Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000930

Physical Location & Seq

Genomic Coordinates Reverse (-)

439296 .. 444059

Gene Structure 4764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1002700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGGGGATCAAAGTGGATTAGAAGAGAGCCAACCTGTAGATCTTTCCATTCACCCCTCTGGCATCGTTCCCACTCTCCAGAATATCGTATCTACAGTTAACTTGGATTGTAAATTGGATCTTAAGCAAATTGCGTTGCAAGCTCGAAATGCAGAATACAACCCCAAGCGTTTTGCTGCTGTAATTATGAGAATAAGGGAGCCAAAAACTACAGCTTTGATTTTTGCCTCTGGGAAGATGGTATGCACAGGTGCAAAAAGTGAACATCAATCAAAACTGGCAGCGAGGAAGTATGCTCGAATCATTCAAAAGCTTGGGTTTAATGCTAAATTTAAGGATTTCAAGATTCAAAATATTGTTGGCTCCTGTGATGTTAAATTTCCGATAAGACTTGAGGGTCTTGCATACTCCCACGGTGCCTTTTCAAGTTATGAGCCAGAGCTTTTCCCGGGGCTGATATATCGAATGAAGCAGCCGAAGATTGTTCTTCTTATATTTGTGTCGGGGAAAATTGTTATTACGGGTGCAAAGGTGAGGGATGACACATACAAGGCCTTTGAAAACATATACCCTGTCCTTACAGAGTTCAGGAAGGTCCAGCAATGGTGCGCCCTCCCTTCCCTCCATCCTACTTACTTATACCAGACGACGTTAGCGTTTGCTGGGAGGCAGACACGCATCTCTGAAGGTAGCTTGCGGTGCTGTCGTAGGCAATCCCTTGTGGTGCTGGTGCGACATATTTTTGGTTATTTCTGGTTGGGTAGCGAAGGGGTTAGCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203

Pfam Domains

Protein Families

TBP

Protein Analysis

261

Amino Acids

29.21

Weight (kDa)

