Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000895

Physical Location & Seq

Genomic Coordinates Forward (+)

7023293 .. 7025982

Gene Structure 2690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGAAGAAGCTCCTGGTTACTAAGCTGCTTGGACCACAGGCACTTGAGCGGTCAAGAGGCATCCGTGCAGATGAGCTTGAGCGGTTTCACTCAAGCCTGCTTGATAAGGCGGTAAAGAAGGAGATCGTTGAGATTGGGAAGGAAGCAACGAAGCTTAGTAATAACAGCCTCTGGAGGATGAGCATTGGGAGAAGTTTTTCAGAGAAGAATGGTGAGGCTGAGAGAGTCAGGGGACTGGTTACTGAGTTAGATGGCTTGACAAAGAAGGTCTTGTTTGCAACTTTGCTGCACAGGCCCCTTGAGAAGCTTGGAATCTCTCTGTTCAAAAAGGAGATCATGTGTGTTTCTGACAGCTTCGATGAGGTCCTTGAGAGGGTTCTTGTGGAACATGAACAGAAACTGGACGATCATCAAGATAGGGACATGATGGACGTGTTGTTGGCAGCTTATGGAGATGAAAACGCAGAGCATAAAATCAGCAGGAACCACATCAAAGCATTTTTCGTGGAGCTTTTCTTTGCGGGTACTGATACCTCGGCGCAATCAATACAGTGGACAATGGCAGAGATCATTAACAACCCCAACATTCTTAAAAGATTGAGAGAAGAAATCGATTCTGTGGTAGGGAAAACAAGGTTGATTCAAGAAACTGATCTACCAAAGCTCCCCTATTTGCAAGCTGTGGTTAAGGAAGGACTTAGATTGCACCCGCCATTGCCTCTCTTTGTAAGGACGTTCCAAGAAGGGTGTAAGATTGGAGGTTTCTATGTACCAGAAAAGACAACACTTATTGGTAATGCTTATGTTATGATGAGAGATCCGAGTGTCTGGGAAGACCCTGAGGAGTTTAAACCTGAGAGGTTTCTATCTTCTTCAAGATCAACGCAAGAAGAGGAAAGAAGAGAGCAAGCACTTAAGTACATTCCTTTCGGTAGTGGACGGAGAGGCTGTCCTGGATCAAGTCTGGGTTATATCTTTGTTGGCACCGCAGTTGGAATGATGGTGCAATGCTTTGACTGGAGTATCAAAGGAGACAAGGTCCAAATGGATGAGGCTGGAGGACTAAACTTGAGTATGGCTCATTCCCTGAAGTGCACTCCTGTTCCTCGAAACCGGCCTTTACTTGCTGATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006629 GO:0006720 GO:0006721 GO:0006722 GO:0006950 GO:0006952 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009506 GO:0009605 GO:0009606 GO:0009607 GO:0009620 GO:0009628 GO:0009629 GO:0009630 GO:0009812 GO:0009958 GO:0009987 GO:0010683 GO:0012505 GO:0016020 GO:0016491 GO:0016627 GO:0016705 GO:0016709 GO:0019748 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042214 GO:0042440 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046246 GO:0048364 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051552 GO:0051554 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071704 GO:0080003 GO:0080004 GO:0098542 GO:0099402 GO:1901360 GO:1901576 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00140 ko00380 ko00590 ko00591 ko00830 ko00980 ko01100 ko04212 ko04726 ko04750 ko04913 ko05204 map00140 map00380 map00590 map00591 map00830 map00980 map01100 map04212 map04726 map04750 map04913 map05204

Pfam Domains

Protein Families

p450

Protein Analysis

378

Amino Acids

42.87

Weight (kDa)

