTTTGCCTTGATCTGCAAGGTAAGGCGAGGAAGAAGGAGAGCGTTGAGATCGGTAAAGTAGCACTAAAGCTCACTAACAACATCATATGTAGGATGAGCATGGGAAGGAGTTGTTCAGAGAAGAACGGTGTAGCGGAGAGAGCAAGGGAATTGGTTAACAAATCCTTTGCCTTATCAGTGAAGCTCTTCTTTTCAAACATGTTCAGAAAAGATATAATGGGAGTTTCTCGTGAATTCGACGAGTTTCTTGAGAGGATTCTAGTGGAACACGAGGAGAACCTTGAGGGGGATCAAGATAGGGACATGATTGATCATTTGTTGGAAGCTTATAGAAACGAAGAAGCAGAATATAAGATCACTAGAAAACAGATCAAGTCTTTAATTGTGGAAATTTTTCTTGGAGGCACTGACAGCTCGGCGCAGACGATACAATGGACTATGGCGGAGATACTTAACAACCCCGGCGTTCTCGAGAAATTAAGAGCAGAAATCGATTCCGTTGTGGGGGGAAAAAGGTTGATTCAAGAATCAGATCTTCCAAACCTCCCTTATTTGCAAGCTGTTGTTAAAGAAGGGCTAAGATTGCATCCCTCGGCTCCTGTCTTGTTAAGGGTATTTGGAGAAAGTTGCGAGGTCAAAGAGTTCTACGTACCGGAGAAAACAACACTTGTTGTTAATCTCTATGCTGTGAATAGAGATCCTGATTCTTGGGAAGATCCTGATATGTTTAAGCCAGAGAGGTTTTTAGTTTCTTCGATATCAGGAGATGAAGAAAAGATAAGAGAGCAAGCCGTGAAGTATGTTACTTTTGGAGGTGGAAGGAGGACATGTCCCGCGGTAAAACTAGCTCATATCTTTATGGAAACTGCGATTGGAGCGATGGTGCAGTGTTTTGACTGGAGAATTAAAGGAGAGAAAGTATACATGGAAGAGGCTGTTTCAGGACTTAGTTTGAAAATGGCTCATCCGCTTAAGTGCACTCCTGTTGTTCGGTTCGACCCTTTCAGCTTTTGA

Protein Analysis

499

Amino Acids

56.88

Weight (kDa)

8.41

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 39 - 474 6.8e-85 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 308
Acc36I ACCTGC 1 cut(s) 120
AccBSI CCGCTC 1 cut(s) 377
AccI GTMKAC 1 cut(s) 1407
AccII CGCG 1 cut(s) 1322
AciI CCGC 7 cut(s) 232, 375, 620, 929, 1320, 1322, 1454
AclWI GGATC 4 cut(s) 364, 783, 1178, 1196
AcsI RAATTY 2 cut(s) 719, 876
AcuI CTGAAG 2 cut(s) 274, 345
AfaI GTAC 1 cut(s) 1137
AfiI CCNNNNNNNGG 4 cut(s) 143, 472, 772, 990
AflII CTTAAG 1 cut(s) 1457
AflIII ACRYGT 2 cut(s) 684, 1313
AgsI TTSAA 7 cut(s) 29, 91, 194, 208, 681, 1010, 1441
AjuI GAANNNNNNNTTGG 4 cut(s) 867, 899, 1341, 1373
Alw21I GWGCWC 1 cut(s) 1466
Alw26I GTCTC 3 cut(s) 62, 265, 316
Alw44I GTGCAC 1 cut(s) 1462
AlwI GGATC 4 cut(s) 364, 783, 1178, 1196
Ama87I CYCGRG 2 cut(s) 446, 956
AoxI GGCC 1 cut(s) 276
ApaLI GTGCAC 1 cut(s) 1462
ApoI RAATTY 2 cut(s) 719, 876
Asp700I GAANNNNTTC 2 cut(s) 671, 879
AspLEI GCGC 1 cut(s) 907
AspS9I GGNCC 2 cut(s) 215, 253
AsuC2I CCSGG 1 cut(s) 948
AsuHPI GGTGA 1 cut(s) 146
AvaI CYCGRG 2 cut(s) 446, 956
AvaII GGWCC 2 cut(s) 215, 253
BaeGI GKGCMC 1 cut(s) 1466
BanII GRGCYC 1 cut(s) 125
