Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000895

Physical Location & Seq

Genomic Coordinates Forward (+)

7334179 .. 7336013

Gene Structure 1835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20935.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGATCATGGGGAGGAGTTGTTCTGAAAAGAACGGTGAGGCCGAGAGAGTCAGAGGCTTGGTGATCGAGTCGCTGGCCTTGTCACCGAAAATCTTCTTGGGTATGATCTTTCACAAACCTCTTAAAAAGCTTGGGATCTCACTGTTCCAGAAGGATATAAAAAGTGTTTCCCCCAAGTTCGACGAGCTGCTGGAAAAGTTTCTTGTTGAACACGAAGAGAAAATGGAGGAGGATCATTATAAAGCTAATGACATGATGGATTTGTTGTTGGAAGCTATGGAGATGAGAATGCAGAACGTAAACCTTTGTATTAAGCGTGTTAGTAATACAAAGGCCCGAAAACCTCCGATACTCTTTAGATATGGAAAATACTCTAATAACAGTTTGCTACTACAGGAACTTCTCGTTGCAGGCACTGACACCTCGGCGCTAGCAACACAGTGGACAATGGCGGAGCTCATTAATAACCCTACCATTCTTGAGAGATTGCGAGAAGAAATCGAATCGGTTGTAGGGAATACAAGGTTAATTCAAGAAACTGATCTATCAAACCTCCCTTACTTGCAATCGGTAGTCAAAGAAGGGCTAAGATTGCATCCGCCGGCGTCTATCTCGGTAAGGATGTCCCAAGAAAGGTGTGAACTCGGAGGGTTCTACATACCGGAGAAGACATTACTTGTTGTTAATACTTATGCTATAATGAGAGATCCTAATTTCTGGGAAGATCCCGAGGAGTTTAAACCTGAGAGGTTTATAACATCTTCAAGATCAGAGCAAGAGGACGAGATGAGAGAGGAAGTCCTAAAATACATTCCTTTCTCAGCCGGAAGGAGAGGCTGTCCTGGATCGAATCTAGCTTATGTCTCTCTAGGAATCGCGATTGGAGTGATGGTACAGTGCTTTGATTGGAGAATCAAAGGAGAGAAAGTAAACATGAGCGAGACTGCTGGAACAATAATGTTGGCCATGGCTCAGCCACTTAAGTGCACTCCTGTTCCTCGCACCCTAAACCTTTTGCCATCAAGTCTACATATTCCCAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009506 GO:0009605 GO:0009606 GO:0009607 GO:0009620 GO:0009628 GO:0009629 GO:0009630 GO:0009812 GO:0009958 GO:0009987 GO:0010683 GO:0012505 GO:0016020 GO:0016491 GO:0016627 GO:0016705 GO:0016709 GO:0019748 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042214 GO:0042440 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046246 GO:0048364 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051552 GO:0051554 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071704 GO:0080003 GO:0080004 GO:0098542 GO:0099402 GO:1901360 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00590 ko00591 ko01100 ko04212 ko04726 ko04750 ko04913 map00590 map00591 map01100 map04212 map04726 map04750 map04913

Pfam Domains

Protein Families

p450

Protein Analysis

348

Amino Acids

39.53

Weight (kDa)

6.08

Isoelectric Point (pI)

