Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000930

Physical Location & Seq

Genomic Coordinates Forward (+)

67150243 .. 67151893

Gene Structure 1651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0488100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGGCTCAAGAAGTATCAGATTGGAAGAATATCAGCTTGAAGGCATTAGTGGACAAGGGGAGAAACAGAGTTATCTTCGTAGAGGCCGATAATGATTTCATTGATGTTCTCTTCAGTTTTTTGACATTACCAATTGGAAAAATTGTCAGGCTTGCCTGCGACCATTCAACACCACTGGAAATAGGTTGCATGAACAAATTGTATCAGAGTATTGAGAAGCTTGATGTGCAGGTTTTCAGGTCCAATGCATGTAGAGACATGTTGTTACTTCCGCACAGTGCAGCTAACTATCATTGCAAGAACCTCAAATTGAAAATTATTGACGATGCTGAGCCAAGACGGTTTAACTGCTATTATGATTCTCATTCCTGGTACAGTTATTATTCAACTGTTTCTTGCCCTTCCTGTCCAAGTCCCATGAATTTTGAAATATATCTTTCAGAGGGTGATTCTCAAGTTGGAGGGGTCTTTGTAAAAAAGCGAGCCAGGGTTATAATTACTGATGATTTACAAGTGATACCCCCATTAAGTGCAGCTAGCATTTCCTTGTTTACCAAGCTTGGAGCCACGAATAACAATACCACTGAGGAGCTAACTTTCAGTATTGGAGTCGAGCAGGTTTTGAATTTGCTTGTGAGCTCATTTGTATCAAAAACACCTTTCACTGAAACTCTGCTGAAGCCTAATCCTGTACCAAAATTAGGTTGTGTGAATTTCAGTCAAGGAAAATGTATTGAATCTCAAACGTCGGGGGCCTCGATAGATGTGGAAAAAGAAAACATCTCTGTCAAGCTTATAGTGAGTAAATCAAAGAATGTGGTTTGCTATGCAGAAGTACGAGAGGATTTTGTTAATTTGATCTTCAGTTTCTTGACTCTTCCTCTTGGGTTTATATTAAAGCAGATGCTGGATTCCCCTTGGAAAGGATGTATTGATCAGTTGTGCAAGGGTGTCCTGGATTTTGATGAGCAATTTTTTAAGTCAAATTACCACAAGGAATTGCTATGCAATCCCAAACTTGTTCCTGGGTTCAGCTATGAGAACAATCTTTTAGGAATTGAGGAGGCCGTGTACTATAAGTTTTCTGGTCGTAGGTTGACTGCTGATAGATCCATTATCCCTTCTATGTCCTTGGAGGCACTTAAAGCTAAATTTTTGGATCCCAAATCCCAGGGTGATAACGATAGAAATGCTAAGGGATTCTTATATGAACCCGCAATTTTCACGGTAACTGATAATTTGGATGTAAGGCCAGTATCTCCAATCTTTCAATTGTCTGTTCTTAATGATTTGAAGGTACATTTCACTGATATTGAGGACCGAACTGTGCATGTTGGCAAGAACGAGGCTTTGCGTCTTTTGGTGGCTTCTGTTGTTTCTGACTCAGTTCTTACCAATGTTTTCCTACGGAAGCCAAAGGAGCCATCCATTAAGCAAGAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203

Pfam Domains

Protein Families

TBP

Protein Analysis

481

Amino Acids

54.08

Weight (kDa)

