Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000930

Physical Location & Seq

Genomic Coordinates Forward (+)

196317 .. 199315

Gene Structure 2999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1002100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCAGAAGAAGGAAGCCATCCAGTAGTAGTAGATCTGAGCAAGCACCCTTCTGGGATTGTCCCTACTCTCCAGAATATTGTCTCCACTGTCAATCTGGATTGCAAATTGGATCTTAAAGCCATTGCATTGAAAGCTCGTAATTCTGAATACAACCCAAAGCGTTTTGCAGCTGTGATCATGAGAATAAGAGAGCCGAAGACCACTGCCTTGATATTTGCATCCGGTAAAATGGTTTGTACGGGAGCTAAGAGTGAAGAACAATCGAGATTGGCAGCACGAAAGTATGCTCGTGTCATCCAGAAACTCGGTTTTCCAGCTAAGTTCAAAGATTTCAAAATCCAAAATATAGTTGGTTCTTGTGATGTAAAATTCCCCATAAGACTTGAAGCCTTGGTAGTATCCCATTGTGCTTTCTCCAGCTATGAACCAGAAATTTTTCCAGGCTTGATATATCGAATGAAACAACCGAAGATTGTGCTCCTCATCTTTGTGTCCGGAAAAATTGTCCTGACAGGAGCGAAGGCAAGAACCGAGACGTATGAAGCCTTTGAGAACATTTACCCAGTTCTTACAGGATTCAGGAAAAATCAGCATTGGTATGAAACTGTTTCTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203

Pfam Domains

Protein Families

TBP

Protein Analysis

207

Amino Acids

23.04

Weight (kDa)

