Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000930

Physical Location & Seq

Genomic Coordinates Reverse (-)

20725470 .. 20728093

Gene Structure 2624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55520.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCTGATCAAGGAACGGAAGGGAGCCAGCCAGTTGACCTTACTAAACATCCTTCAGGGATTGTTCCTACTCTTCAAAATATTGTCTCAACAGTGAACTTAGACTGCAAGCTTGATCTTAAAGCCATAGCTTTGCAAGCTAGGAATGCTGAATATAACCCCAAGCGTTTCGCTGCTGTAATCATGAGGATCAGAGAGCCAAAGACCACAGCGTTAATTTTTGCTTCTGGGAAAATGGTGTGTACCGGAGCTAAAAGTGAACATCTTTCAAAGCTTGCTGCAAGAAAGTATGCTCGGATTGTTCAAAAGCTTGGCTTTCCTGCAAAGTTCAAGGATTTTAAGATACAGAACATTGTAGGCTCATGTGATGTCAAATTCCCCATTAGGCTTGAAGGTCTTGCATACTCTCATAGTGCTTTCTCAAGTTACGAGCCTGAGCTATTTCCAGGATTGATATATAGGATGAAACTTCCAAAGATTGTACTGCTTATTTTTGTGTCAGGAAAGATTGTTATAACTGGAGCCAAGATGAGAGAAGAGACTTATACCGCATTTGAGAATATCTACCCAGTTCTTAGAGAATTCAGGAAGGTCCAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006352 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0017025 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203

Pfam Domains

Protein Families

TBP

Protein Analysis

200

Amino Acids

22.4

Weight (kDa)

9.75

Isoelectric Point (pI)

