AT3G20130

cytochrome P450

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
7026808 .. 7028916
2109 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G20130.1

Sequence Viewer

Length: 1548 bp
ATGGAGGCAGTGATCAGCTTTGACTTTCAGAACTGCTTCATCTTCATCCTCATATTTCTCTTAACGTTCCTATGCTTCTTTTTCTTCTTCAAGAAACCAAAGGATTCACGAGTTAACTTCGATTTGCCTCCGAGCCCTCCTTCTCTACCAATCATTGGTCATGTTCACCTTCTCCTCTCTACTCTAACCCACAAGTCATTACAGAAACTCTCCTCCAGGTATGGACCTCTCCTCTATCTCCGGATTTTTAATGTCCCCATCATCCTCGTTTCCTCGGCCTCAGTGGCCTACGAGATCTTCAGGACACAAGACGTGAACATCTCCTCTCGCGGTGTCACCGCGGTTGATGAGTCCCTCGTGTTTGGATCTTCCAGTTTCGTCACTGCTCCTTACGGAGATTACTGGAAGTTCATGAAGAAGCTTACTGTCATGAAGCTTCTCGGACCGCAGGCACAAGAGCAGTCACGAGACATCCGTGCAGATGACATAAAGCGGTTTTGCAGGAATCTGCTCGATAAAGCAAGGAAGAAGGAGAGCGTTGAGATTGGTAAAGAAGCAATGAATCTCATGAACAACATTTTGTGCAAGATGAGCATGGGAAGGAGTTTTTCAGAGGAGAATGGTGAGACAGAGAAACTAAGGGGATTAGTTACCGAGTCGATTGGCTTGATGAAAAAGATGTTCTTGGCAGTTTTGTTGCGCAGACAGCTTCAGAAACTTGGAATCTCACTATTCAAGAAGGATATCATGGGCGTTTCCAACAAATTTGATGTGCTGCTAGAGAAAGTTCTTGTGGAACATAGAGAGAAACCGGAGAAGGATCAAGGTACGGTTATGTTGGACGTGTTGTTGGCAGCTTATGGAGACGAAAATGCAGAGTACAAGATCACTAAGAATCACATCAAGGCTTTTTTCGTGGACCTTTTCATTGGAGCCACTGATACCTCTGTGCAAACAATACAGTGGACAATGGCCGAGATCATGAACAATACTCACATTCTTGAGAGAATGAGAGAAGAAATTGATTCTGTCGTAGGGAAATCAAGGTTGATTCAAGAAACGGATTTACCGAACCTCCCTTACTTGCACGCTGTCATTAAGGAAGCACTAAGACTGCACCCACCGGGGCCTCTCTTGCCAAGGGAATTTCAACAAGGGTGTAAGATCGGAGGGTTCTACATACCGGAGAAGACAACACTTTTGATTAATGCCTATGTTGTGATGAGAGATCCGAATGTCTGGGAAGACCCTGAGGAGTTTAAACCAGAGAGATTTCTAGCTTCTTCAAGGTCAGGGCAAGAGGACGAGAGAAGAGAGCAAGCTCTTAAGTTTCTTCCTTTCGGCAGTGGAAGGAGAGGATGTCCTGGATCAAATCTAGCTTATATGATTGTAGGAAGTGCAATAGGAATGATGGTGCAGTGCTTTGACTGGAGAATCGAAGGAGAGAAGGTCAACATGAAAGAGGCTGTTAAAGGGACCATCCTTACCATGGCTCATCCTCTTAAGTTAACTCCTGTCACTCGACAACCACCCTTGACTTGGATATGA

Protein Analysis

515

Amino Acids

58.71

Weight (kDa)