49.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 321	1e-63	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28430 AT1G50520 AT1G50560 AT2G05180 AT2G14100 AT2G27000 AT2G27010 AT3G20080 AT3G20080 AT3G20080 AT3G20080 AT3G20080 AT3G20080 AT3G20090 AT3G20090 AT3G20100 AT3G20110 AT3G20120 AT3G20120 AT3G20120 AT3G20120 AT3G20130 AT3G20130 AT3G20140 AT3G20935 AT3G20940 AT3G20950 AT3G20960 AT3G20960 AT3G32047 AT4G15330 AT4G15330 AT4G15350 AT4G15360 AT4G15380 AT5G42580 AT5G47990
fragaria_vesca	FvH4_7g00640
malus_domestica	MD07G1006100.v1.1
prunus_persica	Prupe.2G008400_v2.0.a1 Prupe.2G008900_v2.0.a1 Prupe.4G287500_v2.0.a1
pyrus_communis	pycom07g00490
rosa_chinensis	RchiOBHm_Chr1g0314821 RchiOBHm_Chr1g0314871
rosa_laevigata	RLG00000030759 RLG00000030762
rosa_multiflora	Rmu_sc0002833.1_g000040 Rmu_sc0002833.1_g000046 Rmu_sc0010489.1_g000008 Rmu_sc0010489.1_g000015
rosa_roxburghii	Rroxscaffold_4G00331770 Rroxscaffold_4G00331860
rosa_rugosa	Rorug01G0002100 Rorug01G0002600
rosa_samantha	Rh1AG013000 Rh1AG013500 Rh1BG004600 Rh1BG005000 Rh1CG011500 Rh1CG011800 Rh1DG006300 Rh1DG006800
rosa_wichuraiana	Rw1G000560 Rw1G000610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	240, 755
AccI	GTMKAC	1 cut(s)	1027
AccII	CGCG	1 cut(s)	878
AciI	CCGC	2 cut(s)	452, 599
AclWI	GGATC	5 cut(s)	143, 240, 701, 719, 853
AcoI	YGGCCR	1 cut(s)	963
AcyI	GRCGYC	1 cut(s)	605
AfaI	GTAC	1 cut(s)	894
AfiI	CCNNNNNNNGG	1 cut(s)	633
AflII	CTTAAG	1 cut(s)	980
AgsI	TTSAA	3 cut(s)	209, 533, 765
AjnI	CCWGG	1 cut(s)	841
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AleI	CACNNNNGTG	1 cut(s)	982
AloI	GAACNNNNNNTCC	1 cut(s)	36
AluBI	AGCT	6 cut(s)	130, 187, 245, 275, 457, 857
AluI	AGCT	6 cut(s)	130, 187, 245, 275, 457, 857
Alw21I	GWGCWC	2 cut(s)	459, 989
Alw26I	GTCTC	2 cut(s)	868, 935
Alw44I	GTGCAC	1 cut(s)	985
AlwI	GGATC	5 cut(s)	143, 240, 701, 719, 853
AlwNI	CAGNNNCTG	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	728
AoxI	GGCC	4 cut(s)	39, 75, 333, 963
ApaLI	GTGCAC	1 cut(s)	985
ApeKI	GCWGC	1 cut(s)	187
AseI	ATTAAT	1 cut(s)	462
Asp700I	GAANNNNTTC	2 cut(s)	92, 198
AspLEI	GCGC	1 cut(s)	430
AspS9I	GGNCC	1 cut(s)	334
AsuHPI	GGTGA	3 cut(s)	47, 73, 75
AsuNHI	GCTAGC	1 cut(s)	430
AvaI	CYCGRG	1 cut(s)	728
BaeGI	GKGCMC	1 cut(s)	989
BalI	TGGCCA	1 cut(s)	965
BanII	GRGCYC	1 cut(s)	459
BbsI	GAAGAC	1 cut(s)	674
Bbv12I	GWGCWC	2 cut(s)	459, 989
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	3 cut(s)	250, 883, 1027
BciT130I	CCWGG	1 cut(s)	843
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	868, 935
BfaI	CTAG	3 cut(s)	431, 854, 869
BfmI	CTRYAG	1 cut(s)	392
BfoI	RGCGCY	1 cut(s)	431
BfrI	CTTAAG	1 cut(s)	980
BisI	GCNGC	1 cut(s)	188