35.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TBP	PF00352	23 - 104	7.9e-33	Transcription factor TFIID (or TATA-binding protein, TBP)
TBP	PF00352	112 - 195	9.1e-34	Transcription factor TFIID (or TATA-binding protein, TBP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55520 AT1G55520 AT1G55520 AT1G55520 AT3G13445 AT3G13445
fragaria_vesca	FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_3g32401 FvH4_3g32450 FvH4_3g45850 FvH4_3g45850 FvH4_4g21060 FvH4_6g12030
malus_domestica	MD03G1002100.v1.1 MD11G1002100.v1.1 MD12G1002700.v1.1 MD12G1176800.v1.1 MD14G1002000.v1.1
prunus_persica	Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.7G002800_v2.0.a1 Prupe.7G002800_v2.0.a1
pyrus_communis	pycom11g00190 pycom12g16680
rosa_chinensis	RchiOBHm_Chr3g0463861 RchiOBHm_Chr3g0497421 RchiOBHm_Chr5g0083961
rosa_laevigata	RLG00000022465 RLG00000024749 RLG00000035285 RLG00000037068
rosa_multiflora	Rmu_sc0004796.1_g000003
rosa_roxburghii	Rroxscaffold_1G00000660 Rroxscaffold_6G00388060 Rroxscaffold_6G00416240
rosa_rugosa	Rorug03G0068600 Rorug03G0292900 Rorug05G0488000 Rorug05G0488100
rosa_samantha	Rh3AG125700 Rh3AG336400 Rh3BG129800 Rh3BG374500 Rh3CG132300 Rh3CG370600 Rh3DG130900 Rh3DG371500 Rh3DG372800 Rh5AG540800 Rh5BG565800 Rh5CG587700 Rh5DG574400
rosa_wichuraiana	Rw3G010610 Rw3G029570 Rw5G050290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	515
AciI	CCGC	1 cut(s)	549
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	2 cut(s)	374, 581
AcuI	CTGAAG	1 cut(s)	39
AfaI	GTAC	2 cut(s)	244, 483
AgsI	TTSAA	5 cut(s)	77, 270, 305, 331, 392
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	7 cut(s)	112, 131, 140, 251, 274, 310, 439
AluI	AGCT	7 cut(s)	112, 131, 140, 251, 274, 310, 439
Alw26I	GTCTC	2 cut(s)	91, 533
AlwI	GGATC	1 cut(s)	197
ApeKI	GCWGC	2 cut(s)	173, 278
ApoI	RAATTY	2 cut(s)	374, 581
AspS9I	GGNCC	1 cut(s)	592
AvaII	GGWCC	1 cut(s)	592
BbvI	GCAGC	2 cut(s)	160, 265
BciT130I	CCWGG	1 cut(s)	447
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	2 cut(s)	91, 533
BfaI	CTAG	1 cut(s)	141
BisI	GCNGC	2 cut(s)	174, 279
BlsI	GCNGC	2 cut(s)	175, 280
Bme1390I	CCNGG	1 cut(s)	447
Bme18I	GGWCC	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	592
BmiI	GGNNCC	2 cut(s)	26, 523
BmrFI	CCNGG	1 cut(s)	447
BmrI	ACTGGG	1 cut(s)	563
BmuI	ACTGGG	1 cut(s)	563
BpmI	CTGGAG	1 cut(s)	540
Bpu10I	CCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	406
BsaWI	WCCGGW	1 cut(s)	245
Bse1I	ACTGG	3 cut(s)	32, 523, 569
BseBI	CCWGG	1 cut(s)	447
BseGI	GGATG	2 cut(s)	49, 468
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	3 cut(s)	32, 523, 569
BseXI	GCAGC	2 cut(s)	160, 265
BsiSI	CCGG	1 cut(s)	246
BsmAI	GTCTC	2 cut(s)	91, 533
BsmI	GAATGC	1 cut(s)	151
Bsp143I	GATC	3 cut(s)	7, 115, 189
BspACI	CCGC	1 cut(s)	549
BspCNI	CTCAG	1 cut(s)	427
BspHI	TCATGA	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	26, 523
BspPI	GGATC	1 cut(s)	197
BsrI	ACTGG	3 cut(s)	32, 523, 569
BssMI	GATC	3 cut(s)	7, 115, 189
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	94
Bst6I	CTCTTC	2 cut(s)	78, 531
BstC8I	GCNNGC	4 cut(s)	29, 110, 138, 276
BstDEI	CTNAG	3 cut(s)	100, 435, 575
BstF5I	GGATG	2 cut(s)	49, 468
BstKTI	GATC	3 cut(s)	10, 118, 192
BstMAI	GTCTC	2 cut(s)	91, 533
BstMBI	GATC	3 cut(s)	7, 115, 189
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 146
BstNI	CCWGG	1 cut(s)	447
BstSCI	CCNGG	1 cut(s)	445
BstV1I	GCAGC	2 cut(s)	160, 265
BtsCI	GGATG	2 cut(s)	49, 468
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	4 cut(s)	29, 110, 138, 276
CciI	TCATGA	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	592
Csp6I	GTAC	2 cut(s)	243, 482
CviAII	CATG	2 cut(s)	184, 363
CviQI	GTAC	2 cut(s)	243, 482
DdeI	CTNAG	3 cut(s)	100, 435, 575
DpnI	GATC	3 cut(s)	9, 117, 191
DpnII	GATC	3 cut(s)	7, 115, 189
Eam1104I	CTCTTC	2 cut(s)	78, 531
EarI	CTCTTC	2 cut(s)	78, 531
Eco47I	GGWCC	1 cut(s)	592
Eco57I	CTGAAG	1 cut(s)	39
EcoRI	GAATTC	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	445
FaeI	CATG	2 cut(s)	187, 366
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FatI	CATG	2 cut(s)	183, 362
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	2 cut(s)	174, 279
FokI	GGATG	2 cut(s)	36, 475
Fsp4HI	GCNGC	2 cut(s)	174, 279
FspBI	CTAG	1 cut(s)	141
GluI	GCNGC	2 cut(s)	174, 279
GsuI	CTGGAG	1 cut(s)	540
HapII	CCGG	1 cut(s)	246
Hin1II	CATG	2 cut(s)	187, 366
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HindIII	AAGCTT	3 cut(s)	110, 272, 308
HpaII	CCGG	1 cut(s)	246
Hpy166II	GTNNAC	4 cut(s)	37, 97, 243, 260
Hpy188I	TCNGA	2 cut(s)	194, 297
Hpy188III	TCNNGA	3 cut(s)	184, 501, 586
Hpy8I	GTNNAC	4 cut(s)	37, 97, 243, 260
HpyAV	CCTTC	4 cut(s)	14, 63, 386, 583
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	5 cut(s)	108, 136, 281, 323, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 146
HpyF3I	CTNAG	3 cut(s)	100, 435, 575
Hsp92II	CATG	2 cut(s)	187, 366
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 115, 189
LmnI	GCTCC	3 cut(s)	24, 248, 521
Lsp1109I	GCAGC	2 cut(s)	160, 265
MaeI	CTAG	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	3 cut(s)	9, 117, 191
MboI	GATC	3 cut(s)	7, 115, 189
MboII	GAAGA	2 cut(s)	65, 548
MluCI	AATT	3 cut(s)	216, 374, 581
MnlI	CCTC	1 cut(s)	180
MseI	TTAA	3 cut(s)	120, 215, 339
MspI	CCGG	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	447
MwoI	GCNNNNNNNGC	2 cut(s)	137, 146
NdeII	GATC	3 cut(s)	7, 115, 189
NlaIII	CATG	2 cut(s)	187, 366
NlaIV	GGNNCC	2 cut(s)	26, 523
PagI	TCATGA	1 cut(s)	183
PctI	GAATGC	1 cut(s)	151
PfoI	TCCNGGA	1 cut(s)	445
PkrI	GCNGC	2 cut(s)	175, 280
PsiI	TTATAA	1 cut(s)	515
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	2 cut(s)	26, 523
PspPI	GGNCC	1 cut(s)	592
RsaI	GTAC	2 cut(s)	244, 483
RsaNI	GTAC	2 cut(s)	243, 482
SaqAI	TTAA	3 cut(s)	120, 215, 339
SatI	GCNGC	2 cut(s)	174, 279
Sau3AI	GATC	3 cut(s)	7, 115, 189
Sau96I	GGNCC	1 cut(s)	592
ScrFI	CCNGG	1 cut(s)	447
SinI	GGWCC	1 cut(s)	592
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
Sse9I	AATT	3 cut(s)	216, 374, 581
SsiI	CCGC	1 cut(s)	549
SspI	AATATT	1 cut(s)	82
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	445
TaaI	ACNGT	1 cut(s)	94
TasI	AATT	3 cut(s)	216, 374, 581
TatI	WGTACW	1 cut(s)	481
Tru1I	TTAA	3 cut(s)	120, 215, 339
Tru9I	TTAA	3 cut(s)	120, 215, 339
TscAI	CASTG	1 cut(s)	99
TseI	GCWGC	2 cut(s)	173, 278
TspDTI	ATGAA	1 cut(s)	479
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	99
VpaK11BI	GGWCC	1 cut(s)	592
XapI	RAATTY	2 cut(s)	374, 581
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.