8.92

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 43 - 503 6.3e-93 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 701
AccB7I CCANNNNNTGG 1 cut(s) 155
AccII CGCG 2 cut(s) 330, 341
AccIII TCCGGA 1 cut(s) 240
AciI CCGC 5 cut(s) 330, 339, 341, 446, 493
AclI AACGTT 1 cut(s) 65
AclWI GGATC 4 cut(s) 373, 828, 1223, 1375
AcoI YGGCCR 1 cut(s) 972
AcsI RAATTY 2 cut(s) 764, 1145
AcuI CTGAAG 2 cut(s) 283, 695
AfaI GTAC 2 cut(s) 829, 881
AfiI CCNNNNNNNGG 3 cut(s) 155, 1489, 1539
AflII CTTAAG 2 cut(s) 1325, 1502
AflIII ACRYGT 1 cut(s) 843
AgsI TTSAA 5 cut(s) 91, 736, 1055, 1151, 1287
AjiI CACGTC 2 cut(s) 313, 844
AjnI CCWGG 2 cut(s) 215, 1363
AluBI AGCT 8 cut(s) 18, 421, 436, 709, 857, 1280, 1322, 1379
AluI AGCT 8 cut(s) 18, 421, 436, 709, 857, 1280, 1322, 1379
Alw26I GTCTC 3 cut(s) 462, 620, 858
AlwI GGATC 4 cut(s) 373, 828, 1223, 1375
Aor13HI TCCGGA 1 cut(s) 240
AoxI GGCC 4 cut(s) 276, 285, 972, 1127
ApeKI GCWGC 2 cut(s) 775, 854
ApoI RAATTY 2 cut(s) 764, 1145
ArsI GACNNNNNNTTYG 2 cut(s) 1183, 1215
AseI ATTAAT 1 cut(s) 1206
Asp700I GAANNNNTTC 1 cut(s) 35
AspLEI GCGC 1 cut(s) 702
AspS9I GGNCC 5 cut(s) 224, 443, 919, 1127, 1476
AsuC2I CCSGG 1 cut(s) 1125
AsuHPI GGTGA 3 cut(s) 158, 328, 635
AvaII GGWCC 4 cut(s) 224, 443, 919, 1476
AxyI CCTNAGG 1 cut(s) 1251
BaeI ACNNNNGTAYC 2 cut(s) 933, 966
BanII GRGCYC 1 cut(s) 137
BauI CACGAG 3 cut(s) 108, 356, 465
BbsI GAAGAC 2 cut(s) 1196, 1251
BbvI GCAGC 2 cut(s) 762, 866
BccI CCATC 3 cut(s) 266, 1405, 1487
BciT130I CCWGG 2 cut(s) 217, 1365
BclI TGATCA 1 cut(s) 12
BcnI CCSGG 1 cut(s) 1125
BcoDI GTCTC 3 cut(s) 462, 620, 858
BfaI CTAG 3 cut(s) 779, 1277, 1376
BfrI CTTAAG 2 cut(s) 1325, 1502
BglI GCCNNNNNGGC 1 cut(s) 284
BglII AGATCT 1 cut(s) 294
BisI GCNGC 2 cut(s) 776, 855
BlsI GCNGC 2 cut(s) 777, 856
Bme1390I CCNGG 3 cut(s) 217, 1125, 1365
Bme18I GGWCC 4 cut(s) 224, 443, 919, 1476
BmgBI CACGTC 2 cut(s) 313, 844
BmgT120I GGNCC 5 cut(s) 224, 443, 919, 1127, 1476
BmiI GGNNCC 3 cut(s) 934, 1128, 1477
BmrFI CCNGG 3 cut(s) 217, 1125, 1365
BpiI GAAGAC 2 cut(s) 1196, 1251
BpmI CTGGAG 2 cut(s) 199, 1450
BpuEI CTTGAG 1 cut(s) 1022
BpuMI CCSGG 1 cut(s) 1125
BsaJI CCNNGG 5 cut(s) 273, 339, 1124, 1139, 1488
BsaWI WCCGGW 3 cut(s) 240, 811, 1183
