Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000930

Physical Location & Seq

Genomic Coordinates Forward (+)

4379793 .. 4382224

Gene Structure 2432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G13445.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGACTGATCAAGGATTGGAAGGGAGTAATCCAGTTGATCTTAGCAAGCATCCTTCAGGGATTGTTCCTACTCTTCAAAACATTGTCTCCACGGTGAACTTAGACTGCAAGCTAGATCTTAAAGCCATAGCTTTGCAGGCTCGGAATGCTGAATATAATCCCAAGCGTTTTGCTGCGGTGATAATGAGGATCAGAGAACCGAAGACTACAGCATTAATATTCGCCTCAGGGAAAATGGTCTGTACTGGAGCTAAGAGCGAGGACTTTTCGAAGATGGCTGCTAGAAAGTATGCTAGGATTGTGCAGAAATTGGGATTCCCTGCAAAATTCAAGGATTTCAAGATTCAGAATATTGTAGGTTCTTGTGATGTCAAATTCCCTATAAGACTTGAAGGTCTTGCTTACTCTCACGCTGCTTTCTCAAGTTATGAGCCCGAGCTCTTCCCAGGGCTGATTTATAGGATGAAAGTCCCAAAAATCGTCCTTCTAATCTTTGTCTCTGGGAAGATCGTAATAACAGGAGCCAAGATGAGAGATGAGACCTACAAAGCCTTTGAGAATATATACCCCGTGCTCTCGGAATTCAGAAAGATACAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006352 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0017025 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203

Pfam Domains

Protein Families

TBP

Protein Analysis

200

Amino Acids

22.37

Weight (kDa)