6.74

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 352	2.7e-73	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28430 AT1G50520 AT1G50560 AT2G05180 AT2G14100 AT2G27000 AT2G27010 AT3G20080 AT3G20080 AT3G20080 AT3G20080 AT3G20080 AT3G20080 AT3G20090 AT3G20090 AT3G20100 AT3G20110 AT3G20120 AT3G20120 AT3G20120 AT3G20120 AT3G20130 AT3G20130 AT3G20140 AT3G20935 AT3G20940 AT3G20950 AT3G20960 AT3G20960 AT3G32047 AT4G15330 AT4G15330 AT4G15350 AT4G15360 AT4G15380 AT5G42580 AT5G47990
fragaria_vesca	FvH4_7g00640
malus_domestica	MD07G1006100.v1.1
prunus_persica	Prupe.2G008400_v2.0.a1 Prupe.2G008900_v2.0.a1 Prupe.4G287500_v2.0.a1
pyrus_communis	pycom07g00490
rosa_chinensis	RchiOBHm_Chr1g0314821 RchiOBHm_Chr1g0314871
rosa_laevigata	RLG00000030759 RLG00000030762
rosa_multiflora	Rmu_sc0002833.1_g000040 Rmu_sc0002833.1_g000046 Rmu_sc0010489.1_g000008 Rmu_sc0010489.1_g000015
rosa_roxburghii	Rroxscaffold_4G00331770 Rroxscaffold_4G00331860
rosa_rugosa	Rorug01G0002100 Rorug01G0002600
rosa_samantha	Rh1AG013000 Rh1AG013500 Rh1BG004600 Rh1BG005000 Rh1CG011500 Rh1CG011800 Rh1DG006300 Rh1DG006800
rosa_wichuraiana	Rw1G000560 Rw1G000610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	983
AccBSI	CCGCTC	2 cut(s)	49, 82
AciI	CCGC	6 cut(s)	49, 82, 110, 521, 710, 987
AclWI	GGATC	2 cut(s)	812, 964
AcuI	CTGAAG	1 cut(s)	1109
AfaI	GTAC	3 cut(s)	526, 771, 920
AfiI	CCNNNNNNNGG	1 cut(s)	373
AflII	CTTAAG	1 cut(s)	914
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	3 cut(s)	325, 644, 876
AjiI	CACGTC	1 cut(s)	433
AjnI	CCWGG	2 cut(s)	12, 952
Alw21I	GWGCWC	1 cut(s)	1097
Alw26I	GTCTC	1 cut(s)	1026
Alw44I	GTGCAC	1 cut(s)	1093
AlwI	GGATC	2 cut(s)	812, 964
AlwNI	CAGNNNCTG	2 cut(s)	171, 400
AoxI	GGCC	2 cut(s)	293, 1115
ApaLI	GTGCAC	1 cut(s)	1093
ApeKI	GCWGC	3 cut(s)	25, 286, 443
Asp700I	GAANNNNTTC	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	541
AspS9I	GGNCC	4 cut(s)	32, 294, 364, 1039
AsuHPI	GGTGA	1 cut(s)	224
AvaII	GGWCC	3 cut(s)	32, 364, 1039
AxyI	CCTNAGG	1 cut(s)	840
BaeGI	GKGCMC	1 cut(s)	1097
BaeI	ACNNNNGTAYC	2 cut(s)	1006, 1039
BanI	GGYRCC	1 cut(s)	983
BbsI	GAAGAC	1 cut(s)	840
Bbv12I	GWGCWC	1 cut(s)	1097
BbvI	GCAGC	3 cut(s)	12, 273, 455
BccI	CCATC	3 cut(s)	245, 421, 994
BciT130I	CCWGG	2 cut(s)	14, 954
BclI	TGATCA	1 cut(s)	1129
BcoDI	GTCTC	1 cut(s)	1026
BfrI	CTTAAG	1 cut(s)	914
BisI	GCNGC	3 cut(s)	26, 287, 444
BlsI	GCNGC	3 cut(s)	27, 288, 445
Bme1390I	CCNGG	2 cut(s)	14, 954
Bme18I	GGWCC	3 cut(s)	32, 364, 1039