9.65

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TBP	PF00352	24 - 105	6.4e-34	Transcription factor TFIID (or TATA-binding protein, TBP)
TBP	PF00352	113 - 196	1.3e-33	Transcription factor TFIID (or TATA-binding protein, TBP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55520 AT1G55520 AT1G55520 AT1G55520 AT3G13445 AT3G13445
fragaria_vesca	FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_3g32401 FvH4_3g32450 FvH4_3g45850 FvH4_3g45850 FvH4_4g21060 FvH4_6g12030
malus_domestica	MD03G1002100.v1.1 MD11G1002100.v1.1 MD12G1002700.v1.1 MD12G1176800.v1.1 MD14G1002000.v1.1
prunus_persica	Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.7G002800_v2.0.a1 Prupe.7G002800_v2.0.a1
pyrus_communis	pycom11g00190 pycom12g16680
rosa_chinensis	RchiOBHm_Chr3g0463861 RchiOBHm_Chr3g0497421 RchiOBHm_Chr5g0083961
rosa_laevigata	RLG00000022465 RLG00000024749 RLG00000035285 RLG00000037068
rosa_multiflora	Rmu_sc0004796.1_g000003
rosa_roxburghii	Rroxscaffold_1G00000660 Rroxscaffold_6G00388060 Rroxscaffold_6G00416240
rosa_rugosa	Rorug03G0068600 Rorug03G0292900 Rorug05G0488000 Rorug05G0488100
rosa_samantha	Rh3AG125700 Rh3AG336400 Rh3BG129800 Rh3BG374500 Rh3CG132300 Rh3CG370600 Rh3DG130900 Rh3DG371500 Rh3DG372800 Rh5AG540800 Rh5BG565800 Rh5CG587700 Rh5DG574400
rosa_wichuraiana	Rw3G010610 Rw3G029570 Rw5G050290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	396
AccB1I	GGYRCC	1 cut(s)	416
AciI	CCGC	1 cut(s)	697
AclWI	GGATC	2 cut(s)	15, 126
AcsI	RAATTY	2 cut(s)	329, 377
AcuI	CTGAAG	1 cut(s)	705
AfeI	AGCGCT	1 cut(s)	778
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	5 cut(s)	308, 343, 350, 426, 560
AluBI	AGCT	5 cut(s)	143, 215, 313, 442, 693
AluI	AGCT	5 cut(s)	143, 215, 313, 442, 693
AlwI	GGATC	2 cut(s)	15, 126
Ama87I	CYCGRG	1 cut(s)	448
Aor51HI	AGCGCT	1 cut(s)	778
AoxI	GGCC	1 cut(s)	552
ApeKI	GCWGC	3 cut(s)	176, 281, 472
ApoI	RAATTY	2 cut(s)	329, 377
AspLEI	GCGC	2 cut(s)	611, 779
AspS9I	GGNCC	1 cut(s)	595
AsuC2I	CCSGG	2 cut(s)	449, 450
AsuHPI	GGTGA	2 cut(s)	44, 544
AvaI	CYCGRG	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	595
BanI	GGYRCC	1 cut(s)	416
BbvI	GCAGC	3 cut(s)	163, 293, 484
BccI	CCATC	2 cut(s)	232, 633
BcnI	CCSGG	2 cut(s)	449, 450
BfmI	CTRYAG	3 cut(s)	36, 93, 210
BfoI	RGCGCY	1 cut(s)	780
BfrI	CTTAAG	1 cut(s)	122
BglII	AGATCT	1 cut(s)	40
BisI	GCNGC	3 cut(s)	177, 282, 473
BlsI	GCNGC	3 cut(s)	178, 283, 474
Bme1390I	CCNGG	2 cut(s)	449, 450
Bme18I	GGWCC	1 cut(s)	595
BmeT110I	CYCGRG	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	595
BmiI	GGNNCC	3 cut(s)	201, 364, 418
BmrFI	CCNGG	2 cut(s)	449, 450
BmsI	GCATC	2 cut(s)	72, 687
BpmI	CTGGAG	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	2 cut(s)	449, 450
BsaJI	CCNNGG	3 cut(s)	412, 448, 449
Bse1I	ACTGG	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	608
BseDI	CCNNGG	3 cut(s)	412, 448, 449
BseGI	GGATG	2 cut(s)	544, 625
BseMI	GCAATG	1 cut(s)	608
BseNI	ACTGG	1 cut(s)	282
BseXI	GCAGC	3 cut(s)	163, 293, 484
BseYI	CCCAGC	1 cut(s)	662
BshFI	GGCC	1 cut(s)	554
BshNI	GGYRCC	1 cut(s)	416
BsiHKCI	CYCGRG	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	449
BsnI	GGCC	1 cut(s)	554
BsoBI	CYCGRG	1 cut(s)	448
Bsp143I	GATC	3 cut(s)	7, 40, 118
BspACI	CCGC	1 cut(s)	697
BspANI	GGCC	1 cut(s)	554
BspLI	GGNNCC	3 cut(s)	201, 364, 418
BspPI	GGATC	2 cut(s)	15, 126
BspT107I	GGYRCC	1 cut(s)	416
BspTI	CTTAAG	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	608
BsrI	ACTGG	1 cut(s)	282
BssECI	CCNNGG	3 cut(s)	412, 448, 449
BssMI	GATC	3 cut(s)	7, 40, 118
Bst4CI	ACNGT	2 cut(s)	97, 416
Bst6I	CTCTTC	1 cut(s)	18
BstAFI	CTTAAG	1 cut(s)	122
BstC8I	GCNNGC	2 cut(s)	141, 695
BstDEI	CTNAG	1 cut(s)	780
BstDSI	CCRYGG	1 cut(s)	412
BstF5I	GGATG	2 cut(s)	544, 625
BstH2I	RGCGCY	1 cut(s)	780
BstHHI	GCGC	2 cut(s)	611, 779