BlpI	GCTNAGC	1 cut(s)	972
BlsI	GCNGC	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	843
BmeT110I	CYCGRG	1 cut(s)	728
BmgT120I	GGNCC	1 cut(s)	334
BmrFI	CCNGG	1 cut(s)	843
BmrI	ACTGGG	1 cut(s)	1032
BmsI	GCATC	1 cut(s)	604
BmtI	GCTAGC	1 cut(s)	434
BmuI	ACTGGG	1 cut(s)	1032
BpiI	GAAGAC	1 cut(s)	674
Bpu1102I	GCTNAGC	1 cut(s)	972
BpuEI	CTTGAG	1 cut(s)	500
BsaHI	GRCGYC	1 cut(s)	605
BsaJI	CCNNGG	3 cut(s)	423, 729, 966
BsaWI	WCCGGW	1 cut(s)	661
BsaXI	ACNNNNNCTCC	7 cut(s)	34, 823, 853, 876, 906, 912, 942
Bsc4I	CCNNNNNNNGG	1 cut(s)	633
Bse118I	RCCGGY	1 cut(s)	601
Bse1I	ACTGG	1 cut(s)	1038
BseBI	CCWGG	1 cut(s)	843
BseDI	CCNNGG	3 cut(s)	423, 729, 966
BseGI	GGATG	2 cut(s)	595, 627
BseLI	CCNNNNNNNGG	1 cut(s)	633
BseMII	CTCAG	3 cut(s)	735, 834, 986
BseNI	ACTGG	1 cut(s)	1038
BseRI	GAGGAG	3 cut(s)	28, 242, 746
BseSI	GKGCMC	1 cut(s)	989
BseXI	GCAGC	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	878
BshFI	GGCC	4 cut(s)	41, 77, 335, 965
BsiHKAI	GWGCWC	2 cut(s)	459, 989
BsiHKCI	CYCGRG	1 cut(s)	728
BsiSI	CCGG	3 cut(s)	602, 662, 825
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	1 cut(s)	633
BsmAI	GTCTC	2 cut(s)	868, 935
BsmFI	GGGAC	1 cut(s)	610
BsmI	GAATGC	1 cut(s)	294
BsnI	GGCC	4 cut(s)	41, 77, 335, 965
BsoBI	CYCGRG	1 cut(s)	728
Bsp1286I	GDGCHC	2 cut(s)	459, 989
Bsp1720I	GCTNAGC	1 cut(s)	972
Bsp19I	CCATGG	1 cut(s)	966
Bsp68I	TCGCGA	1 cut(s)	878
BspACI	CCGC	2 cut(s)	452, 599
BspANI	GGCC	4 cut(s)	41, 77, 335, 965
BspCNI	CTCAG	3 cut(s)	736, 833, 985
BspFNI	CGCG	1 cut(s)	878
BspOI	GCTAGC	1 cut(s)	434
BspPI	GGATC	5 cut(s)	143, 240, 701, 719, 853
BspTI	CTTAAG	1 cut(s)	980
BsrFI	RCCGGY	1 cut(s)	601
BsrI	ACTGG	1 cut(s)	1038
BssAI	RCCGGY	1 cut(s)	601
BssECI	CCNNGG	3 cut(s)	423, 729, 966
BssNI	GRCGYC	1 cut(s)	605
BssT1I	CCWWGG	1 cut(s)	966
Bst2UI	CCWGG	1 cut(s)	843
Bst4CI	ACNGT	5 cut(s)	35, 144, 383, 441, 897
Bst6I	CTCTTC	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	605
BstAFI	CTTAAG	1 cut(s)	980
BstC8I	GCNNGC	4 cut(s)	75, 412, 432, 603
BstDEI	CTNAG	4 cut(s)	587, 744, 820, 972
BstDSI	CCRYGG	1 cut(s)	966
BstF5I	GGATG	2 cut(s)	595, 627
BstFNI	CGCG	1 cut(s)	878
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	430
BstMAI	GTCTC	2 cut(s)	868, 935
BstMWI	GCNNNNNNNGC	1 cut(s)	592
BstNI	CCWGG	1 cut(s)	843
BstSCI	CCNGG	1 cut(s)	841
BstSFI	CTRYAG	1 cut(s)	392
BstSLI	GKGCMC	1 cut(s)	989
BstUI	CGCG	1 cut(s)	878
BstV1I	GCAGC	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	674
BstX2I	RGATCY	3 cut(s)	135, 706, 724
BstYI	RGATCY	3 cut(s)	135, 706, 724
BsuRI	GGCC	4 cut(s)	41, 77, 335, 965
BtgI	CCRYGG	1 cut(s)	966
BtsCI	GGATG	2 cut(s)	595, 627
BtsIMutI	CAGTG	4 cut(s)	140, 414, 446, 902