BsaXI ACNNNNNCTCC 6 cut(s) 1059, 1089, 1345, 1375, 1434, 1464
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 1489, 1539
Bse1I ACTGG 3 cut(s) 372, 407, 1433
Bse21I CCTNAGG 1 cut(s) 1251
Bse3DI GCAATG 1 cut(s) 564
BseAI TCCGGA 1 cut(s) 240
BseBI CCWGG 2 cut(s) 217, 1365
BseDI CCNNGG 5 cut(s) 273, 339, 1124, 1139, 1488
BseGI GGATG 6 cut(s) 45, 261, 471, 1364, 1479, 1495
BseLI CCNNNNNNNGG 3 cut(s) 155, 1489, 1539
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 2 cut(s) 294, 1242
BseNI ACTGG 3 cut(s) 372, 407, 1433
BseRI GAGGAG 6 cut(s) 164, 202, 221, 313, 629, 1268
BseXI GCAGC 2 cut(s) 762, 866
BsgI GTGCAG 3 cut(s) 498, 1100, 1436
Bsh1236I CGCG 2 cut(s) 330, 341
BshFI GGCC 4 cut(s) 278, 287, 974, 1129
BsiSI CCGG 4 cut(s) 241, 812, 1124, 1184
BslFI GGGAC 3 cut(s) 239, 337, 1489
BslI CCNNNNNNNGG 3 cut(s) 155, 1489, 1539
BsmAI GTCTC 3 cut(s) 462, 620, 858
BsmBI CGTCTC 1 cut(s) 858
BsmFI GGGAC 3 cut(s) 239, 337, 1489
BsnI GGCC 4 cut(s) 278, 287, 974, 1129
Bsp1286I GDGCHC 1 cut(s) 137
Bsp13I TCCGGA 1 cut(s) 240
Bsp143I GATC 9 cut(s) 12, 294, 365, 820, 885, 978, 1164, 1228, 1367
Bsp19I CCATGG 1 cut(s) 1488
BspACI CCGC 5 cut(s) 330, 339, 341, 446, 493
BspANI GGCC 4 cut(s) 278, 287, 974, 1129
BspCNI CTCAG 2 cut(s) 293, 1243
BspEI TCCGGA 1 cut(s) 240
BspFNI CGCG 2 cut(s) 330, 341
BspHI TCATGA 4 cut(s) 411, 429, 567, 981
BspLI GGNNCC 3 cut(s) 934, 1128, 1477
BspPI GGATC 4 cut(s) 373, 828, 1223, 1375
BspTI CTTAAG 2 cut(s) 1325, 1502
BsrDI GCAATG 1 cut(s) 564
BsrI ACTGG 3 cut(s) 372, 407, 1433
BssECI CCNNGG 5 cut(s) 273, 339, 1124, 1139, 1488
BssMI GATC 9 cut(s) 12, 294, 365, 820, 885, 978, 1164, 1228, 1367
BssSI CACGAG 3 cut(s) 108, 356, 465
BssT1I CCWWGG 2 cut(s) 1139, 1488
Bst2BI CACGAG 3 cut(s) 108, 356, 465
Bst2UI CCWGG 2 cut(s) 217, 1365
Bst4CI ACNGT 3 cut(s) 427, 832, 963
Bst6I CTCTTC 1 cut(s) 1306
BstAFI CTTAAG 2 cut(s) 1325, 1502
BstC8I GCNNGC 3 cut(s) 450, 1089, 1320
BstDEI CTNAG 5 cut(s) 280, 638, 891, 1109, 1251
BstDSI CCRYGG 2 cut(s) 339, 1488
BstF5I GGATG 6 cut(s) 45, 261, 471, 1364, 1479, 1495
BstFNI CGCG 2 cut(s) 330, 341
BstHHI GCGC 1 cut(s) 702
BstKTI GATC 9 cut(s) 15, 297, 368, 823, 888, 981, 1167, 1231, 1370
BstMAI GTCTC 3 cut(s) 462, 620, 858
BstMBI GATC 9 cut(s) 12, 294, 365, 820, 885, 978, 1164, 1228, 1367