BauI CACGAG 2 cut(s) 714, 755
BbsI GAAGAC 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 1466
BccI CCATC 3 cut(s) 165, 234, 1360
BceAI ACGGC 1 cut(s) 1262
BclI TGATCA 1 cut(s) 796
BcnI CCSGG 1 cut(s) 948
BcoDI GTCTC 3 cut(s) 62, 265, 316
BfaI CTAG 4 cut(s) 347, 746, 846, 1331
BfrI CTTAAG 1 cut(s) 1457
BfuAI ACCTGC 1 cut(s) 120
BglI GCCNNNNNGGC 1 cut(s) 275
BglII AGATCT 1 cut(s) 1018
Bme1390I CCNGG 1 cut(s) 948
Bme18I GGWCC 2 cut(s) 215, 253
BmeT110I CYCGRG 2 cut(s) 446, 956
BmgT120I GGNCC 2 cut(s) 215, 253
BmiI GGNNCC 1 cut(s) 1083
BmrFI CCNGG 1 cut(s) 948
BmrI ACTGGG 1 cut(s) 323
BmsI GCATC 2 cut(s) 243, 1081
BmuI ACTGGG 1 cut(s) 323
BpiI GAAGAC 1 cut(s) 280
BpmI CTGGAG 1 cut(s) 1405
BpuEI CTTGAG 2 cut(s) 755, 788
BpuMI CCSGG 1 cut(s) 948
Bsa29I ATCGAT 1 cut(s) 978
BsaAI YACGTR 1 cut(s) 1135
BsaJI CCNNGG 4 cut(s) 249, 946, 1077, 1320
BsaWI WCCGGW 1 cut(s) 1138
BsaXI ACNNNNNCTCC 8 cut(s) 207, 237, 1300, 1330, 1353, 1383, 1389, 1419
Bsc4I CCNNNNNNNGG 4 cut(s) 143, 472, 772, 990
Bse1I ACTGG 3 cut(s) 329, 398, 1388
BseCI ATCGAT 1 cut(s) 978
BseDI CCNNGG 4 cut(s) 249, 946, 1077, 1320
BseGI GGATG 4 cut(s) 45, 585, 1072, 1450
BseLI CCNNNNNNNGG 4 cut(s) 143, 472, 772, 990
BseNI ACTGG 3 cut(s) 329, 398, 1388
BseRI GAGGAG 2 cut(s) 488, 773
BseSI GKGCMC 1 cut(s) 1466
BsgI GTGCAG 2 cut(s) 489, 1391
Bsh1236I CGCG 1 cut(s) 1322
BshFI GGCC 1 cut(s) 278
BshVI ATCGAT 1 cut(s) 978
BsiHKAI GWGCWC 1 cut(s) 1466
BsiHKCI CYCGRG 2 cut(s) 446, 956
BsiSI CCGG 2 cut(s) 948, 1139
BslFI GGGAC 3 cut(s) 311, 800, 1302
BslI CCNNNNNNNGG 4 cut(s) 143, 472, 772, 990
BsmAI GTCTC 3 cut(s) 62, 265, 316
BsmBI CGTCTC 2 cut(s) 265, 316
BsmFI GGGAC 3 cut(s) 311, 800, 1302
BsnI GGCC 1 cut(s) 278
BsoBI CYCGRG 2 cut(s) 446, 956
Bsp1286I GDGCHC 2 cut(s) 125, 1466
Bsp19I CCATGG 1 cut(s) 249
BspACI CCGC 7 cut(s) 232, 375, 620, 929, 1320, 1322, 1454
BspANI GGCC 1 cut(s) 278
BspDI ATCGAT 1 cut(s) 978
BspFNI CGCG 1 cut(s) 1322
BspHI TCATGA 1 cut(s) 402
BspLI GGNNCC 1 cut(s) 1083
BspMI ACCTGC 1 cut(s) 120
BspPI GGATC 4 cut(s) 364, 783, 1178, 1196
BspQI GCTCTTC 1 cut(s) 677
BspTI CTTAAG 1 cut(s) 1457
BsrBI CCGCTC 1 cut(s) 377
BsrI ACTGG 3 cut(s) 329, 398, 1388
BssECI CCNNGG 4 cut(s) 249, 946, 1077, 1320
