Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000930

Physical Location & Seq

Genomic Coordinates Forward (+)

269965 .. 274279

Gene Structure 4315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G001900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCAGAACAAGGGTTAGAAGGAAGCCAACCAGTAGATCTCAAGAAGCACCCTTCTGGAATTGTCCCTACTCTCCAGAATATTGTCTCCACAGTCAATTTAGACTGCAAATTGGATCTCAAGGCCATTGCACTGCAAGCTCGTAACGCTGAATACAACCCCAAGCGTTTTGCTGCTGTGATTATGAGAATAAGAGAACCGAAGACGACTGCATTGATATTTGCATCTGGTAAGATGGTTTGTACGGGAGCTAAGAGTGAACAACAATCAAAATTGGCAGCACGAAAGTATGCTCGAATCATCCAGAAACTCGGTTTTCCAGCTCAGTTCAAGGATTTCAAAATCCAAAATATAGTTGGTTCTTGTGACGTGAAATTTCCCATAAGACTTGAAGGCCTGGCGTATTCCCATGGTGCCTTCTCAAGTTATGAACCAGAACTGTTCCCCGGCTTGATTTATCGGATGAAACAACCGAAGATTGTGCTTCTGATTTTTGTGTCTGGAAAAATAGTTCTTACAGGGGCGAAGGTAAGAGGTGAGACATATGAAGCCTTTGAGAACATTTACCCAGTTCTTACAGAGTTCAGGAAAAATCAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203

Pfam Domains

Protein Families

TBP

Protein Analysis

201

Amino Acids

22.34

Weight (kDa)

