AT3G20080

cytochrome P450

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
7007869 .. 7013694
5826 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G20080.2

Sequence Viewer

Length: 1572 bp
ATGGCAGCAATGAACATCGTTGACTTTCAAAACTGCTTCTTTTTTGTCCTCTTAAGCCTCTTCTCACTTCTCTGTTACTCTCTCTTCTTCAGGAAACCAAAGGAACCTCGACTTCACTATGATTTACCTCCGAGCCCTCCGACTCTTCCCATCATTGGTCATCTTCACCTTCTTCTCTCTGTTCTAGTCCACAGATCTTTACAGACACTCTCCACCAAGTATGGGTCTATTCTCTATCTTCGCGTCTTCAGTTTCCCTGTAGCCCTCGTCTCCTCAGCATCTATTGCTTATGAGATCTTCAGGGAACACGACGTGAACATCTCGTCTCGTGGTTTCCCTCCTACCGATGATTCCCTTTTTGCTGGATCTTTCAGCTTCACCTCTGCTCCCTATGGAGATTACTGGAAGTTCATGAAGAAGCTCCTGGTCACGAACTTGCTTGGACCCCAGGCACTCGAGCGGTCACGAGGATTCCGTGCAGATGAGCTAGATCTGTTTTACGAGAACCTGTTGGATAAAGCGATGAAGAAGGAGAGCGTGGATATCTGTGTGGAGGCGTTGAAGCTCAGTAACAACAGCATCTGCAAGATGATCATGGGGAGGAGTTGTTCAGAGGAGAATGGTGAGGCAGAGAGAGTTAGGGCTTTGGCTACCCAGTTAGATGGCTTGACGAAGAAGATCTTATTGGCGAACATGTTGCGTGCGGGGTTTAAAAAGCTTGTTGTCTCACTGTTTAGAAAGGAAATGATGGATGTTTCCAGCAGATTTGATGAGCTGCTCGAAAGGATCCTTGTGGAACATGAAGATAAACTGGACATGCATCATCAAGGTACAGACTTAGTGGACGCGTTGTTGGCAGCTTGTCGGGACAAAAATGCAGAGTATAAGATCTCTAGGAACCATATCAAGTCGTTTTTCGCGGATCTCTTATTTGCAAGCACTGACACCTTTGTGCAAACAACACAGTGGACAGTGGCGGAGATCATTAATAACCCTAATGTTCTTGAGAGATTGAGAGGAGAAATCGATTCCGTGGTCGGGAAAGCAAGGTTGATTCAAGAAACTGATTTGCCAAACCTCCCTTATTTGCAAGCGGTGGTCAAGGAAGGGCTAAGACTGCATCCGCCGGGGCCTCTCTTTGCAAGGTTCTCCCAAGAAGGGTGTAGGATCGGAGGGTTCTATGTACCGGAGAAAACAACATTAATGATTAATGCTTATGCTGTGATGAGAGATTCTGATTCTTGGGAAGATCCTGATGAGTTTAAACCAGAGAGGTTTCTAGCTTCGTCAAGATCAGAGCAGGAAAAGGAGAGAAGAGAGCAAGCAATTAAGTACATTGCTTTCGGAAGCGGACGAAGAAGCTGTCCTGGAGAAAATCTAGCATATATCTTTTTAGGAACTGCAATTGGAGTGATGGTACAGGGATTTGAGTGGAGAATCAAAGAAGAGAAAGTTAACATGGAAGAGGCTAATGTAGGACTGAGCTTGACCATGGCTTATCCTCTTAAGGTCACTCCTGTTCCTCGAACCCTAGTCCCCTTAACTCAGAATCCACTGAACCGGAGTTCATGA

Protein Analysis

523

Amino Acids

59.36

Weight (kDa)