6.23

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF674	PF05056	9 - 447	7.8e-116	Protein of unknown function (DUF674)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55520 AT1G55520 AT1G55520 AT1G55520 AT3G13445 AT3G13445
fragaria_vesca	FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_3g32401 FvH4_3g32450 FvH4_3g45850 FvH4_3g45850 FvH4_4g21060 FvH4_6g12030
malus_domestica	MD03G1002100.v1.1 MD11G1002100.v1.1 MD12G1002700.v1.1 MD12G1176800.v1.1 MD14G1002000.v1.1
prunus_persica	Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.7G002800_v2.0.a1 Prupe.7G002800_v2.0.a1
pyrus_communis	pycom11g00190 pycom12g16680
rosa_chinensis	RchiOBHm_Chr3g0463861 RchiOBHm_Chr3g0497421 RchiOBHm_Chr5g0083961
rosa_laevigata	RLG00000022465 RLG00000024749 RLG00000035285 RLG00000037068
rosa_multiflora	Rmu_sc0004796.1_g000003
rosa_roxburghii	Rroxscaffold_1G00000660 Rroxscaffold_6G00388060 Rroxscaffold_6G00416240
rosa_rugosa	Rorug03G0068600 Rorug03G0292900 Rorug05G0488000 Rorug05G0488100
rosa_samantha	Rh3AG125700 Rh3AG336400 Rh3BG129800 Rh3BG374500 Rh3CG132300 Rh3CG370600 Rh3DG130900 Rh3DG371500 Rh3DG372800 Rh5AG540800 Rh5BG565800 Rh5CG587700 Rh5DG574400
rosa_wichuraiana	Rw3G010610 Rw3G029570 Rw5G050290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	494
Acc36I	ACCTGC	2 cut(s)	220, 607
AciI	CCGC	2 cut(s)	272, 1215
AclWI	GGATC	3 cut(s)	1104, 1154, 1167
AcsI	RAATTY	4 cut(s)	421, 625, 712, 1151
AcuI	CTGAAG	3 cut(s)	97, 698, 847
AfaI	GTAC	5 cut(s)	374, 693, 837, 1073, 1299
AfiI	CCNNNNNNNGG	2 cut(s)	701, 923
AflIII	ACRYGT	1 cut(s)	258
AgsI	TTSAA	9 cut(s)	40, 168, 313, 387, 428, 625, 737, 1271, 1294
AjnI	CCWGG	5 cut(s)	368, 485, 954, 1024, 1170
Alw21I	GWGCWC	1 cut(s)	641
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	3 cut(s)	1104, 1154, 1167
AlwNI	CAGNNNCTG	1 cut(s)	907
AoxI	GGCC	4 cut(s)	84, 753, 1065, 1250
ApeKI	GCWGC	2 cut(s)	281, 533
ApoI	RAATTY	4 cut(s)	421, 625, 712, 1151
AspS9I	GGNCC	3 cut(s)	240, 753, 1318
AsuHPI	GGTGA	2 cut(s)	458, 1187
AsuNHI	GCTAGC	1 cut(s)	536
AvaII	GGWCC	2 cut(s)	240, 1318
BamHI	GGATCC	1 cut(s)	1159
BanII	GRGCYC	1 cut(s)	641
Bbv12I	GWGCWC	1 cut(s)	641
BbvI	GCAGC	2 cut(s)	293, 545
BccI	CCATC	1 cut(s)	1432
BceAI	ACGGC	1 cut(s)	1052
BcgI	CGANNNNNNTGC	2 cut(s)	1172, 1206
BciT130I	CCWGG	5 cut(s)	370, 487, 956, 1026, 1172
BclI	TGATCA	1 cut(s)	934
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	1 cut(s)	537
BfuAI	ACCTGC	2 cut(s)	220, 607
BisI	GCNGC	2 cut(s)	282, 534
BlpI	GCTNAGC	1 cut(s)	330
BlsI	GCNGC	2 cut(s)	283, 535
Bme1390I	CCNGG	5 cut(s)	370, 487, 956, 1026, 1172