BmgBI	CACGTC	1 cut(s)	433
BmgT120I	GGNCC	4 cut(s)	32, 294, 364, 1039
BmiI	GGNNCC	3 cut(s)	296, 485, 985
BmrFI	CCNGG	2 cut(s)	14, 954
BmsI	GCATC	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	840
BplI	GAGNNNNNCTC	2 cut(s)	1063, 1095
BpmI	CTGGAG	3 cut(s)	193, 1039, 1077
BpuEI	CTTGAG	6 cut(s)	65, 76, 98, 320, 389, 1090
Bsa29I	ATCGAT	1 cut(s)	612
BsaJI	CCNNGG	1 cut(s)	534
BsaXI	ACNNNNNCTCC	8 cut(s)	323, 353, 648, 678, 934, 964, 1023, 1053
Bsc4I	CCNNNNNNNGG	1 cut(s)	373
Bse118I	RCCGGY	1 cut(s)	1113
Bse1I	ACTGG	3 cut(s)	240, 405, 1022
Bse21I	CCTNAGG	1 cut(s)	840
Bse3DI	GCAATG	2 cut(s)	713, 1013
BseBI	CCWGG	2 cut(s)	14, 954
BseCI	ATCGAT	1 cut(s)	612
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	3 cut(s)	60, 183, 1054
BseLI	CCNNNNNNNGG	1 cut(s)	373
BseMI	GCAATG	2 cut(s)	713, 1013
BseMII	CTCAG	4 cut(s)	210, 234, 831, 846
BseNI	ACTGG	3 cut(s)	240, 405, 1022
BseRI	GAGGAG	1 cut(s)	857
BseSI	GKGCMC	1 cut(s)	1097
BseXI	GCAGC	3 cut(s)	12, 273, 455
BsgI	GTGCAG	2 cut(s)	87, 272
BshFI	GGCC	2 cut(s)	295, 1117
BshNI	GGYRCC	1 cut(s)	983
BshVI	ATCGAT	1 cut(s)	612
BsiHKAI	GWGCWC	1 cut(s)	1097
BsiSI	CCGG	1 cut(s)	1114
BslFI	GGGAC	2 cut(s)	246, 434
BslI	CCNNNNNNNGG	1 cut(s)	373
BsmAI	GTCTC	1 cut(s)	1026
BsmFI	GGGAC	2 cut(s)	246, 434
BsnI	GGCC	2 cut(s)	295, 1117
Bsp1286I	GDGCHC	1 cut(s)	1097
Bsp143I	GATC	9 cut(s)	123, 333, 406, 567, 652, 817, 878, 956, 1129
BspACI	CCGC	6 cut(s)	49, 82, 110, 521, 710, 987
BspANI	GGCC	2 cut(s)	295, 1117
BspCNI	CTCAG	4 cut(s)	211, 235, 832, 847
BspDI	ATCGAT	1 cut(s)	612
BspLI	GGNNCC	3 cut(s)	296, 485, 985
BspPI	GGATC	2 cut(s)	812, 964
BspT107I	GGYRCC	1 cut(s)	983
BspTI	CTTAAG	1 cut(s)	914
BsrBI	CCGCTC	2 cut(s)	49, 82
BsrDI	GCAATG	2 cut(s)	713, 1013
BsrFI	RCCGGY	1 cut(s)	1113
BsrI	ACTGG	3 cut(s)	240, 405, 1022
BssAI	RCCGGY	1 cut(s)	1113
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	9 cut(s)	123, 333, 406, 567, 652, 817, 878, 956, 1129
Bst2UI	CCWGG	2 cut(s)	14, 954
Bst4CI	ACNGT	1 cut(s)	552
Bst6I	CTCTTC	2 cut(s)	885, 895
BstAFI	CTTAAG	1 cut(s)	914
BstC8I	GCNNGC	3 cut(s)	98, 678, 909
BstDEI	CTNAG	7 cut(s)	21, 155, 219, 243, 698, 840, 855
BstF5I	GGATG	3 cut(s)	60, 183, 1054
BstHHI	GCGC	1 cut(s)	541
BstKTI	GATC	9 cut(s)	126, 336, 409, 570, 655, 820, 881, 959, 1132
BstMAI	GTCTC	1 cut(s)	1026
BstMBI	GATC	9 cut(s)	123, 333, 406, 567, 652, 817, 878, 956, 1129
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstNI	CCWGG	2 cut(s)	14, 954
BstSCI	CCNGG	2 cut(s)	12, 952
BstSLI	GKGCMC	1 cut(s)	1097