6.82

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 43 - 495 1.3e-84 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 460
AccII CGCG 3 cut(s) 243, 848, 920
AciI CCGC 7 cut(s) 460, 704, 920, 977, 1094, 1124, 1350
AclWI GGATC 6 cut(s) 373, 781, 794, 930, 1175, 1244
AcuI CTGAAG 3 cut(s) 73, 232, 283
AdeI CACNNNGTG 1 cut(s) 313
AfaI GTAC 4 cut(s) 832, 1185, 1334, 1419
AfiI CCNNNNNNNGG 4 cut(s) 155, 222, 1038, 1158
AflII CTTAAG 2 cut(s) 52, 1505
AflIII ACRYGT 2 cut(s) 693, 846
AgsI TTSAA 3 cut(s) 29, 562, 1058
AjiI CACGTC 1 cut(s) 313
AjnI CCWGG 3 cut(s) 423, 447, 1366
AjuI GAANNNNNNNTTGG 2 cut(s) 668, 700
AleI CACNNNNGTG 1 cut(s) 950
AloI GAACNNNNNNTCC 2 cut(s) 592, 624
Alw26I GTCTC 3 cut(s) 274, 330, 730
AlwI GGATC 6 cut(s) 373, 781, 794, 930, 1175, 1244
AlwNI CAGNNNCTG 1 cut(s) 582
Ama87I CYCGRG 1 cut(s) 455
AoxI GGCC 1 cut(s) 1130
ApeKI GCWGC 3 cut(s) 5, 775, 857
ArsI GACNNNNNNTTYG 2 cut(s) 1348, 1380
AseI ATTAAT 3 cut(s) 987, 1202, 1209
AspS9I GGNCC 2 cut(s) 443, 1130
AsuC2I CCSGG 1 cut(s) 1128
AsuHPI GGTGA 3 cut(s) 158, 370, 635
AvaI CYCGRG 1 cut(s) 455
AvaII GGWCC 1 cut(s) 443
BamHI GGATCC 1 cut(s) 786
BanII GRGCYC 1 cut(s) 137
BauI CACGAG 2 cut(s) 327, 465
BbsI GAAGAC 1 cut(s) 238
BbvCI CCTCAGC 1 cut(s) 274
BbvI GCAGC 3 cut(s) 17, 762, 869
BccI CCATC 4 cut(s) 158, 656, 742, 1408
BcgI CGANNNNNNTGC 2 cut(s) 679, 713
BciT130I CCWGG 3 cut(s) 425, 449, 1368
BclI TGATCA 1 cut(s) 591
BcnI CCSGG 1 cut(s) 1128
BcoDI GTCTC 3 cut(s) 274, 330, 730
BfaI CTAG 6 cut(s) 185, 488, 894, 1280, 1379, 1532
BfmI CTRYAG 1 cut(s) 258
BfrI CTTAAG 2 cut(s) 52, 1505
BglII AGATCT 5 cut(s) 194, 294, 490, 678, 888
BisI GCNGC 3 cut(s) 6, 776, 858
BlsI GCNGC 3 cut(s) 7, 777, 859
Bme1390I CCNGG 4 cut(s) 425, 449, 1128, 1368
Bme18I GGWCC 1 cut(s) 443
BmeT110I CYCGRG 1 cut(s) 455
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 2 cut(s) 443, 1130
BmiI GGNNCC 5 cut(s) 105, 445, 788, 899, 1131
BmrFI CCNGG 4 cut(s) 425, 449, 1128, 1368
BmrI ACTGGG 1 cut(s) 649
BmsI GCATC 4 cut(s) 287, 588, 829, 1129
BmuI ACTGGG 1 cut(s) 649
BpiI GAAGAC 1 cut(s) 238
BpmI CTGGAG 1 cut(s) 1389
Bpu10I CCTNAGC 1 cut(s) 274
BpuEI CTTGAG 1 cut(s) 1025
BpuMI CCSGG 1 cut(s) 1128