9.68

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55520 AT1G55520 AT1G55520 AT1G55520 AT3G13445 AT3G13445
fragaria_vesca	FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_3g32401 FvH4_3g32450 FvH4_3g45850 FvH4_3g45850 FvH4_4g21060 FvH4_6g12030
malus_domestica	MD03G1002100.v1.1 MD11G1002100.v1.1 MD12G1002700.v1.1 MD12G1176800.v1.1 MD14G1002000.v1.1
prunus_persica	Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.7G002800_v2.0.a1 Prupe.7G002800_v2.0.a1
pyrus_communis	pycom11g00190 pycom12g16680
rosa_chinensis	RchiOBHm_Chr3g0463861 RchiOBHm_Chr3g0497421 RchiOBHm_Chr5g0083961
rosa_laevigata	RLG00000022465 RLG00000024749 RLG00000035285 RLG00000037068
rosa_multiflora	Rmu_sc0004796.1_g000003
rosa_roxburghii	Rroxscaffold_1G00000660 Rroxscaffold_6G00388060 Rroxscaffold_6G00416240
rosa_rugosa	Rorug03G0068600 Rorug03G0292900 Rorug05G0488000 Rorug05G0488100
rosa_samantha	Rh3AG125700 Rh3AG336400 Rh3BG129800 Rh3BG374500 Rh3CG132300 Rh3CG370600 Rh3DG130900 Rh3DG371500 Rh3DG372800 Rh5AG540800 Rh5BG565800 Rh5CG587700 Rh5DG574400
rosa_wichuraiana	Rw3G010610 Rw3G029570 Rw5G050290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	413
AclWI	GGATC	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	374
AfaI	GTAC	1 cut(s)	244
AgsI	TTSAA	3 cut(s)	331, 340, 392
AjiI	CACGTC	1 cut(s)	370
AjnI	CCWGG	1 cut(s)	396
AloI	GAACNNNNNNTCC	2 cut(s)	495, 527
AluBI	AGCT	3 cut(s)	140, 251, 323
AluI	AGCT	3 cut(s)	140, 251, 323
Alw26I	GTCTC	2 cut(s)	91, 533
AlwI	GGATC	1 cut(s)	123
AoxI	GGCC	2 cut(s)	123, 394
ApeKI	GCWGC	2 cut(s)	173, 278
ApoI	RAATTY	1 cut(s)	374
AsuC2I	CCSGG	1 cut(s)	447
AsuHPI	GGTGA	1 cut(s)	548
BanI	GGYRCC	1 cut(s)	413
BbsI	GAAGAC	1 cut(s)	209
BbvI	GCAGC	2 cut(s)	160, 290
BccI	CCATC	1 cut(s)	229
BcgI	CGANNNNNNTGC	2 cut(s)	463, 497
BciT130I	CCWGG	1 cut(s)	398
BcnI	CCSGG	1 cut(s)	447
BcoDI	GTCTC	2 cut(s)	91, 533
BglII	AGATCT	1 cut(s)	37
BisI	GCNGC	2 cut(s)	174, 279
BlsI	GCNGC	2 cut(s)	175, 280
Bme1390I	CCNGG	2 cut(s)	398, 447
BmgBI	CACGTC	1 cut(s)	370
BmiI	GGNNCC	1 cut(s)	415
BmrFI	CCNGG	2 cut(s)	398, 447
BmrI	ACTGGG	1 cut(s)	563
BmsI	GCATC	1 cut(s)	233
BmuI	ACTGGG	1 cut(s)	563
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	59
BpuEI	CTTGAG	3 cut(s)	26, 104, 406
BpuMI	CCSGG	1 cut(s)	447
BsaJI	CCNNGG	2 cut(s)	409, 445
Bse1I	ACTGG	2 cut(s)	32, 569
Bse3DI	GCAATG	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	2 cut(s)	409, 445
BseGI	GGATG	2 cut(s)	300, 468
BseMI	GCAATG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	2 cut(s)	32, 569
BseXI	GCAGC	2 cut(s)	160, 290
BshFI	GGCC	2 cut(s)	125, 396
BshNI	GGYRCC	1 cut(s)	413
BsiSI	CCGG	1 cut(s)	447
BslFI	GGGAC	1 cut(s)	50
BsmAI	GTCTC	2 cut(s)	91, 533
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	2 cut(s)	125, 396
Bsp143I	GATC	2 cut(s)	37, 115
Bsp19I	CCATGG	1 cut(s)	409
BspANI	GGCC	2 cut(s)	125, 396
BspCNI	CTCAG	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	415
BspPI	GGATC	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	126
BsrI	ACTGG	2 cut(s)	32, 569
BssECI	CCNNGG	2 cut(s)	409, 445
BssMI	GATC	2 cut(s)	37, 115
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	2 cut(s)	94, 441
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	2 cut(s)	252, 324
BstDSI	CCRYGG	1 cut(s)	409
BstF5I	GGATG	2 cut(s)	300, 468
BstKTI	GATC	2 cut(s)	40, 118
BstMAI	GTCTC	2 cut(s)	91, 533
BstMBI	GATC	2 cut(s)	37, 115
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 146
BstNI	CCWGG	1 cut(s)	398
BstSCI	CCNGG	2 cut(s)	396, 445
BstV1I	GCAGC	2 cut(s)	160, 290
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	2 cut(s)	37, 115
BstYI	RGATCY	2 cut(s)	37, 115
BsuRI	GGCC	2 cut(s)	125, 396
BtgI	CCRYGG	1 cut(s)	409
BtrI	CACGTC	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	300, 468
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	1 cut(s)	410
CviJI	RGCY	8 cut(s)	27, 125, 140, 251, 323, 396, 450, 551
CviKI_1	RGCY	8 cut(s)	27, 125, 140, 251, 323, 396, 450, 551
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	2 cut(s)	252, 324
DpnI	GATC	2 cut(s)	39, 117
DpnII	GATC	2 cut(s)	37, 115
Eco130I	CCWWGG	1 cut(s)	409
Eco147I	AGGCCT	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	1 cut(s)	413
FaiI	YATR	8 cut(s)	185, 291, 353, 383, 411, 429, 544, 546
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	1 cut(s)	409
FauNDI	CATATG	1 cut(s)	544
Fnu4HI	GCNGC	2 cut(s)	174, 279
FokI	GGATG	2 cut(s)	287, 475
Fsp4HI	GCNGC	2 cut(s)	174, 279
GluI	GCNGC	2 cut(s)	174, 279
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	2 cut(s)	125, 396
HapII	CCGG	1 cut(s)	447
Hin1II	CATG	1 cut(s)	413
HinfI	GANTC	1 cut(s)	297
HpaII	CCGG	1 cut(s)	447
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	2 cut(s)	462, 489
Hpy188III	TCNNGA	6 cut(s)	43, 57, 76, 304, 501, 586
Hpy8I	GTNNAC	1 cut(s)	260
HpyAV	CCTTC	5 cut(s)	14, 63, 386, 427, 520
HpyCH4III	ACNGT	2 cut(s)	94, 441
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	5 cut(s)	108, 131, 136, 212, 224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 146
HpyF3I	CTNAG	2 cut(s)	252, 324
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	1 cut(s)	413
Kzo9I	GATC	2 cut(s)	37, 115
LmnI	GCTCC	1 cut(s)	248
Lsp1109I	GCAGC	2 cut(s)	160, 290
LweI	GCATC	1 cut(s)	233
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	2 cut(s)	143, 365
MalI	GATC	2 cut(s)	39, 117
MboI	GATC	2 cut(s)	37, 115
MboII	GAAGA	2 cut(s)	214, 487
MflI	RGATCY	2 cut(s)	37, 115
MluCI	AATT	5 cut(s)	60, 97, 110, 272, 374
MnlI	CCTC	1 cut(s)	527
MspI	CCGG	1 cut(s)	447
MspR9I	CCNGG	2 cut(s)	398, 447
MvaI	CCWGG	1 cut(s)	398
MwoI	GCNNNNNNNGC	2 cut(s)	137, 146
NciI	CCSGG	1 cut(s)	447
NcoI	CCATGG	1 cut(s)	409
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	2 cut(s)	37, 115
NlaIII	CATG	1 cut(s)	413
NlaIV	GGNNCC	1 cut(s)	415
NmuCI	GTSAC	1 cut(s)	365
PceI	AGGCCT	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	297
PkrI	GCNGC	2 cut(s)	175, 280
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	1 cut(s)	415
PsuI	RGATCY	2 cut(s)	37, 115
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
SatI	GCNGC	2 cut(s)	174, 279
Sau3AI	GATC	2 cut(s)	37, 115
ScrFI	CCNGG	2 cut(s)	398, 447
SetI	ASST	6 cut(s)	142, 253, 325, 372, 531, 538
SfaNI	GCATC	1 cut(s)	233
SmlI	CTYRAG	3 cut(s)	41, 119, 421
SmoI	CTYRAG	3 cut(s)	41, 119, 421
Sse9I	AATT	5 cut(s)	60, 97, 110, 272, 374
SseBI	AGGCCT	1 cut(s)	396
SspI	AATATT	1 cut(s)	82
StuI	AGGCCT	1 cut(s)	396
StyD4I	CCNGG	2 cut(s)	396, 445
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	2 cut(s)	94, 441
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	1 cut(s)	295
TasI	AATT	5 cut(s)	60, 97, 110, 272, 374
TfiI	GAWTC	1 cut(s)	297
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	2 cut(s)	173, 278
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	3 cut(s)	444, 479, 561
TspRI	CASTG	1 cut(s)	138
XapI	RAATTY	1 cut(s)	374
XcmI	CCANNNNNNNNNTGG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.