BstMWI GCNNNNNNNGC 4 cut(s) 284, 591, 706, 1135
BstNI CCWGG 2 cut(s) 217, 1365
BstSCI CCNGG 3 cut(s) 215, 1123, 1363
BstUI CGCG 2 cut(s) 330, 341
BstV1I GCAGC 2 cut(s) 762, 866
BstV2I GAAGAC 2 cut(s) 1196, 1251
BstX2I RGATCY 3 cut(s) 294, 365, 1228
BstYI RGATCY 3 cut(s) 294, 365, 1228
Bsu36I CCTNAGG 1 cut(s) 1251
BsuRI GGCC 4 cut(s) 278, 287, 974, 1129
BtgI CCRYGG 2 cut(s) 339, 1488
BtrI CACGTC 2 cut(s) 313, 844
BtsCI GGATG 6 cut(s) 45, 261, 471, 1364, 1479, 1495
BtsI GCAGTG 4 cut(s) 15, 381, 1351, 1424
BtsIMutI CAGTG 7 cut(s) 15, 288, 381, 936, 968, 1351, 1424
Cac8I GCNNGC 3 cut(s) 450, 1089, 1320
CciI TCATGA 4 cut(s) 411, 429, 567, 981
CfoI GCGC 1 cut(s) 702
Cfr13I GGNCC 5 cut(s) 224, 443, 919, 1127, 1476
Cfr42I CCGCGG 1 cut(s) 342
CpoI CGGWCCG 1 cut(s) 443
Csp6I GTAC 2 cut(s) 828, 880
CspI CGGWCCG 1 cut(s) 443
CviAII CATG 9 cut(s) 161, 412, 430, 568, 595, 748, 982, 1456, 1489
CviQI GTAC 2 cut(s) 828, 880
DdeI CTNAG 5 cut(s) 280, 638, 891, 1109, 1251
DpnI GATC 9 cut(s) 14, 296, 367, 822, 887, 980, 1166, 1230, 1369
DpnII GATC 9 cut(s) 12, 294, 365, 820, 885, 978, 1164, 1228, 1367
DraI TTTAAA 1 cut(s) 1261
EaeI YGGCCR 1 cut(s) 972
Eam1104I CTCTTC 1 cut(s) 1306
EarI CTCTTC 1 cut(s) 1306
Eco130I CCWWGG 2 cut(s) 1139, 1488
Eco24I GRGCYC 1 cut(s) 137
Eco32I GATATC 1 cut(s) 745
Eco47I GGWCC 4 cut(s) 224, 443, 919, 1476
Eco57I CTGAAG 2 cut(s) 283, 695
Eco81I CCTNAGG 1 cut(s) 1251
EcoO109I RGGNCCY 1 cut(s) 1127
EcoRII CCWGG 2 cut(s) 215, 1363
EcoRV GATATC 1 cut(s) 745
EcoT14I CCWWGG 2 cut(s) 1139, 1488
EcoT38I GRGCYC 1 cut(s) 137
ErhI CCWWGG 2 cut(s) 1139, 1488
Esp3I CGTCTC 1 cut(s) 858
FaeI CATG 9 cut(s) 164, 415, 433, 571, 598, 751, 985, 1459, 1492
FalI AAGNNNNNCTT 2 cut(s) 668, 700
FaqI GGGAC 3 cut(s) 239, 337, 1489
FatI CATG 9 cut(s) 160, 411, 429, 567, 594, 747, 981, 1455, 1488
FbaI TGATCA 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 776, 855
FokI GGATG 6 cut(s) 32, 248, 458, 1371, 1466, 1482
FriOI GRGCYC 1 cut(s) 137
Fsp4HI GCNGC 2 cut(s) 776, 855
FspBI CTAG 3 cut(s) 779, 1277, 1376
FspI TGCGCA 1 cut(s) 701
GlaI GCGC 1 cut(s) 701
GluI GCNGC 2 cut(s) 776, 855
GsuI CTGGAG 2 cut(s) 199, 1450
HaeIII GGCC 4 cut(s) 278, 287, 974, 1129
HapII CCGG 4 cut(s) 241, 812, 1124, 1184
HhaI GCGC 1 cut(s) 702