Bsa29I ATCGAT 1 cut(s) 1026
BsaJI CCNNGG 4 cut(s) 447, 1032, 1127, 1491
BsaWI WCCGGW 2 cut(s) 1186, 1560
BsaXI ACNNNNNCTCC 6 cut(s) 370, 400, 592, 622, 1401, 1431
Bsc4I CCNNNNNNNGG 4 cut(s) 155, 222, 1038, 1158
Bse1I ACTGG 3 cut(s) 407, 655, 816
Bse3DI GCAATG 2 cut(s) 15, 1335
BseBI CCWGG 3 cut(s) 425, 449, 1368
BseCI ATCGAT 1 cut(s) 1026
BseDI CCNNGG 4 cut(s) 447, 1032, 1127, 1491
BseGI GGATG 2 cut(s) 757, 1120
BseLI CCNNNNNNNGG 4 cut(s) 155, 222, 1038, 1158
BseMI GCAATG 2 cut(s) 15, 1335
BseMII CTCAG 4 cut(s) 288, 580, 1472, 1559
BseNI ACTGG 3 cut(s) 407, 655, 816
BseRI GAGGAG 4 cut(s) 262, 616, 629, 1032
BseXI GCAGC 3 cut(s) 17, 762, 869
BsgI GTGCAG 1 cut(s) 498
Bsh1236I CGCG 3 cut(s) 243, 848, 920
BshFI GGCC 1 cut(s) 1132
BshVI ATCGAT 1 cut(s) 1026
BsiHKCI CYCGRG 1 cut(s) 455
BsiSI CCGG 3 cut(s) 1127, 1187, 1561
BslFI GGGAC 2 cut(s) 881, 1520
BslI CCNNNNNNNGG 4 cut(s) 155, 222, 1038, 1158
BsmAI GTCTC 3 cut(s) 274, 330, 730
BsmBI CGTCTC 2 cut(s) 274, 330
BsmFI GGGAC 2 cut(s) 881, 1520
BsnI GGCC 1 cut(s) 1132
BsoBI CYCGRG 1 cut(s) 455
Bsp1286I GDGCHC 1 cut(s) 137
Bsp19I CCATGG 1 cut(s) 1491
BspACI CCGC 7 cut(s) 460, 704, 920, 977, 1094, 1124, 1350
BspANI GGCC 1 cut(s) 1132
BspCNI CTCAG 4 cut(s) 287, 579, 1473, 1558
BspDI ATCGAT 1 cut(s) 1026
BspFNI CGCG 3 cut(s) 243, 848, 920
BspHI TCATGA 2 cut(s) 411, 1568
BspLI GGNNCC 5 cut(s) 105, 445, 788, 899, 1131
BspPI GGATC 6 cut(s) 373, 781, 794, 930, 1175, 1244
BspTI CTTAAG 2 cut(s) 52, 1505
BsrBI CCGCTC 1 cut(s) 460
BsrDI GCAATG 2 cut(s) 15, 1335
BsrI ACTGG 3 cut(s) 407, 655, 816
BssECI CCNNGG 4 cut(s) 447, 1032, 1127, 1491
BssSI CACGAG 2 cut(s) 327, 465
BssT1I CCWWGG 1 cut(s) 1491
Bst2BI CACGAG 2 cut(s) 327, 465
Bst2UI CCWGG 3 cut(s) 425, 449, 1368
Bst4CI ACNGT 3 cut(s) 732, 966, 973
Bst6I CTCTTC 6 cut(s) 65, 89, 150, 1309, 1440, 1458
BstAFI CTTAAG 2 cut(s) 52, 1505
BstAPI GCANNNNNTGC 1 cut(s) 284
BstC8I GCNNGC 4 cut(s) 702, 937, 1092, 1323
BstDEI CTNAG 6 cut(s) 274, 566, 838, 1112, 1481, 1545
BstDSI CCRYGG 2 cut(s) 1032, 1491
BstF5I GGATG 2 cut(s) 757, 1120
BstFNI CGCG 3 cut(s) 243, 848, 920
BstMAI GTCTC 3 cut(s) 274, 330, 730
BstMWI GCNNNNNNNGC 3 cut(s) 284, 854, 1117