BssNAI GTATAC 1 cut(s) 1408
BssSI CACGAG 2 cut(s) 714, 755
BssT1I CCWWGG 1 cut(s) 249
Bst1107I GTATAC 1 cut(s) 1408
Bst2BI CACGAG 2 cut(s) 714, 755
Bst4CI ACNGT 2 cut(s) 467, 614
Bst6I CTCTTC 5 cut(s) 65, 89, 225, 677, 1410
BstAFI CTTAAG 1 cut(s) 1457
BstBAI YACGTR 1 cut(s) 1135
BstC8I GCNNGC 2 cut(s) 1044, 1275
BstDEI CTNAG 2 cut(s) 1064, 1433
BstDSI CCRYGG 2 cut(s) 249, 1320
BstEII GGTNACC 1 cut(s) 461
BstF5I GGATG 4 cut(s) 45, 585, 1072, 1450
BstFNI CGCG 1 cut(s) 1322
BstHHI GCGC 1 cut(s) 907
BstMAI GTCTC 3 cut(s) 62, 265, 316
BstMWI GCNNNNNNNGC 5 cut(s) 275, 626, 897, 1069, 1361
BstNSI RCATGY 3 cut(s) 443, 688, 1317
BstPI GGTNACC 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 946
BstSLI GKGCMC 1 cut(s) 1466
BstSNI TACGTA 1 cut(s) 1135
BstUI CGCG 1 cut(s) 1322
BstV2I GAAGAC 1 cut(s) 280
BstX2I RGATCY 4 cut(s) 356, 1018, 1183, 1201
BstYI RGATCY 4 cut(s) 356, 1018, 1183, 1201
BstZ17I GTATAC 1 cut(s) 1408
Bsu15I ATCGAT 1 cut(s) 978
BsuRI GGCC 1 cut(s) 278
BsuTUI ATCGAT 1 cut(s) 978
BtgI CCRYGG 2 cut(s) 249, 1320
BtgZI GCGATG 1 cut(s) 1379
BtsCI GGATG 4 cut(s) 45, 585, 1072, 1450
BtsI GCAGTG 1 cut(s) 1379
BtsIMutI CAGTG 3 cut(s) 669, 891, 1379
BveI ACCTGC 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 1044, 1275
CciI TCATGA 1 cut(s) 402
CfoI GCGC 1 cut(s) 907
Cfr13I GGNCC 2 cut(s) 215, 253
Cfr42I CCGCGG 1 cut(s) 1323
ClaI ATCGAT 1 cut(s) 978
Csp6I GTAC 1 cut(s) 1136
CviAII CATG 8 cut(s) 250, 403, 440, 586, 685, 790, 1314, 1411
CviQI GTAC 1 cut(s) 1136
DdeI CTNAG 2 cut(s) 1064, 1433
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
Eam1104I CTCTTC 5 cut(s) 65, 89, 225, 677, 1410
EarI CTCTTC 5 cut(s) 65, 89, 225, 677, 1410
EciI GGCGGA 1 cut(s) 944
Eco105I TACGTA 1 cut(s) 1135
Eco130I CCWWGG 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 125
Eco32I GATATC 1 cut(s) 1245
Eco47I GGWCC 2 cut(s) 215, 253
Eco57I CTGAAG 2 cut(s) 274, 345
Eco88I CYCGRG 2 cut(s) 446, 956
Eco91I GGTNACC 1 cut(s) 461
EcoO65I GGTNACC 1 cut(s) 461
EcoRI GAATTC 1 cut(s) 719
EcoRV GATATC 1 cut(s) 1245
EcoT14I CCWWGG 1 cut(s) 249
EcoT38I GRGCYC 1 cut(s) 125
ErhI CCWWGG 1 cut(s) 249
Esp3I CGTCTC 2 cut(s) 265, 316
FaeI CATG 8 cut(s) 253, 406, 443, 589, 688, 793, 1317, 1414