Hin1II CATG 9 cut(s) 164, 415, 433, 571, 598, 751, 985, 1459, 1492
Hin6I GCGC 1 cut(s) 700
HinP1I GCGC 1 cut(s) 700
HincII GTYRAC 3 cut(s) 115, 1453, 1509
HindII GTYRAC 3 cut(s) 115, 1453, 1509
HindIII AAGCTT 2 cut(s) 419, 434
HpaI GTTAAC 2 cut(s) 115, 1509
HpaII CCGG 4 cut(s) 241, 812, 1124, 1184
HphI GGTGA 3 cut(s) 158, 328, 635
Hpy166II GTNNAC 7 cut(s) 115, 166, 316, 919, 966, 1453, 1509
Hpy188I TCNGA 7 cut(s) 30, 132, 443, 613, 714, 1169, 1233
Hpy8I GTNNAC 7 cut(s) 115, 166, 316, 919, 966, 1453, 1509
HpyAV CCTTC 9 cut(s) 150, 179, 523, 594, 733, 811, 1344, 1433, 1441
HpyCH4III ACNGT 3 cut(s) 427, 832, 963
HpyCH4IV ACGT 3 cut(s) 65, 312, 843
HpyCH4V TGCA 9 cut(s) 479, 501, 585, 875, 952, 1087, 1117, 1400, 1417
HpyF10VI GCNNNNNNNGC 4 cut(s) 284, 591, 706, 1135
HpyF3I CTNAG 5 cut(s) 280, 638, 891, 1109, 1251
HpySE526I ACGT 3 cut(s) 65, 312, 843
Hsp92II CATG 9 cut(s) 164, 415, 433, 571, 598, 751, 985, 1459, 1492
HspAI GCGC 1 cut(s) 700
Kpn2I TCCGGA 1 cut(s) 240
Ksp22I TGATCA 1 cut(s) 12
KspAI GTTAAC 2 cut(s) 115, 1509
KspI CCGCGG 1 cut(s) 342
Kzo9I GATC 9 cut(s) 12, 294, 365, 820, 885, 978, 1164, 1228, 1367
LmnI GCTCC 2 cut(s) 391, 932
Lsp1109I GCAGC 2 cut(s) 762, 866
MaeI CTAG 3 cut(s) 779, 1277, 1376
MaeII ACGT 3 cut(s) 65, 312, 843
MaeIII GTNAC 5 cut(s) 334, 379, 462, 649, 1516
MalI GATC 9 cut(s) 14, 296, 367, 822, 887, 980, 1166, 1230, 1369
MboI GATC 9 cut(s) 12, 294, 365, 820, 885, 978, 1164, 1228, 1367
MflI RGATCY 3 cut(s) 294, 365, 1228
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 3 cut(s) 764, 1020, 1145
MlyI GAGTC 2 cut(s) 359, 665
MmeI TCCRAC 2 cut(s) 783, 819
MroI TCCGGA 1 cut(s) 240
MroXI GAANNNNTTC 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 341
MspCI CTTAAG 2 cut(s) 1325, 1502
MspI CCGG 4 cut(s) 241, 812, 1124, 1184
MspR9I CCNGG 3 cut(s) 217, 1125, 1365
MssI GTTTAAAC 1 cut(s) 1261
MvaI CCWGG 2 cut(s) 217, 1365
MvnI CGCG 2 cut(s) 330, 341
MwoI GCNNNNNNNGC 4 cut(s) 284, 591, 706, 1135
NciI CCSGG 1 cut(s) 1125
NcoI CCATGG 1 cut(s) 1488
NdeII GATC 9 cut(s) 12, 294, 365, 820, 885, 978, 1164, 1228, 1367
NlaIII CATG 9 cut(s) 164, 415, 433, 571, 598, 751, 985, 1459, 1492
NlaIV GGNNCC 3 cut(s) 934, 1128, 1477
NmeAIII GCCGAG 2 cut(s) 254, 1000
NmuCI GTSAC 4 cut(s) 334, 379, 462, 1516