BstNI CCWGG 3 cut(s) 425, 449, 1368
BstNSI RCATGY 2 cut(s) 697, 820
BstSCI CCNGG 4 cut(s) 423, 447, 1126, 1366
BstSFI CTRYAG 1 cut(s) 258
BstUI CGCG 3 cut(s) 243, 848, 920
BstV1I GCAGC 3 cut(s) 17, 762, 869
BstV2I GAAGAC 1 cut(s) 238
BstX2I RGATCY 9 cut(s) 194, 294, 365, 490, 678, 786, 888, 922, 1249
BstXI CCANNNNNNTGG 1 cut(s) 662
BstYI RGATCY 9 cut(s) 194, 294, 365, 490, 678, 786, 888, 922, 1249
Bsu15I ATCGAT 1 cut(s) 1026
BsuRI GGCC 1 cut(s) 1132
BsuTUI ATCGAT 1 cut(s) 1026
BtgI CCRYGG 2 cut(s) 1032, 1491
BtgZI GCGATG 1 cut(s) 536
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 2 cut(s) 757, 1120
BtsIMutI CAGTG 5 cut(s) 728, 939, 971, 978, 1553
Cac8I GCNNGC 4 cut(s) 702, 937, 1092, 1323
CaiI CAGNNNCTG 1 cut(s) 582
CciI TCATGA 2 cut(s) 411, 1568
Cfr13I GGNCC 2 cut(s) 443, 1130
ClaI ATCGAT 1 cut(s) 1026
CseI GACGC 2 cut(s) 232, 854
Csp6I GTAC 4 cut(s) 831, 1184, 1333, 1418
CviAII CATG 8 cut(s) 412, 595, 694, 800, 817, 1459, 1492, 1569
CviQI GTAC 4 cut(s) 831, 1184, 1333, 1418
DdeI CTNAG 6 cut(s) 274, 566, 838, 1112, 1481, 1545
DraI TTTAAA 2 cut(s) 712, 1264
DraIII CACNNNGTG 1 cut(s) 313
Eam1104I CTCTTC 6 cut(s) 65, 89, 150, 1309, 1440, 1458
EarI CTCTTC 6 cut(s) 65, 89, 150, 1309, 1440, 1458
EciI GGCGGA 2 cut(s) 992, 1113
Eco130I CCWWGG 1 cut(s) 1491
Eco24I GRGCYC 1 cut(s) 137
Eco32I GATATC 1 cut(s) 544
Eco47I GGWCC 1 cut(s) 443
Eco57I CTGAAG 3 cut(s) 73, 232, 283
Eco88I CYCGRG 1 cut(s) 455
EcoO109I RGGNCCY 1 cut(s) 1130
EcoRII CCWGG 3 cut(s) 423, 447, 1366
EcoRV GATATC 1 cut(s) 544
EcoT14I CCWWGG 1 cut(s) 1491
EcoT22I ATGCAT 1 cut(s) 822
EcoT38I GRGCYC 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 1491
Esp3I CGTCTC 2 cut(s) 274, 330
FaeI CATG 8 cut(s) 415, 598, 697, 803, 820, 1462, 1495, 1572
FalI AAGNNNNNCTT 2 cut(s) 665, 697
FaqI GGGAC 2 cut(s) 881, 1520
FatI CATG 8 cut(s) 411, 594, 693, 799, 816, 1458, 1491, 1568
FauI CCCGC 1 cut(s) 697
FbaI TGATCA 1 cut(s) 591
Fnu4HI GCNGC 3 cut(s) 6, 776, 858
FokI GGATG 2 cut(s) 764, 1107
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 3 cut(s) 6, 776, 858
FspBI CTAG 6 cut(s) 185, 488, 894, 1280, 1379, 1532
GluI GCNGC 3 cut(s) 6, 776, 858
GsuI CTGGAG 1 cut(s) 1389