FalI AAGNNNNNCTT 2 cut(s) 659, 691
FaqI GGGAC 3 cut(s) 311, 800, 1302
FatI CATG 8 cut(s) 249, 402, 439, 585, 684, 789, 1313, 1410
FauI CCCGC 1 cut(s) 1327
FauNDI CATATG 1 cut(s) 572
FbaI TGATCA 1 cut(s) 796
FblI GTMKAC 1 cut(s) 1407
FokI GGATG 4 cut(s) 32, 592, 1059, 1437
FriOI GRGCYC 1 cut(s) 125
FspBI CTAG 4 cut(s) 347, 746, 846, 1331
GlaI GCGC 1 cut(s) 906
GsuI CTGGAG 1 cut(s) 1405
HaeIII GGCC 1 cut(s) 278
HapII CCGG 2 cut(s) 948, 1139
HhaI GCGC 1 cut(s) 907
Hin1II CATG 8 cut(s) 253, 406, 443, 589, 688, 793, 1317, 1414
Hin6I GCGC 1 cut(s) 905
HinP1I GCGC 1 cut(s) 905
HincII GTYRAC 3 cut(s) 22, 334, 643
HindII GTYRAC 3 cut(s) 22, 334, 643
HindIII AAGCTT 1 cut(s) 810
HinfI GANTC 7 cut(s) 341, 366, 742, 980, 1006, 1013, 1190
HpaI GTTAAC 1 cut(s) 643
HpaII CCGG 2 cut(s) 948, 1139
HphI GGTGA 1 cut(s) 146
Hpy166II GTNNAC 6 cut(s) 22, 307, 334, 643, 1408, 1464
Hpy188I TCNGA 6 cut(s) 120, 356, 434, 604, 692, 1018
Hpy8I GTNNAC 6 cut(s) 22, 307, 334, 643, 1408, 1464
Hpy99I CGWCG 3 cut(s) 305, 486, 728
HpyAV CCTTC 6 cut(s) 138, 214, 514, 585, 1052, 1299
HpyCH4III ACNGT 2 cut(s) 467, 614
HpyCH4IV ACGT 4 cut(s) 303, 309, 481, 1134
HpyCH4V TGCA 7 cut(s) 443, 470, 502, 1042, 1072, 1372, 1464
HpyF10VI GCNNNNNNNGC 5 cut(s) 275, 626, 897, 1069, 1361
HpyF3I CTNAG 2 cut(s) 1064, 1433
HpySE526I ACGT 4 cut(s) 303, 309, 481, 1134
Hsp92II CATG 8 cut(s) 253, 406, 443, 589, 688, 793, 1317, 1414
HspAI GCGC 1 cut(s) 905
Ksp22I TGATCA 1 cut(s) 796
KspAI GTTAAC 1 cut(s) 643
KspI CCGCGG 1 cut(s) 1323
LguI GCTCTTC 1 cut(s) 677
LmnI GCTCC 4 cut(s) 382, 475, 1087, 1361
LweI GCATC 2 cut(s) 243, 1081
MaeI CTAG 4 cut(s) 347, 746, 846, 1331
MaeII ACGT 4 cut(s) 303, 309, 481, 1134
MaeIII GTNAC 4 cut(s) 74, 370, 461, 1288
MbiI CCGCTC 1 cut(s) 377
MflI RGATCY 4 cut(s) 356, 1018, 1183, 1201
MhlI GDGCHC 2 cut(s) 125, 1466
MluCI AATT 7 cut(s) 241, 635, 719, 867, 876, 962, 1389
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 2 cut(s) 457, 786
MroXI GAANNNNTTC 2 cut(s) 671, 879
MspA1I CMGCKG 1 cut(s) 1322
MspCI CTTAAG 1 cut(s) 1457
MspI CCGG 2 cut(s) 948, 1139
MspR9I CCNGG 1 cut(s) 948
MvnI CGCG 1 cut(s) 1322
MwoI GCNNNNNNNGC 5 cut(s) 275, 626, 897, 1069, 1361
NciI CCSGG 1 cut(s) 948