9.66

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TBP	PF00352	23 - 104	3.6e-33	Transcription factor TFIID (or TATA-binding protein, TBP)
TBP	PF00352	112 - 184	1.2e-27	Transcription factor TFIID (or TATA-binding protein, TBP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55520 AT1G55520 AT1G55520 AT1G55520 AT3G13445 AT3G13445
fragaria_vesca	FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_3g32401 FvH4_3g32450 FvH4_3g45850 FvH4_3g45850 FvH4_4g21060 FvH4_6g12030
malus_domestica	MD03G1002100.v1.1 MD11G1002100.v1.1 MD12G1002700.v1.1 MD12G1176800.v1.1 MD14G1002000.v1.1
prunus_persica	Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.7G002800_v2.0.a1 Prupe.7G002800_v2.0.a1
pyrus_communis	pycom11g00190 pycom12g16680
rosa_chinensis	RchiOBHm_Chr3g0463861 RchiOBHm_Chr3g0497421 RchiOBHm_Chr5g0083961
rosa_laevigata	RLG00000022465 RLG00000024749 RLG00000035285 RLG00000037068
rosa_multiflora	Rmu_sc0004796.1_g000003
rosa_roxburghii	Rroxscaffold_1G00000660 Rroxscaffold_6G00388060 Rroxscaffold_6G00416240
rosa_rugosa	Rorug03G0068600 Rorug03G0292900 Rorug05G0488000 Rorug05G0488100
rosa_samantha	Rh3AG125700 Rh3AG336400 Rh3BG129800 Rh3BG374500 Rh3CG132300 Rh3CG370600 Rh3DG130900 Rh3DG371500 Rh3DG372800 Rh5AG540800 Rh5BG565800 Rh5CG587700 Rh5DG574400
rosa_wichuraiana	Rw3G010610 Rw3G029570 Rw5G050290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	393
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	3 cut(s)	326, 374, 581
AcuI	CTGAAG	1 cut(s)	39
AfaI	GTAC	1 cut(s)	244
AgsI	TTSAA	4 cut(s)	77, 331, 340, 392
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	4 cut(s)	112, 131, 251, 439
AluI	AGCT	4 cut(s)	112, 131, 251, 439
Alw21I	GWGCWC	2 cut(s)	441, 576
Alw26I	GTCTC	3 cut(s)	91, 502, 533
AlwI	GGATC	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	434
ApeKI	GCWGC	3 cut(s)	173, 278, 413
ApoI	RAATTY	3 cut(s)	326, 374, 581
AseI	ATTAAT	1 cut(s)	215
AsuHPI	GGTGA	2 cut(s)	106, 190
AsuII	TTCGAA	1 cut(s)	269
AvaI	CYCGRG	1 cut(s)	434
AxyI	CCTNAGG	1 cut(s)	226
BanII	GRGCYC	2 cut(s)	435, 441
BbsI	GAAGAC	1 cut(s)	209
Bbv12I	GWGCWC	2 cut(s)	441, 576
BbvI	GCAGC	3 cut(s)	160, 265, 400
BccI	CCATC	1 cut(s)	268
BciT130I	CCWGG	1 cut(s)	447
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	3 cut(s)	91, 502, 533
BfaI	CTAG	3 cut(s)	113, 282, 294
BfmI	CTRYAG	1 cut(s)	207
BglII	AGATCT	1 cut(s)	115
BisI	GCNGC	3 cut(s)	174, 279, 414
BlsI	GCNGC	3 cut(s)	175, 280, 415
Bme1390I	CCNGG	1 cut(s)	447
BmeT110I	CYCGRG	1 cut(s)	434
BmiI	GGNNCC	1 cut(s)	523
BmrFI	CCNGG	1 cut(s)	447
BmsI	GCATC	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	406
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	3 cut(s)	90, 445, 446
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bse1I	ACTGG	2 cut(s)	32, 250
Bse21I	CCTNAGG	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	3 cut(s)	90, 445, 446
BseGI	GGATG	2 cut(s)	49, 468
BseMII	CTCAG	1 cut(s)	240
BseNI	ACTGG	2 cut(s)	32, 250
BseXI	GCAGC	3 cut(s)	160, 265, 400
BsgI	GTGCAG	1 cut(s)	323
BsiHKAI	GWGCWC	2 cut(s)	441, 576
BsiHKCI	CYCGRG	1 cut(s)	434
BslFI	GGGAC	1 cut(s)	455
BsmAI	GTCTC	3 cut(s)	91, 502, 533
BsmFI	GGGAC	1 cut(s)	455
BsmI	GAATGC	1 cut(s)	151
Bso31I	GGTCTC	1 cut(s)	533
BsoBI	CYCGRG	1 cut(s)	434
Bsp119I	TTCGAA	1 cut(s)	269
Bsp1286I	GDGCHC	3 cut(s)	435, 441, 576
Bsp143I	GATC	5 cut(s)	7, 37, 115, 189, 507
BspACI	CCGC	1 cut(s)	176
BspCNI	CTCAG	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	523
BspPI	GGATC	1 cut(s)	197
BspQI	GCTCTTC	1 cut(s)	446
BspT104I	TTCGAA	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	533
BsrI	ACTGG	2 cut(s)	32, 250
BssECI	CCNNGG	3 cut(s)	90, 445, 446
BssMI	GATC	5 cut(s)	7, 37, 115, 189, 507
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	94
Bst6I	CTCTTC	2 cut(s)	78, 446
BstBI	TTCGAA	1 cut(s)	269
BstC8I	GCNNGC	3 cut(s)	47, 110, 138
BstDEI	CTNAG	4 cut(s)	41, 100, 226, 252
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	2 cut(s)	49, 468