HaeIII GGCC 1 cut(s) 1132
HapII CCGG 3 cut(s) 1127, 1187, 1561
HgaI GACGC 2 cut(s) 232, 854
Hin1II CATG 8 cut(s) 415, 598, 697, 803, 820, 1462, 1495, 1572
HincII GTYRAC 2 cut(s) 22, 1456
HindII GTYRAC 2 cut(s) 22, 1456
HindIII AAGCTT 1 cut(s) 716
HinfI GANTC 9 cut(s) 142, 350, 471, 1028, 1054, 1232, 1238, 1437, 1549
HpaI GTTAAC 1 cut(s) 1456
HpaII CCGG 3 cut(s) 1127, 1187, 1561
HphI GGTGA 3 cut(s) 158, 370, 635
Hpy166II GTNNAC 6 cut(s) 22, 190, 316, 844, 969, 1456
Hpy188I TCNGA 8 cut(s) 132, 141, 613, 1172, 1237, 1297, 1346, 1548
Hpy8I GTNNAC 6 cut(s) 22, 190, 316, 844, 969, 1456
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 4 cut(s) 179, 523, 1100, 1151
HpyCH4III ACNGT 3 cut(s) 732, 966, 973
HpyCH4IV ACGT 1 cut(s) 312
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 854, 1117
HpyF3I CTNAG 6 cut(s) 274, 566, 838, 1112, 1481, 1545
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 8 cut(s) 415, 598, 697, 803, 820, 1462, 1495, 1572
Ksp22I TGATCA 1 cut(s) 591
KspAI GTTAAC 1 cut(s) 1456
LmnI GCTCC 2 cut(s) 391, 426
Lsp1109I GCAGC 3 cut(s) 17, 762, 869
LweI GCATC 4 cut(s) 287, 588, 829, 1129
MaeI CTAG 6 cut(s) 185, 488, 894, 1280, 1379, 1532
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 5 cut(s) 74, 427, 462, 569, 1510
MbiI CCGCTC 1 cut(s) 460
MfeI CAATTG 1 cut(s) 1404
MflI RGATCY 9 cut(s) 194, 294, 365, 490, 678, 786, 888, 922, 1249
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 2 cut(s) 1326, 1404
MluI ACGCGT 1 cut(s) 846
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 2 cut(s) 164, 492
Mph1103I ATGCAT 1 cut(s) 822
MslI CAYNNNNRTG 1 cut(s) 950
MspCI CTTAAG 2 cut(s) 52, 1505
MspI CCGG 3 cut(s) 1127, 1187, 1561
MspR9I CCNGG 4 cut(s) 425, 449, 1128, 1368
MssI GTTTAAAC 1 cut(s) 1264
MunI CAATTG 1 cut(s) 1404
MvaI CCWGG 3 cut(s) 425, 449, 1368
MvnI CGCG 3 cut(s) 243, 848, 920
MwoI GCNNNNNNNGC 3 cut(s) 284, 854, 1117
NciI CCSGG 1 cut(s) 1128
NcoI CCATGG 1 cut(s) 1491
NlaIII CATG 8 cut(s) 415, 598, 697, 803, 820, 1462, 1495, 1572
NlaIV GGNNCC 5 cut(s) 105, 445, 788, 899, 1131
NmuCI GTSAC 3 cut(s) 427, 462, 1510
NsiI ATGCAT 1 cut(s) 822
NspI RCATGY 2 cut(s) 697, 820
OliI CACNNNNGTG 1 cut(s) 950