Bme18I	GGWCC	2 cut(s)	240, 1318
BmgT120I	GGNCC	3 cut(s)	240, 753, 1318
BmiI	GGNNCC	4 cut(s)	565, 754, 1161, 1422
BmrFI	CCNGG	5 cut(s)	370, 487, 956, 1026, 1172
BmsI	GCATC	2 cut(s)	316, 894
BmtI	GCTAGC	1 cut(s)	540
Bpu10I	CCTNAGC	1 cut(s)	1194
Bpu1102I	GCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	438
BsaJI	CCNNGG	6 cut(s)	486, 917, 1025, 1131, 1170, 1171
BsaXI	ACNNNNNCTCC	2 cut(s)	1055, 1085
Bsc4I	CCNNNNNNNGG	2 cut(s)	701, 923
Bse1I	ACTGG	2 cut(s)	180, 1253
Bse3DI	GCAATG	1 cut(s)	292
BseBI	CCWGG	5 cut(s)	370, 487, 956, 1026, 1172
BseDI	CCNNGG	6 cut(s)	486, 917, 1025, 1131, 1170, 1171
BseGI	GGATG	3 cut(s)	932, 1249, 1424
BseLI	CCNNNNNNNGG	2 cut(s)	701, 923
BseMI	GCAATG	1 cut(s)	292
BseMII	CTCAG	3 cut(s)	321, 576, 1398
BseNI	ACTGG	2 cut(s)	180, 1253
BseRI	GAGGAG	2 cut(s)	602, 1076
BseXI	GCAGC	2 cut(s)	293, 545
BsgI	GTGCAG	3 cut(s)	248, 300, 552
BshFI	GGCC	4 cut(s)	86, 755, 1067, 1252
BsiHKAI	GWGCWC	1 cut(s)	641
BslFI	GGGAC	1 cut(s)	399
BslI	CCNNNNNNNGG	2 cut(s)	701, 923
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	399
BsnI	GGCC	4 cut(s)	86, 755, 1067, 1252
Bsp1286I	GDGCHC	1 cut(s)	641
Bsp143I	GATC	4 cut(s)	858, 934, 1109, 1159
Bsp1720I	GCTNAGC	1 cut(s)	330
BspACI	CCGC	2 cut(s)	272, 1215
BspANI	GGCC	4 cut(s)	86, 755, 1067, 1252
BspCNI	CTCAG	3 cut(s)	322, 577, 1397
BspLI	GGNNCC	4 cut(s)	565, 754, 1161, 1422
BspMI	ACCTGC	2 cut(s)	220, 607
BspOI	GCTAGC	1 cut(s)	540
BspPI	GGATC	3 cut(s)	1104, 1154, 1167
BsrDI	GCAATG	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	180, 1253
BssECI	CCNNGG	6 cut(s)	486, 917, 1025, 1131, 1170, 1171
BssMI	GATC	4 cut(s)	858, 934, 1109, 1159
BssT1I	CCWWGG	2 cut(s)	917, 1131
Bst2UI	CCWGG	5 cut(s)	370, 487, 956, 1026, 1172
Bst4CI	ACNGT	6 cut(s)	278, 342, 377, 391, 1228, 1327
Bst6I	CTCTTC	2 cut(s)	116, 882
BstC8I	GCNNGC	4 cut(s)	153, 157, 483, 538
BstDEI	CTNAG	4 cut(s)	330, 585, 1194, 1384
BstENI	CCTNNNNNAGG	1 cut(s)	921
BstF5I	GGATG	3 cut(s)	932, 1249, 1424
BstKTI	GATC	4 cut(s)	861, 937, 1112, 1162
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	4 cut(s)	858, 934, 1109, 1159
BstMWI	GCNNNNNNNGC	3 cut(s)	226, 1145, 1420
BstNI	CCWGG	5 cut(s)	370, 487, 956, 1026, 1172
BstNSI	RCATGY	3 cut(s)	252, 262, 1334
BstSCI	CCNGG	5 cut(s)	368, 485, 954, 1024, 1170
BstV1I	GCAGC	2 cut(s)	293, 545
BstX2I	RGATCY	2 cut(s)	1109, 1159
BstYI	RGATCY	2 cut(s)	1109, 1159
BsuRI	GGCC	4 cut(s)	86, 755, 1067, 1252
BtsCI	GGATG	3 cut(s)	932, 1249, 1424
BtsIMutI	CAGTG	5 cut(s)	173, 283, 582, 663, 1305
BveI	ACCTGC	2 cut(s)	220, 607
Cac8I	GCNNGC	4 cut(s)	153, 157, 483, 538