BtuMI	TCGCGA	1 cut(s)	878
Cac8I	GCNNGC	4 cut(s)	75, 412, 432, 603
CaiI	CAGNNNCTG	1 cut(s)	416
CfoI	GCGC	1 cut(s)	430
Cfr10I	RCCGGY	1 cut(s)	601
Cfr13I	GGNCC	1 cut(s)	334
CseI	GACGC	1 cut(s)	594
Csp6I	GTAC	1 cut(s)	893
CviAII	CATG	4 cut(s)	7, 253, 934, 967
CviQI	GTAC	1 cut(s)	893
DdeI	CTNAG	4 cut(s)	587, 744, 820, 972
DraI	TTTAAA	1 cut(s)	739
EaeI	YGGCCR	1 cut(s)	963
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
EciI	GGCGGA	2 cut(s)	467, 588
Ecl136II	GAGCTC	1 cut(s)	457
Eco130I	CCWWGG	1 cut(s)	966
Eco24I	GRGCYC	1 cut(s)	459
Eco53kI	GAGCTC	1 cut(s)	457
Eco88I	CYCGRG	1 cut(s)	728
EcoICRI	GAGCTC	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	841
EcoT14I	CCWWGG	1 cut(s)	966
EcoT38I	GRGCYC	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	966
FaeI	CATG	4 cut(s)	10, 256, 937, 970
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	4 cut(s)	6, 252, 933, 966
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	1027
Fnu4HI	GCNGC	1 cut(s)	188
FokI	GGATG	2 cut(s)	582, 634
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	1 cut(s)	188
FspBI	CTAG	3 cut(s)	431, 854, 869
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	1 cut(s)	188
HaeII	RGCGCY	1 cut(s)	431
HaeIII	GGCC	4 cut(s)	41, 77, 335, 965
HapII	CCGG	3 cut(s)	602, 662, 825
HgaI	GACGC	1 cut(s)	594
HhaI	GCGC	1 cut(s)	430
Hin1I	GRCGYC	1 cut(s)	605
Hin1II	CATG	4 cut(s)	10, 256, 937, 970
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	6 cut(s)	48, 68, 503, 850, 873, 912
HpaII	CCGG	3 cut(s)	602, 662, 825
HphI	GGTGA	3 cut(s)	47, 73, 75
Hpy166II	GTNNAC	6 cut(s)	301, 444, 641, 931, 987, 1028
Hpy188I	TCNGA	5 cut(s)	25, 53, 348, 647, 772
Hpy188III	TCNNGA	7 cut(s)	148, 479, 533, 728, 765, 877, 1044
Hpy8I	GTNNAC	6 cut(s)	301, 444, 641, 931, 987, 1028
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	3 cut(s)	145, 575, 822
HpyCH4III	ACNGT	5 cut(s)	35, 144, 383, 441, 897
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	5 cut(s)	292, 410, 565, 595, 987
HpyF10VI	GCNNNNNNNGC	1 cut(s)	592
HpyF3I	CTNAG	4 cut(s)	587, 744, 820, 972
HpySE526I	ACGT	1 cut(s)	297
Hsp92I	GRCGYC	1 cut(s)	605
Hsp92II	CATG	4 cut(s)	10, 256, 937, 970
HspAI	GCGC	1 cut(s)	428
KroI	GCCGGC	1 cut(s)	601
KroNI	GCCGGC	1 cut(s)	603
Ksp22I	TGATCA	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	454
Lsp1109I	GCAGC	1 cut(s)	174
LweI	GCATC	1 cut(s)	604
MaeI	CTAG	3 cut(s)	431, 854, 869
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	81
MboII	GAAGA	6 cut(s)	85, 227, 506, 679, 734, 753
MflI	RGATCY	3 cut(s)	135, 706, 724
MhlI	GDGCHC	2 cut(s)	459, 989
MlsI	TGGCCA	1 cut(s)	965
MluCI	AATT	2 cut(s)	528, 712
MluNI	TGGCCA	1 cut(s)	965
MlyI	GAGTC	2 cut(s)	57, 77