9.63

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TBP	PF00352	22 - 103	7.2e-34	Transcription factor TFIID (or TATA-binding protein, TBP)
TBP	PF00352	111 - 192	8.4e-32	Transcription factor TFIID (or TATA-binding protein, TBP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55520 AT1G55520 AT1G55520 AT1G55520 AT3G13445 AT3G13445
fragaria_vesca	FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_3g32401 FvH4_3g32450 FvH4_3g45850 FvH4_3g45850 FvH4_4g21060 FvH4_6g12030
malus_domestica	MD03G1002100.v1.1 MD11G1002100.v1.1 MD12G1002700.v1.1 MD12G1176800.v1.1 MD14G1002000.v1.1
prunus_persica	Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.7G002800_v2.0.a1 Prupe.7G002800_v2.0.a1
pyrus_communis	pycom11g00190 pycom12g16680
rosa_chinensis	RchiOBHm_Chr3g0463861 RchiOBHm_Chr3g0497421 RchiOBHm_Chr5g0083961
rosa_laevigata	RLG00000022465 RLG00000024749 RLG00000035285 RLG00000037068
rosa_multiflora	Rmu_sc0004796.1_g000003
rosa_roxburghii	Rroxscaffold_1G00000660 Rroxscaffold_6G00388060 Rroxscaffold_6G00416240
rosa_rugosa	Rorug03G0068600 Rorug03G0292900 Rorug05G0488000 Rorug05G0488100
rosa_samantha	Rh3AG125700 Rh3AG336400 Rh3BG129800 Rh3BG374500 Rh3CG132300 Rh3CG370600 Rh3DG130900 Rh3DG371500 Rh3DG372800 Rh5AG540800 Rh5BG565800 Rh5CG587700 Rh5DG574400
rosa_wichuraiana	Rw3G010610 Rw3G029570 Rw5G050290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	497
AclWI	GGATC	1 cut(s)	120
AcsI	RAATTY	2 cut(s)	371, 435
AfaI	GTAC	1 cut(s)	241
AgsI	TTSAA	4 cut(s)	133, 328, 337, 389
AjnI	CCWGG	1 cut(s)	442
AluBI	AGCT	5 cut(s)	137, 173, 248, 320, 423
AluI	AGCT	5 cut(s)	137, 173, 248, 320, 423
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	2 cut(s)	88, 530
AlwI	GGATC	1 cut(s)	120
Aor13HI	TCCGGA	1 cut(s)	497
ApeKI	GCWGC	2 cut(s)	170, 275
ApoI	RAATTY	2 cut(s)	371, 435
Asp700I	GAANNNNTTC	1 cut(s)	438
BauI	CACGAG	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	2 cut(s)	182, 287
BccI	CCATC	1 cut(s)	27
BcgI	CGANNNNNNTGC	2 cut(s)	460, 494
BciT130I	CCWGG	1 cut(s)	444
BciVI	GTATCC	1 cut(s)	412
BclI	TGATCA	1 cut(s)	177
BcoDI	GTCTC	2 cut(s)	88, 530
BfuI	GTATCC	1 cut(s)	412
BglII	AGATCT	1 cut(s)	34
BisI	GCNGC	2 cut(s)	171, 276
BlsI	GCNGC	2 cut(s)	172, 277
Bme1390I	CCNGG	1 cut(s)	444
BmrFI	CCNGG	1 cut(s)	444
BmrI	ACTGGG	1 cut(s)	560
BmsI	GCATC	1 cut(s)	230
BmuI	ACTGGG	1 cut(s)	560
BpiI	GAAGAC	1 cut(s)	206
BpmI	CTGGAG	2 cut(s)	56, 403
BsaJI	CCNNGG	1 cut(s)	393
BsaWI	WCCGGW	2 cut(s)	224, 497
Bse1I	ACTGG	2 cut(s)	23, 566
Bse3DI	GCAATG	1 cut(s)	123
BseAI	TCCGGA	1 cut(s)	497
BseBI	CCWGG	1 cut(s)	444
BseDI	CCNNGG	1 cut(s)	393
BseGI	GGATG	3 cut(s)	19, 221, 297
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	2 cut(s)	23, 566
BseRI	GAGGAG	1 cut(s)	473
BseXI	GCAGC	2 cut(s)	182, 287
BsiHKAI	GWGCWC	1 cut(s)	483
BsiSI	CCGG	2 cut(s)	225, 498
BslFI	GGGAC	1 cut(s)	47
BsmAI	GTCTC	2 cut(s)	88, 530
BsmBI	CGTCTC	1 cut(s)	530
BsmFI	GGGAC	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp13I	TCCGGA	1 cut(s)	497
Bsp143I	GATC	3 cut(s)	34, 112, 177
BspCNI	CTCAG	1 cut(s)	30
BspEI	TCCGGA	1 cut(s)	497
BspHI	TCATGA	1 cut(s)	180
BspPI	GGATC	1 cut(s)	120
BsrDI	GCAATG	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	23, 566
BssECI	CCNNGG	1 cut(s)	393
BssMI	GATC	3 cut(s)	34, 112, 177
BssSI	CACGAG	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	393
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	2 cut(s)	91, 610
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	3 cut(s)	38, 249, 321
BstF5I	GGATG	3 cut(s)	19, 221, 297