CaiI	CAGNNNCTG	1 cut(s)	907
Cfr13I	GGNCC	3 cut(s)	240, 753, 1318
CseI	GACGC	1 cut(s)	1343
Csp6I	GTAC	5 cut(s)	373, 692, 836, 1072, 1298
CspCI	CAANNNNNGTGG	2 cut(s)	798, 833
CviAII	CATG	5 cut(s)	190, 249, 259, 418, 1331
CviQI	GTAC	5 cut(s)	373, 692, 836, 1072, 1298
DdeI	CTNAG	4 cut(s)	330, 585, 1194, 1384
DpnI	GATC	4 cut(s)	860, 936, 1111, 1161
DpnII	GATC	4 cut(s)	858, 934, 1109, 1159
Eam1104I	CTCTTC	2 cut(s)	116, 882
EarI	CTCTTC	2 cut(s)	116, 882
Ecl136II	GAGCTC	1 cut(s)	639
Eco130I	CCWWGG	2 cut(s)	917, 1131
Eco24I	GRGCYC	1 cut(s)	641
Eco47I	GGWCC	2 cut(s)	240, 1318
Eco53kI	GAGCTC	1 cut(s)	639
Eco57I	CTGAAG	3 cut(s)	97, 698, 847
EcoICRI	GAGCTC	1 cut(s)	639
EcoNI	CCTNNNNNAGG	1 cut(s)	921
EcoO109I	RGGNCCY	1 cut(s)	753
EcoRII	CCWGG	5 cut(s)	368, 485, 954, 1024, 1170
EcoT14I	CCWWGG	2 cut(s)	917, 1131
EcoT22I	ATGCAT	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	641
ErhI	CCWWGG	2 cut(s)	917, 1131
FaeI	CATG	5 cut(s)	193, 252, 262, 421, 1334
FalI	AAGNNNNNCTT	2 cut(s)	1187, 1219
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	5 cut(s)	189, 248, 258, 417, 1330
FauI	CCCGC	1 cut(s)	1222
FbaI	TGATCA	1 cut(s)	934
Fnu4HI	GCNGC	2 cut(s)	282, 534
FokI	GGATG	3 cut(s)	939, 1256, 1411
FriOI	GRGCYC	1 cut(s)	641
Fsp4HI	GCNGC	2 cut(s)	282, 534
FspBI	CTAG	1 cut(s)	537
GluI	GCNGC	2 cut(s)	282, 534
HaeIII	GGCC	4 cut(s)	86, 755, 1067, 1252
HgaI	GACGC	1 cut(s)	1343
Hin1II	CATG	5 cut(s)	193, 252, 262, 421, 1334
HincII	GTYRAC	1 cut(s)	1098
HindII	GTYRAC	1 cut(s)	1098
HindIII	AAGCTT	3 cut(s)	218, 557, 791
HinfI	GANTC	8 cut(s)	359, 449, 609, 737, 874, 911, 1200, 1382
HphI	GGTGA	2 cut(s)	458, 1187
Hpy166II	GTNNAC	4 cut(s)	52, 552, 1072, 1098
Hpy188I	TCNGA	4 cut(s)	19, 207, 442, 1381
Hpy188III	TCNNGA	2 cut(s)	8, 871
Hpy8I	GTNNAC	4 cut(s)	52, 552, 1072, 1098
Hpy99I	CGWCG	1 cut(s)	751
HpyAV	CCTTC	4 cut(s)	34, 411, 1131, 1288
HpyCH4III	ACNGT	6 cut(s)	278, 342, 377, 391, 1228, 1327
HpyCH4IV	ACGT	1 cut(s)	746
HpyF10VI	GCNNNNNNNGC	3 cut(s)	226, 1145, 1420
HpyF3I	CTNAG	4 cut(s)	330, 585, 1194, 1384
HpySE526I	ACGT	1 cut(s)	746
Hsp92II	CATG	5 cut(s)	193, 252, 262, 421, 1334
Ksp22I	TGATCA	1 cut(s)	934
Kzo9I	GATC	4 cut(s)	858, 934, 1109, 1159
LmnI	GCTCC	3 cut(s)	563, 589, 1420
Lsp1109I	GCAGC	2 cut(s)	293, 545
LweI	GCATC	2 cut(s)	316, 894
MaeI	CTAG	1 cut(s)	537
MaeII	ACGT	1 cut(s)	746
MaeIII	GTNAC	2 cut(s)	264, 1228
MalI	GATC	4 cut(s)	860, 936, 1111, 1161
MboI	GATC	4 cut(s)	858, 934, 1109, 1159
MboII	GAAGA	5 cut(s)	37, 67, 103, 853, 869
MfeI	CAATTG	2 cut(s)	132, 1271
MflI	RGATCY	2 cut(s)	1109, 1159