BstKTI	GATC	3 cut(s)	10, 43, 121
BstMBI	GATC	3 cut(s)	7, 40, 118
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 149, 699
BstSCI	CCNGG	2 cut(s)	447, 448
BstSFI	CTRYAG	3 cut(s)	36, 93, 210
BstV1I	GCAGC	3 cut(s)	163, 293, 484
BstX2I	RGATCY	2 cut(s)	40, 118
BstYI	RGATCY	2 cut(s)	40, 118
BsuRI	GGCC	1 cut(s)	554
BtgI	CCRYGG	1 cut(s)	412
BtsCI	GGATG	2 cut(s)	544, 625
Cac8I	GCNNGC	2 cut(s)	141, 695
CfoI	GCGC	2 cut(s)	611, 779
Cfr13I	GGNCC	1 cut(s)	595
Cfr9I	CCCGGG	1 cut(s)	448
DdeI	CTNAG	1 cut(s)	780
DpnI	GATC	3 cut(s)	9, 42, 120
DpnII	GATC	3 cut(s)	7, 40, 118
DrdI	GACNNNNNNGTC	1 cut(s)	396
DseDI	GACNNNNNNGTC	1 cut(s)	396
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco147I	AGGCCT	1 cut(s)	554
Eco47I	GGWCC	1 cut(s)	595
Eco47III	AGCGCT	1 cut(s)	778
Eco57I	CTGAAG	1 cut(s)	705
Eco88I	CYCGRG	1 cut(s)	448
Fnu4HI	GCNGC	3 cut(s)	177, 282, 473
FokI	GGATG	2 cut(s)	551, 612
Fsp4HI	GCNGC	3 cut(s)	177, 282, 473
GlaI	GCGC	2 cut(s)	610, 778
GluI	GCNGC	3 cut(s)	177, 282, 473
GsaI	CCCAGC	1 cut(s)	666
GsuI	CTGGAG	1 cut(s)	62
HaeII	RGCGCY	1 cut(s)	780
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	1 cut(s)	449
HhaI	GCGC	2 cut(s)	611, 779
Hin6I	GCGC	2 cut(s)	609, 777
HinP1I	GCGC	2 cut(s)	609, 777
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	2 cut(s)	300, 346
HpaI	GTTAAC	1 cut(s)	100
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	2 cut(s)	44, 544
Hpy166II	GTNNAC	2 cut(s)	100, 263
Hpy188I	TCNGA	2 cut(s)	384, 685
Hpy188III	TCNNGA	3 cut(s)	79, 343, 589
Hpy8I	GTNNAC	2 cut(s)	100, 263
Hpy99I	CGWCG	1 cut(s)	652
HpyAV	CCTTC	4 cut(s)	586, 627, 680, 761
HpyCH4III	ACNGT	2 cut(s)	97, 416
HpyCH4IV	ACGT	1 cut(s)	650
HpyCH4V	TGCA	6 cut(s)	139, 152, 246, 254, 404, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 149, 699
HpyF3I	CTNAG	1 cut(s)	780
HpySE526I	ACGT	1 cut(s)	650
HspAI	GCGC	2 cut(s)	609, 777
KspAI	GTTAAC	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	7, 40, 118
LmnI	GCTCC	2 cut(s)	199, 368
Lsp1109I	GCAGC	3 cut(s)	163, 293, 484
LweI	GCATC	2 cut(s)	72, 687
MaeII	ACGT	1 cut(s)	650
MalI	GATC	3 cut(s)	9, 42, 120
MboI	GATC	3 cut(s)	7, 40, 118
MboII	GAAGA	4 cut(s)	35, 247, 479, 490
MflI	RGATCY	2 cut(s)	40, 118
MluCI	AATT	6 cut(s)	113, 129, 183, 329, 377, 510
MnlI	CCTC	8 cut(s)	67, 238, 279, 388, 528, 623, 632, 660
MseI	TTAA	5 cut(s)	99, 123, 321, 333, 375
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	449, 450
MwoI	GCNNNNNNNGC	3 cut(s)	140, 149, 699
NciI	CCSGG	2 cut(s)	449, 450
NdeII	GATC	3 cut(s)	7, 40, 118
NlaIV	GGNNCC	3 cut(s)	201, 364, 418
PceI	AGGCCT	1 cut(s)	554
PcsI	WCGNNNNNNNCGW	1 cut(s)	653
PfeI	GAWTC	2 cut(s)	300, 346
PkrI	GCNGC	3 cut(s)	178, 283, 474
PspFI	CCCAGC	1 cut(s)	662
PspN4I	GGNNCC	3 cut(s)	201, 364, 418
PspPI	GGNCC	1 cut(s)	595
PsuI	RGATCY	2 cut(s)	40, 118
SaqAI	TTAA	5 cut(s)	99, 123, 321, 333, 375
SatI	GCNGC	3 cut(s)	177, 282, 473
Sau3AI	GATC	3 cut(s)	7, 40, 118
Sau96I	GGNCC	1 cut(s)	595
ScrFI	CCNGG	2 cut(s)	449, 450
SfaNI	GCATC	2 cut(s)	72, 687
SfcI	CTRYAG	3 cut(s)	36, 93, 210
SinI	GGWCC	1 cut(s)	595
SmaI	CCCGGG	1 cut(s)	450
SmlI	CTYRAG	2 cut(s)	122, 392
SmoI	CTYRAG	2 cut(s)	122, 392
Sse9I	AATT	6 cut(s)	113, 129, 183, 329, 377, 510
SseBI	AGGCCT	1 cut(s)	554
SsiI	CCGC	1 cut(s)	697
SspI	AATATT	1 cut(s)	355
StuI	AGGCCT	1 cut(s)	554
StyD4I	CCNGG	2 cut(s)	447, 448
TaaI	ACNGT	2 cut(s)	97, 416
TaiI	ACGT	1 cut(s)	653
TaqI	TCGA	3 cut(s)	145, 298, 463
TasI	AATT	6 cut(s)	113, 129, 183, 329, 377, 510
TfiI	GAWTC	2 cut(s)	300, 346
Tru1I	TTAA	5 cut(s)	99, 123, 321, 333, 375
Tru9I	TTAA	5 cut(s)	99, 123, 321, 333, 375
TseI	GCWGC	3 cut(s)	176, 281, 472
TspDTI	ATGAA	1 cut(s)	482
TspMI	CCCGGG	1 cut(s)	448
Vha464I	CTTAAG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	595
XapI	RAATTY	2 cut(s)	329, 377
XmaI	CCCGGG	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.