BstV1I	GCAGC	3 cut(s)	12, 273, 455
BstV2I	GAAGAC	1 cut(s)	840
BstX2I	RGATCY	1 cut(s)	817
BstYI	RGATCY	1 cut(s)	817
Bsu15I	ATCGAT	1 cut(s)	612
Bsu36I	CCTNAGG	1 cut(s)	840
BsuRI	GGCC	2 cut(s)	295, 1117
BsuTUI	ATCGAT	1 cut(s)	612
BtrI	CACGTC	1 cut(s)	433
BtsCI	GGATG	3 cut(s)	60, 183, 1054
BtsIMutI	CAGTG	1 cut(s)	557
Cac8I	GCNNGC	3 cut(s)	98, 678, 909
CaiI	CAGNNNCTG	2 cut(s)	171, 400
CfoI	GCGC	1 cut(s)	541
Cfr10I	RCCGGY	1 cut(s)	1113
Cfr13I	GGNCC	4 cut(s)	32, 294, 364, 1039
ClaI	ATCGAT	1 cut(s)	612
Csp6I	GTAC	3 cut(s)	525, 770, 919
CviAII	CATG	3 cut(s)	337, 389, 424
CviQI	GTAC	3 cut(s)	525, 770, 919
DdeI	CTNAG	7 cut(s)	21, 155, 219, 243, 698, 840, 855
DpnI	GATC	9 cut(s)	125, 335, 408, 569, 654, 819, 880, 958, 1131
DpnII	GATC	9 cut(s)	123, 333, 406, 567, 652, 817, 878, 956, 1129
DraI	TTTAAA	1 cut(s)	850
Eam1104I	CTCTTC	2 cut(s)	885, 895
EarI	CTCTTC	2 cut(s)	885, 895
Eco47I	GGWCC	3 cut(s)	32, 364, 1039
Eco57I	CTGAAG	1 cut(s)	1109
Eco81I	CCTNAGG	1 cut(s)	840
EcoO109I	RGGNCCY	2 cut(s)	294, 364
EcoRII	CCWGG	2 cut(s)	12, 952
FaeI	CATG	3 cut(s)	340, 392, 427
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FaqI	GGGAC	2 cut(s)	246, 434
FatI	CATG	3 cut(s)	336, 388, 423
FauI	CCCGC	2 cut(s)	514, 717
FbaI	TGATCA	1 cut(s)	1129
Fnu4HI	GCNGC	3 cut(s)	26, 287, 444
FokI	GGATG	3 cut(s)	47, 190, 1061
Fsp4HI	GCNGC	3 cut(s)	26, 287, 444
GlaI	GCGC	1 cut(s)	540
GluI	GCNGC	3 cut(s)	26, 287, 444
GsuI	CTGGAG	3 cut(s)	193, 1039, 1077
HaeIII	GGCC	2 cut(s)	295, 1117
HapII	CCGG	1 cut(s)	1114
HhaI	GCGC	1 cut(s)	541
Hin1II	CATG	3 cut(s)	340, 392, 427
Hin6I	GCGC	1 cut(s)	539
HinP1I	GCGC	1 cut(s)	539
HindIII	AAGCTT	2 cut(s)	152, 305
HinfI	GANTC	4 cut(s)	225, 312, 614, 640
HpaII	CCGG	1 cut(s)	1114
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	3 cut(s)	555, 938, 1095
Hpy188I	TCNGA	3 cut(s)	202, 349, 822
Hpy188III	TCNNGA	5 cut(s)	54, 172, 413, 644, 876
Hpy8I	GTNNAC	3 cut(s)	555, 938, 1095
HpyAV	CCTTC	5 cut(s)	112, 133, 259, 686, 737
HpyCH4III	ACNGT	1 cut(s)	552
HpyCH4IV	ACGT	2 cut(s)	432, 734
HpyCH4V	TGCA	7 cut(s)	68, 278, 289, 676, 706, 1006, 1095
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	7 cut(s)	21, 155, 219, 243, 698, 840, 855
HpySE526I	ACGT	2 cut(s)	432, 734
Hsp92II	CATG	3 cut(s)	340, 392, 427
HspAI	GCGC	1 cut(s)	539
Ksp22I	TGATCA	1 cut(s)	1129
Kzo9I	GATC	9 cut(s)	123, 333, 406, 567, 652, 817, 878, 956, 1129
LmnI	GCTCC	3 cut(s)	15, 508, 669
Lsp1109I	GCAGC	3 cut(s)	12, 273, 455
LweI	GCATC	1 cut(s)	69