MmeI	TCCRAC	1 cut(s)	249
Mox20I	TGGCCA	1 cut(s)	965
MreI	CGCCGGCG	1 cut(s)	601
MroNI	GCCGGC	1 cut(s)	601
MroXI	GAANNNNTTC	2 cut(s)	92, 198
MscI	TGGCCA	1 cut(s)	965
MseI	TTAA	7 cut(s)	123, 312, 462, 527, 684, 738, 981
MslI	CAYNNNNRTG	1 cut(s)	982
Msp20I	TGGCCA	1 cut(s)	965
MspCI	CTTAAG	1 cut(s)	980
MspI	CCGG	3 cut(s)	602, 662, 825
MspR9I	CCNGG	1 cut(s)	843
MssI	GTTTAAAC	1 cut(s)	739
Mva1269I	GAATGC	1 cut(s)	294
MvaI	CCWGG	1 cut(s)	843
MvnI	CGCG	1 cut(s)	878
MwoI	GCNNNNNNNGC	1 cut(s)	592
NaeI	GCCGGC	1 cut(s)	603
NcoI	CCATGG	1 cut(s)	966
NgoMIV	GCCGGC	1 cut(s)	601
NheI	GCTAGC	1 cut(s)	430
NlaIII	CATG	4 cut(s)	10, 256, 937, 970
NmeAIII	GCCGAG	2 cut(s)	67, 404
NmuCI	GTSAC	1 cut(s)	81
NruI	TCGCGA	1 cut(s)	878
OliI	CACNNNNGTG	1 cut(s)	982
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PctI	GAATGC	1 cut(s)	294
PdiI	GCCGGC	1 cut(s)	603
PdmI	GAANNNNTTC	2 cut(s)	92, 198
PfeI	GAWTC	4 cut(s)	503, 850, 873, 912
PfoI	TCCNGGA	1 cut(s)	841
PkrI	GCNGC	1 cut(s)	189
PleI	GAGTC	2 cut(s)	56, 76
PmeI	GTTTAAAC	1 cut(s)	739
PpsI	GAGTC	2 cut(s)	56, 76
PshBI	ATTAAT	1 cut(s)	462
PsiI	TTATAA	2 cut(s)	240, 755
Psp124BI	GAGCTC	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	841
PspGI	CCWGG	1 cut(s)	841
PspPI	GGNCC	1 cut(s)	334
PstNI	CAGNNNCTG	1 cut(s)	416
PsuI	RGATCY	3 cut(s)	135, 706, 724
RruI	TCGCGA	1 cut(s)	878
RsaI	GTAC	1 cut(s)	894
RsaNI	GTAC	1 cut(s)	893
RseI	CAYNNNNRTG	1 cut(s)	982
SacI	GAGCTC	1 cut(s)	459
SaqAI	TTAA	7 cut(s)	123, 312, 462, 527, 684, 738, 981
SatI	GCNGC	1 cut(s)	188
Sau96I	GGNCC	1 cut(s)	334
SchI	GAGTC	2 cut(s)	57, 77
ScrFI	CCNGG	1 cut(s)	843
SduI	GDGCHC	2 cut(s)	459, 989
SfaNI	GCATC	1 cut(s)	604
SfcI	CTRYAG	1 cut(s)	392
SgrAI	CRCCGGYG	1 cut(s)	601
SmiMI	CAYNNNNRTG	1 cut(s)	982
SmlI	CTYRAG	2 cut(s)	479, 980
SmoI	CTYRAG	2 cut(s)	479, 980
Sse9I	AATT	2 cut(s)	528, 712
SsiI	CCGC	2 cut(s)	452, 599
SspMI	CTAG	3 cut(s)	431, 854, 869
SstI	GAGCTC	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	841
StyI	CCWWGG	1 cut(s)	966
TaaI	ACNGT	5 cut(s)	35, 144, 383, 441, 897
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	4 cut(s)	66, 180, 501, 848
TasI	AATT	2 cut(s)	528, 712
TfiI	GAWTC	4 cut(s)	503, 850, 873, 912
Tru1I	TTAA	7 cut(s)	123, 312, 462, 527, 684, 738, 981
Tru9I	TTAA	7 cut(s)	123, 312, 462, 527, 684, 738, 981
TscAI	CASTG	4 cut(s)	147, 421, 446, 902
TseFI	GTSAC	1 cut(s)	81
TseI	GCWGC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	81
TspRI	CASTG	4 cut(s)	147, 421, 446, 902
Vha464I	CTTAAG	1 cut(s)	980
VneI	GTGCAC	1 cut(s)	985
VspI	ATTAAT	1 cut(s)	462
XmiI	GTMKAC	1 cut(s)	1027
XmnI	GAANNNNTTC	2 cut(s)	92, 198
XspI	CTAG	3 cut(s)	431, 854, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.