PaeR7I CTCGAG 1 cut(s) 455
PagI TCATGA 2 cut(s) 411, 1568
PciI ACATGT 1 cut(s) 693
PcsI WCGNNNNNNNCGW 1 cut(s) 472
PfeI GAWTC 8 cut(s) 350, 471, 1028, 1054, 1232, 1238, 1437, 1549
PfoI TCCNGGA 1 cut(s) 1366
PkrI GCNGC 3 cut(s) 7, 777, 859
PleI GAGTC 1 cut(s) 136
PmeI GTTTAAAC 1 cut(s) 1264
PpsI GAGTC 1 cut(s) 136
PscI ACATGT 1 cut(s) 693
PshBI ATTAAT 3 cut(s) 987, 1202, 1209
Psp6I CCWGG 3 cut(s) 423, 447, 1366
PspGI CCWGG 3 cut(s) 423, 447, 1366
PspN4I GGNNCC 5 cut(s) 105, 445, 788, 899, 1131
PspPI GGNCC 2 cut(s) 443, 1130
PspXI VCTCGAGB 1 cut(s) 455
PstNI CAGNNNCTG 1 cut(s) 582
PsuI RGATCY 9 cut(s) 194, 294, 365, 490, 678, 786, 888, 922, 1249
RsaI GTAC 4 cut(s) 832, 1185, 1334, 1419
RsaNI GTAC 4 cut(s) 831, 1184, 1333, 1418
RseI CAYNNNNRTG 1 cut(s) 950
SatI GCNGC 3 cut(s) 6, 776, 858
Sau96I GGNCC 2 cut(s) 443, 1130
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 4 cut(s) 425, 449, 1128, 1368
SduI GDGCHC 1 cut(s) 137
SfaNI GCATC 4 cut(s) 287, 588, 829, 1129
SfcI CTRYAG 1 cut(s) 258
Sfr274I CTCGAG 1 cut(s) 455
SinI GGWCC 1 cut(s) 443
SlaI CTCGAG 1 cut(s) 455
SmiMI CAYNNNNRTG 1 cut(s) 950
SmlI CTYRAG 4 cut(s) 52, 455, 1004, 1505
SmoI CTYRAG 4 cut(s) 52, 455, 1004, 1505
Sse9I AATT 2 cut(s) 1326, 1404
SsiI CCGC 7 cut(s) 460, 704, 920, 977, 1094, 1124, 1350
SspMI CTAG 6 cut(s) 185, 488, 894, 1280, 1379, 1532
StyD4I CCNGG 4 cut(s) 423, 447, 1126, 1366
StyI CCWWGG 1 cut(s) 1491
TaaI ACNGT 3 cut(s) 732, 966, 973
TaiI ACGT 1 cut(s) 315
TaqI TCGA 5 cut(s) 109, 456, 780, 1026, 1525
TasI AATT 2 cut(s) 1326, 1404
TatI WGTACW 1 cut(s) 1332
TfiI GAWTC 8 cut(s) 350, 471, 1028, 1054, 1232, 1238, 1437, 1549
TscAI CASTG 5 cut(s) 735, 946, 971, 978, 1560
TseFI GTSAC 3 cut(s) 427, 462, 1510
TseI GCWGC 3 cut(s) 5, 775, 857
Tsp45I GTSAC 3 cut(s) 427, 462, 1510
TspDTI ATGAA 6 cut(s) 26, 400, 428, 539, 816, 1557
TspGWI ACGGA 2 cut(s) 464, 1021
TspRI CASTG 5 cut(s) 735, 946, 971, 978, 1560
Vha464I CTTAAG 2 cut(s) 52, 1505
VpaK11BI GGWCC 1 cut(s) 443
VspI ATTAAT 3 cut(s) 987, 1202, 1209
XceI RCATGY 2 cut(s) 697, 820
XhoI CTCGAG 1 cut(s) 455
XspI CTAG 6 cut(s) 185, 488, 894, 1280, 1379, 1532
Zsp2I ATGCAT 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.