NsbI TGCGCA 1 cut(s) 701
PagI TCATGA 4 cut(s) 411, 429, 567, 981
PcsI WCGNNNNNNNCGW 2 cut(s) 472, 1067
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 8 cut(s) 104, 505, 562, 723, 895, 1025, 1051, 1434
PflMI CCANNNNNTGG 1 cut(s) 155
PfoI TCCNGGA 1 cut(s) 1363
PkrI GCNGC 2 cut(s) 777, 856
PleI GAGTC 2 cut(s) 358, 664
PmeI GTTTAAAC 1 cut(s) 1261
PpsI GAGTC 2 cut(s) 358, 664
PshBI ATTAAT 1 cut(s) 1206
Psp1406I AACGTT 1 cut(s) 65
Psp6I CCWGG 2 cut(s) 215, 1363
PspGI CCWGG 2 cut(s) 215, 1363
PspN4I GGNNCC 3 cut(s) 934, 1128, 1477
PspPI GGNCC 5 cut(s) 224, 443, 919, 1127, 1476
PsrI GAACNNNNNNTAC 2 cut(s) 1064, 1096
PsuI RGATCY 3 cut(s) 294, 365, 1228
RsaI GTAC 2 cut(s) 829, 881
RsaNI GTAC 2 cut(s) 828, 880
Rsr2I CGGWCCG 1 cut(s) 443
RsrII CGGWCCG 1 cut(s) 443
SacII CCGCGG 1 cut(s) 342
SatI GCNGC 2 cut(s) 776, 855
Sau3AI GATC 9 cut(s) 12, 294, 365, 820, 885, 978, 1164, 1228, 1367
Sau96I GGNCC 5 cut(s) 224, 443, 919, 1127, 1476
SchI GAGTC 2 cut(s) 359, 665
ScrFI CCNGG 3 cut(s) 217, 1125, 1365
SduI GDGCHC 1 cut(s) 137
SfiI GGCCNNNNNGGCC 1 cut(s) 284
Sfr303I CCGCGG 1 cut(s) 342
SgrBI CCGCGG 1 cut(s) 342
SinI GGWCC 4 cut(s) 224, 443, 919, 1476
SmlI CTYRAG 3 cut(s) 1001, 1325, 1502
SmoI CTYRAG 3 cut(s) 1001, 1325, 1502
Sse9I AATT 3 cut(s) 764, 1020, 1145
SsiI CCGC 5 cut(s) 330, 339, 341, 446, 493
SspMI CTAG 3 cut(s) 779, 1277, 1376
StyD4I CCNGG 3 cut(s) 215, 1123, 1363
StyI CCWWGG 2 cut(s) 1139, 1488
TaaI ACNGT 3 cut(s) 427, 832, 963
TaiI ACGT 3 cut(s) 68, 315, 846
TaqI TCGA 5 cut(s) 120, 513, 659, 1437, 1522
TasI AATT 3 cut(s) 764, 1020, 1145
TatI WGTACW 1 cut(s) 879
TfiI GAWTC 8 cut(s) 104, 505, 562, 723, 895, 1025, 1051, 1434
TscAI CASTG 7 cut(s) 15, 288, 388, 943, 968, 1351, 1424
TseFI GTSAC 4 cut(s) 334, 379, 462, 1516
TseI GCWGC 2 cut(s) 775, 854
Tsp45I GTSAC 4 cut(s) 334, 379, 462, 1516
TspGWI ACGGA 3 cut(s) 408, 464, 1076
TspRI CASTG 7 cut(s) 15, 288, 388, 943, 968, 1351, 1424
Van91I CCANNNNNTGG 1 cut(s) 155
Vha464I CTTAAG 2 cut(s) 1325, 1502
VpaK11BI GGWCC 4 cut(s) 224, 443, 919, 1476
VspI ATTAAT 1 cut(s) 1206
XapI RAATTY 2 cut(s) 764, 1145
XcmI CCANNNNNNNNNTGG 2 cut(s) 1486, 1536
XmnI GAANNNNTTC 1 cut(s) 35
XspI CTAG 3 cut(s) 779, 1277, 1376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.