NcoI CCATGG 1 cut(s) 249
NdeI CATATG 1 cut(s) 572
NlaIII CATG 8 cut(s) 253, 406, 443, 589, 688, 793, 1317, 1414
NlaIV GGNNCC 1 cut(s) 1083
NmeAIII GCCGAG 2 cut(s) 881, 1058
NspI RCATGY 3 cut(s) 443, 688, 1317
PaeR7I CTCGAG 2 cut(s) 446, 956
PagI TCATGA 1 cut(s) 402
PciI ACATGT 2 cut(s) 684, 1313
PciSI GCTCTTC 1 cut(s) 677
PcsI WCGNNNNNNNCGW 2 cut(s) 306, 908
PdmI GAANNNNTTC 2 cut(s) 671, 879
PfeI GAWTC 6 cut(s) 366, 742, 980, 1006, 1013, 1190
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Ppu21I YACGTR 1 cut(s) 1135
PscI ACATGT 2 cut(s) 684, 1313
PspEI GGTNACC 1 cut(s) 461
PspN4I GGNNCC 1 cut(s) 1083
PspPI GGNCC 2 cut(s) 215, 253
PspXI VCTCGAGB 1 cut(s) 446
PsuI RGATCY 4 cut(s) 356, 1018, 1183, 1201
RsaI GTAC 1 cut(s) 1137
RsaNI GTAC 1 cut(s) 1136
SacII CCGCGG 1 cut(s) 1323
SapI GCTCTTC 1 cut(s) 677
Sau96I GGNCC 2 cut(s) 215, 253
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 948
SduI GDGCHC 2 cut(s) 125, 1466
SfaNI GCATC 2 cut(s) 243, 1081
Sfr274I CTCGAG 2 cut(s) 446, 956
Sfr303I CCGCGG 1 cut(s) 1323
SgrBI CCGCGG 1 cut(s) 1323
SinI GGWCC 2 cut(s) 215, 253
SlaI CTCGAG 2 cut(s) 446, 956
SmlI CTYRAG 5 cut(s) 446, 734, 767, 956, 1457
SmoI CTYRAG 5 cut(s) 446, 734, 767, 956, 1457
SnaBI TACGTA 1 cut(s) 1135
Sse9I AATT 7 cut(s) 241, 635, 719, 867, 876, 962, 1389
SsiI CCGC 7 cut(s) 232, 375, 620, 929, 1320, 1322, 1454
SspMI CTAG 4 cut(s) 347, 746, 846, 1331
StyD4I CCNGG 1 cut(s) 946
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 2 cut(s) 467, 614
TaiI ACGT 4 cut(s) 306, 312, 484, 1137
TaqI TCGA 7 cut(s) 447, 455, 723, 957, 978, 1241, 1482
TaqII GACCGA 1 cut(s) 134
TasI AATT 7 cut(s) 241, 635, 719, 867, 876, 962, 1389
TfiI GAWTC 6 cut(s) 366, 742, 980, 1006, 1013, 1190
TscAI CASTG 3 cut(s) 669, 898, 1379
TspDTI ATGAA 4 cut(s) 34, 391, 419, 1269
TspGWI ACGGA 1 cut(s) 973
TspRI CASTG 3 cut(s) 669, 898, 1379
Vha464I CTTAAG 1 cut(s) 1457
VneI GTGCAC 1 cut(s) 1462
VpaK11BI GGWCC 2 cut(s) 215, 253
XapI RAATTY 2 cut(s) 719, 876
XceI RCATGY 3 cut(s) 443, 688, 1317
XhoI CTCGAG 2 cut(s) 446, 956
XmiI GTMKAC 1 cut(s) 1407
XmnI GAANNNNTTC 2 cut(s) 671, 879
XspI CTAG 4 cut(s) 347, 746, 846, 1331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.