BstKTI	GATC	5 cut(s)	10, 40, 118, 192, 510
BstMAI	GTCTC	3 cut(s)	91, 502, 533
BstMBI	GATC	5 cut(s)	7, 37, 115, 189, 507
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 146
BstNI	CCWGG	1 cut(s)	447
BstSCI	CCNGG	1 cut(s)	445
BstSFI	CTRYAG	1 cut(s)	207
BstV1I	GCAGC	3 cut(s)	160, 265, 400
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
Bsu36I	CCTNAGG	1 cut(s)	226
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	49, 468
Cac8I	GCNNGC	3 cut(s)	47, 110, 138
Csp6I	GTAC	1 cut(s)	243
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	4 cut(s)	41, 100, 226, 252
DpnI	GATC	5 cut(s)	9, 39, 117, 191, 509
DpnII	GATC	5 cut(s)	7, 37, 115, 189, 507
DrdI	GACNNNNNNGTC	1 cut(s)	393
DseDI	GACNNNNNNGTC	1 cut(s)	393
Eam1104I	CTCTTC	2 cut(s)	78, 446
EarI	CTCTTC	2 cut(s)	78, 446
Ecl136II	GAGCTC	1 cut(s)	439
Eco24I	GRGCYC	2 cut(s)	435, 441
Eco31I	GGTCTC	1 cut(s)	533
Eco53kI	GAGCTC	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	39
Eco81I	CCTNAGG	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	439
EcoRI	GAATTC	1 cut(s)	581
EcoRII	CCWGG	1 cut(s)	445
EcoT38I	GRGCYC	2 cut(s)	435, 441
FaiI	YATR	8 cut(s)	128, 156, 291, 383, 429, 459, 563, 565
FaqI	GGGAC	1 cut(s)	455
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	3 cut(s)	174, 279, 414
FokI	GGATG	2 cut(s)	36, 475
FriOI	GRGCYC	2 cut(s)	435, 441
Fsp4HI	GCNGC	3 cut(s)	174, 279, 414
FspBI	CTAG	3 cut(s)	113, 282, 294
GluI	GCNGC	3 cut(s)	174, 279, 414
GsuI	CTGGAG	1 cut(s)	267
HinfI	GANTC	2 cut(s)	315, 343
HphI	GGTGA	2 cut(s)	106, 190
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	5 cut(s)	144, 194, 348, 580, 587
Hpy188III	TCNNGA	1 cut(s)	340
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	4 cut(s)	14, 63, 386, 494
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	4 cut(s)	108, 136, 304, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 146
HpyF3I	CTNAG	4 cut(s)	41, 100, 226, 252
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	5 cut(s)	7, 37, 115, 189, 507
LguI	GCTCTTC	1 cut(s)	446
LmnI	GCTCC	2 cut(s)	248, 521
Lsp1109I	GCAGC	3 cut(s)	160, 265, 400
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	3 cut(s)	113, 282, 294
MalI	GATC	5 cut(s)	9, 39, 117, 191, 509
MboI	GATC	5 cut(s)	7, 37, 115, 189, 507
MboII	GAAGA	5 cut(s)	65, 214, 283, 433, 517
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	3 cut(s)	435, 441, 576
MluCI	AATT	4 cut(s)	308, 326, 374, 581
MnlI	CCTC	3 cut(s)	180, 235, 253
MseI	TTAA	2 cut(s)	120, 215
MspR9I	CCNGG	1 cut(s)	447
Mva1269I	GAATGC	1 cut(s)	151
MvaI	CCWGG	1 cut(s)	447
MwoI	GCNNNNNNNGC	2 cut(s)	137, 146
NdeII	GATC	5 cut(s)	7, 37, 115, 189, 507
NlaIV	GGNNCC	1 cut(s)	523
NspV	TTCGAA	1 cut(s)	269
PasI	CCCWGGG	1 cut(s)	446
PciSI	GCTCTTC	1 cut(s)	446
PctI	GAATGC	1 cut(s)	151
PfeI	GAWTC	2 cut(s)	315, 343
PkrI	GCNGC	3 cut(s)	175, 280, 415
PshBI	ATTAAT	1 cut(s)	215
Psp124BI	GAGCTC	1 cut(s)	441
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	115
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
SacI	GAGCTC	1 cut(s)	441
SapI	GCTCTTC	1 cut(s)	446
SaqAI	TTAA	2 cut(s)	120, 215
SatI	GCNGC	3 cut(s)	174, 279, 414
Sau3AI	GATC	5 cut(s)	7, 37, 115, 189, 507
ScrFI	CCNGG	1 cut(s)	447
SduI	GDGCHC	3 cut(s)	435, 441, 576
SetI	ASST	7 cut(s)	114, 133, 253, 361, 397, 441, 545
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	207
SfuI	TTCGAA	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
Sse9I	AATT	4 cut(s)	308, 326, 374, 581
SsiI	CCGC	1 cut(s)	176
SspI	AATATT	2 cut(s)	219, 352
SspMI	CTAG	3 cut(s)	113, 282, 294
SstI	GAGCTC	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	445
TaaI	ACNGT	1 cut(s)	94
TaqI	TCGA	1 cut(s)	269
TasI	AATT	4 cut(s)	308, 326, 374, 581
TatI	WGTACW	1 cut(s)	242
TfiI	GAWTC	2 cut(s)	315, 343
Tru1I	TTAA	2 cut(s)	120, 215
Tru9I	TTAA	2 cut(s)	120, 215
TseI	GCWGC	3 cut(s)	173, 278, 413
TspDTI	ATGAA	1 cut(s)	479
VspI	ATTAAT	1 cut(s)	215
XapI	RAATTY	3 cut(s)	326, 374, 581
XspI	CTAG	3 cut(s)	113, 282, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.