MhlI	GDGCHC	1 cut(s)	641
MlyI	GAGTC	3 cut(s)	618, 868, 1376
MmeI	TCCRAC	1 cut(s)	439
Mph1103I	ATGCAT	1 cut(s)	250
MseI	TTAA	8 cut(s)	345, 527, 852, 896, 978, 1143, 1284, 1431
MspR9I	CCNGG	5 cut(s)	370, 487, 956, 1026, 1172
MunI	CAATTG	2 cut(s)	132, 1271
MvaI	CCWGG	5 cut(s)	370, 487, 956, 1026, 1172
MwoI	GCNNNNNNNGC	3 cut(s)	226, 1145, 1420
NdeII	GATC	4 cut(s)	858, 934, 1109, 1159
NheI	GCTAGC	1 cut(s)	536
NlaIII	CATG	5 cut(s)	193, 252, 262, 421, 1334
NlaIV	GGNNCC	4 cut(s)	565, 754, 1161, 1422
NsiI	ATGCAT	1 cut(s)	250
NspI	RCATGY	3 cut(s)	252, 262, 1334
PasI	CCCWGGG	1 cut(s)	1171
PciI	ACATGT	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 755
PfeI	GAWTC	5 cut(s)	359, 449, 737, 911, 1200
PfoI	TCCNGGA	1 cut(s)	954
PkrI	GCNGC	2 cut(s)	283, 535
PleI	GAGTC	3 cut(s)	617, 868, 1376
PpsI	GAGTC	3 cut(s)	617, 868, 1376
PscI	ACATGT	1 cut(s)	258
PsiI	TTATAA	1 cut(s)	494
Psp124BI	GAGCTC	1 cut(s)	641
Psp6I	CCWGG	5 cut(s)	368, 485, 954, 1024, 1170
PspGI	CCWGG	5 cut(s)	368, 485, 954, 1024, 1170
PspN4I	GGNNCC	4 cut(s)	565, 754, 1161, 1422
PspPI	GGNCC	3 cut(s)	240, 753, 1318
PstNI	CAGNNNCTG	1 cut(s)	907
PsuI	RGATCY	2 cut(s)	1109, 1159
RsaI	GTAC	5 cut(s)	374, 693, 837, 1073, 1299
RsaNI	GTAC	5 cut(s)	373, 692, 836, 1072, 1298
SacI	GAGCTC	1 cut(s)	641
SaqAI	TTAA	8 cut(s)	345, 527, 852, 896, 978, 1143, 1284, 1431
SatI	GCNGC	2 cut(s)	282, 534
Sau3AI	GATC	4 cut(s)	858, 934, 1109, 1159
Sau96I	GGNCC	3 cut(s)	240, 753, 1318
SchI	GAGTC	3 cut(s)	618, 868, 1376
ScrFI	CCNGG	5 cut(s)	370, 487, 956, 1026, 1172
SduI	GDGCHC	1 cut(s)	641
SfaNI	GCATC	2 cut(s)	316, 894
SinI	GGWCC	2 cut(s)	240, 1318
SmlI	CTYRAG	2 cut(s)	6, 453
SmoI	CTYRAG	2 cut(s)	6, 453
SsiI	CCGC	2 cut(s)	272, 1215
SspMI	CTAG	1 cut(s)	537
SstI	GAGCTC	1 cut(s)	641
StyD4I	CCNGG	5 cut(s)	368, 485, 954, 1024, 1170
StyI	CCWWGG	2 cut(s)	917, 1131
TaaI	ACNGT	6 cut(s)	278, 342, 377, 391, 1228, 1327
TaiI	ACGT	1 cut(s)	749
TaqI	TCGA	2 cut(s)	612, 758
TaqII	GACCGA	1 cut(s)	1335
TatI	WGTACW	1 cut(s)	1071
TfiI	GAWTC	5 cut(s)	359, 449, 737, 911, 1200
Tru1I	TTAA	8 cut(s)	345, 527, 852, 896, 978, 1143, 1284, 1431
Tru9I	TTAA	8 cut(s)	345, 527, 852, 896, 978, 1143, 1284, 1431
TscAI	CASTG	5 cut(s)	180, 283, 589, 670, 1312
TseI	GCWGC	2 cut(s)	281, 533
TspDTI	ATGAA	4 cut(s)	88, 206, 434, 1224
TspGWI	ACGGA	1 cut(s)	1423
TspRI	CASTG	5 cut(s)	180, 283, 589, 670, 1312
VpaK11BI	GGWCC	2 cut(s)	240, 1318
XagI	CCTNNNNNAGG	1 cut(s)	921
XapI	RAATTY	4 cut(s)	421, 625, 712, 1151
XceI	RCATGY	3 cut(s)	252, 262, 1334
XspI	CTAG	1 cut(s)	537
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.