BstKTI	GATC	3 cut(s)	37, 115, 180
BstMAI	GTCTC	2 cut(s)	88, 530
BstMBI	GATC	3 cut(s)	34, 112, 177
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	444
BstSCI	CCNGG	1 cut(s)	442
BstV1I	GCAGC	2 cut(s)	182, 287
BstV2I	GAAGAC	1 cut(s)	206
BstX2I	RGATCY	2 cut(s)	34, 112
BstYI	RGATCY	2 cut(s)	34, 112
BsuI	GTATCC	1 cut(s)	412
BtsCI	GGATG	3 cut(s)	19, 221, 297
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	2 cut(s)	87, 204
Cac8I	GCNNGC	1 cut(s)	44
CciI	TCATGA	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	1 cut(s)	181
CviQI	GTAC	1 cut(s)	240
DdeI	CTNAG	3 cut(s)	38, 249, 321
DpnI	GATC	3 cut(s)	36, 114, 179
DpnII	GATC	3 cut(s)	34, 112, 177
Eco130I	CCWWGG	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	393
Esp3I	CGTCTC	1 cut(s)	530
FaeI	CATG	1 cut(s)	184
FaiI	YATR	8 cut(s)	182, 288, 350, 380, 426, 454, 543, 603
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	1 cut(s)	180
FbaI	TGATCA	1 cut(s)	177
Fnu4HI	GCNGC	2 cut(s)	171, 276
FokI	GGATG	3 cut(s)	6, 208, 284
Fsp4HI	GCNGC	2 cut(s)	171, 276
GluI	GCNGC	2 cut(s)	171, 276
GsuI	CTGGAG	2 cut(s)	56, 403
HapII	CCGG	2 cut(s)	225, 498
Hin1II	CATG	1 cut(s)	184
HinfI	GANTC	1 cut(s)	579
HpaII	CCGG	2 cut(s)	225, 498
Hpy188I	TCNGA	2 cut(s)	39, 148
Hpy188III	TCNNGA	8 cut(s)	73, 98, 181, 267, 301, 498, 511, 583
HpyAV	CCTTC	3 cut(s)	5, 60, 517
HpyCH4III	ACNGT	2 cut(s)	91, 610
HpyCH4IV	ACGT	1 cut(s)	539
HpyCH4V	TGCA	4 cut(s)	105, 128, 170, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	3 cut(s)	38, 249, 321
HpySE526I	ACGT	1 cut(s)	539
Hsp92II	CATG	1 cut(s)	184
Kpn2I	TCCGGA	1 cut(s)	497
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	3 cut(s)	34, 112, 177
LmnI	GCTCC	3 cut(s)	245, 486, 518
Lsp1109I	GCAGC	2 cut(s)	182, 287
LweI	GCATC	1 cut(s)	230
MaeII	ACGT	1 cut(s)	539
MalI	GATC	3 cut(s)	36, 114, 179
MboI	GATC	3 cut(s)	34, 112, 177
MboII	GAAGA	4 cut(s)	20, 211, 269, 484
MflI	RGATCY	2 cut(s)	34, 112
MhlI	GDGCHC	1 cut(s)	483
MluCI	AATT	5 cut(s)	107, 142, 371, 435, 504
MnlI	CCTC	1 cut(s)	494
MroI	TCCGGA	1 cut(s)	497
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	1 cut(s)	117
MslI	CAYNNNNRTG	2 cut(s)	491, 600
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	2 cut(s)	225, 498
MspR9I	CCNGG	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	444
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	3 cut(s)	34, 112, 177
NlaIII	CATG	1 cut(s)	184
PagI	TCATGA	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	579
PkrI	GCNGC	2 cut(s)	172, 277
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PsuI	RGATCY	2 cut(s)	34, 112
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
RseI	CAYNNNNRTG	2 cut(s)	491, 600
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	2 cut(s)	171, 276
Sau3AI	GATC	3 cut(s)	34, 112, 177
ScrFI	CCNGG	1 cut(s)	444
SduI	GDGCHC	1 cut(s)	483
SetI	ASST	6 cut(s)	139, 175, 250, 322, 425, 542
SfaNI	GCATC	1 cut(s)	230
SmiMI	CAYNNNNRTG	2 cut(s)	491, 600
Sse9I	AATT	5 cut(s)	107, 142, 371, 435, 504
SspI	AATATT	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	442
StyI	CCWWGG	1 cut(s)	393
TaaI	ACNGT	2 cut(s)	91, 610
TaiI	ACGT	1 cut(s)	542
TaqI	TCGA	2 cut(s)	266, 457
TasI	AATT	5 cut(s)	107, 142, 371, 435, 504
TfiI	GAWTC	1 cut(s)	579
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	2 cut(s)	94, 211
TseI	GCWGC	2 cut(s)	170, 275
TspDTI	ATGAA	4 cut(s)	441, 476, 558, 618
TspRI	CASTG	2 cut(s)	94, 211
XapI	RAATTY	2 cut(s)	371, 435
XcmI	CCANNNNNNNNNTGG	2 cut(s)	94, 350
XmnI	GAANNNNTTC	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.