MaeII	ACGT	2 cut(s)	432, 734
MaeIII	GTNAC	2 cut(s)	16, 238
MalI	GATC	9 cut(s)	125, 335, 408, 569, 654, 819, 880, 958, 1131
MbiI	CCGCTC	2 cut(s)	49, 82
MboI	GATC	9 cut(s)	123, 333, 406, 567, 652, 817, 878, 956, 1129
MboII	GAAGA	8 cut(s)	16, 217, 617, 845, 861, 864, 902, 912
MflI	RGATCY	1 cut(s)	817
MhlI	GDGCHC	1 cut(s)	1097
MlyI	GAGTC	1 cut(s)	234
MmeI	TCCRAC	1 cut(s)	973
MroXI	GAANNNNTTC	1 cut(s)	196
MseI	TTAA	5 cut(s)	573, 591, 687, 849, 915
MspCI	CTTAAG	1 cut(s)	914
MspI	CCGG	1 cut(s)	1114
MspR9I	CCNGG	2 cut(s)	14, 954
MssI	GTTTAAAC	1 cut(s)	850
MvaI	CCWGG	2 cut(s)	14, 954
MwoI	GCNNNNNNNGC	1 cut(s)	292
NdeII	GATC	9 cut(s)	123, 333, 406, 567, 652, 817, 878, 956, 1129
NlaIII	CATG	3 cut(s)	340, 392, 427
NlaIV	GGNNCC	3 cut(s)	296, 485, 985
NmeAIII	GCCGAG	1 cut(s)	515
PdmI	GAANNNNTTC	1 cut(s)	196
PfeI	GAWTC	3 cut(s)	312, 614, 640
PflFI	GACNNNGTC	1 cut(s)	1037
PfoI	TCCNGGA	1 cut(s)	952
PkrI	GCNGC	3 cut(s)	27, 288, 445
PleI	GAGTC	1 cut(s)	233
PmeI	GTTTAAAC	1 cut(s)	850
PpsI	GAGTC	1 cut(s)	233
PpuMI	RGGWCCY	1 cut(s)	364
Psp5II	RGGWCCY	1 cut(s)	364
Psp6I	CCWGG	2 cut(s)	12, 952
PspGI	CCWGG	2 cut(s)	12, 952
PspN4I	GGNNCC	3 cut(s)	296, 485, 985
PspPI	GGNCC	4 cut(s)	32, 294, 364, 1039
PspPPI	RGGWCCY	1 cut(s)	364
PstNI	CAGNNNCTG	2 cut(s)	171, 400
PsuI	RGATCY	1 cut(s)	817
PsyI	GACNNNGTC	1 cut(s)	1037
RsaI	GTAC	3 cut(s)	526, 771, 920
RsaNI	GTAC	3 cut(s)	525, 770, 919
SaqAI	TTAA	5 cut(s)	573, 591, 687, 849, 915
SatI	GCNGC	3 cut(s)	26, 287, 444
Sau3AI	GATC	9 cut(s)	123, 333, 406, 567, 652, 817, 878, 956, 1129
Sau96I	GGNCC	4 cut(s)	32, 294, 364, 1039
SchI	GAGTC	1 cut(s)	234
ScrFI	CCNGG	2 cut(s)	14, 954
SduI	GDGCHC	1 cut(s)	1097
SfaNI	GCATC	1 cut(s)	69
SinI	GGWCC	3 cut(s)	32, 364, 1039
SmlI	CTYRAG	7 cut(s)	44, 77, 91, 299, 368, 914, 1069
SmoI	CTYRAG	7 cut(s)	44, 77, 91, 299, 368, 914, 1069
SsiI	CCGC	6 cut(s)	49, 82, 110, 521, 710, 987
StyD4I	CCNGG	2 cut(s)	12, 952
TaaI	ACNGT	1 cut(s)	552
TaiI	ACGT	2 cut(s)	435, 737
TaqI	TCGA	3 cut(s)	357, 612, 1108
TatI	WGTACW	1 cut(s)	918
TfiI	GAWTC	3 cut(s)	312, 614, 640
Tru1I	TTAA	5 cut(s)	573, 591, 687, 849, 915
Tru9I	TTAA	5 cut(s)	573, 591, 687, 849, 915
TscAI	CASTG	1 cut(s)	557
TseI	GCWGC	3 cut(s)	25, 286, 443
TspDTI	ATGAA	3 cut(s)	17, 405, 471
TspGWI	ACGGA	2 cut(s)	53, 955
TspRI	CASTG	1 cut(s)	557
Tth111I	GACNNNGTC	1 cut(s)	1037
Vha464I	CTTAAG	1 cut(s)	914
VneI	GTGCAC	1 cut(s)	1093
VpaK11BI	GGWCC	3 cut(s)	32, 364, 1039
XmnI	GAANNNNTTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.