Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000930

Physical Location & Seq

Genomic Coordinates Forward (+)

27697341 .. 27697769

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g32401.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGTGTGCACTGGTGCCAAAAGCGAAGGTGAGTCGAAACTCGCAGCTAGGAAGTGTGTACGAACCATCCTGAAGATGGGTTTCGACGCCAAGTTTAAGGATTTCAAGATCCAGAACATGGTTGCCAACAGTGATGTCAGATTTCCGATCAAACTTGAAGGCTTGGCTTATGCGAACCCGCAGTGTACGACTTATGAGCCGGAACTTTTTCCAGGCTTAAGGTACCGCTTGAAGGAACCCAAGATTACTCTTCTTGTATTCGCGTCGGGGAATCTAGTCGTCACAGGTGCAAAGCGCAGAGAAGACATCCATAAGGCCTTTGAGGTCATATACCCTGCCCTTGGAGAGTTTAAGAAAGTATGTTATAGCAGTGTTAAAGGAAGAAAATATGTTGCTGATATATTGCTGATTCGTTGCTGGCGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203

Pfam Domains

Protein Families

TBP

Protein Analysis

143

Amino Acids

16.13

Weight (kDa)

9.58

Isoelectric Point (pI)

31.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TBP	PF00352	34 - 116	9.8e-30	Transcription factor TFIID (or TATA-binding protein, TBP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55520 AT1G55520 AT1G55520 AT1G55520 AT3G13445 AT3G13445
fragaria_vesca	FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_3g32401 FvH4_3g32450 FvH4_3g45850 FvH4_3g45850 FvH4_4g21060 FvH4_6g12030
malus_domestica	MD03G1002100.v1.1 MD11G1002100.v1.1 MD12G1002700.v1.1 MD12G1176800.v1.1 MD14G1002000.v1.1
prunus_persica	Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.7G002800_v2.0.a1 Prupe.7G002800_v2.0.a1
pyrus_communis	pycom11g00190 pycom12g16680
rosa_chinensis	RchiOBHm_Chr3g0463861 RchiOBHm_Chr3g0497421 RchiOBHm_Chr5g0083961
rosa_laevigata	RLG00000022465 RLG00000024749 RLG00000035285 RLG00000037068
rosa_multiflora	Rmu_sc0004796.1_g000003
rosa_roxburghii	Rroxscaffold_1G00000660 Rroxscaffold_6G00388060 Rroxscaffold_6G00416240
rosa_rugosa	Rorug03G0068600 Rorug03G0292900 Rorug05G0488000 Rorug05G0488100
rosa_samantha	Rh3AG125700 Rh3AG336400 Rh3BG129800 Rh3BG374500 Rh3CG132300 Rh3CG370600 Rh3DG130900 Rh3DG371500 Rh3DG372800 Rh5AG540800 Rh5BG565800 Rh5CG587700 Rh5DG574400
rosa_wichuraiana	Rw3G010610 Rw3G029570 Rw5G050290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	222
AccB1I	GGYRCC	2 cut(s)	14, 222
AccB7I	CCANNNNNTGG	1 cut(s)	118
AccII	CGCG	1 cut(s)	263
AciI	CCGC	2 cut(s)	179, 226
AclWI	GGATC	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	92
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	3 cut(s)	60, 187, 224
AfiI	CCNNNNNNNGG	4 cut(s)	76, 118, 232, 341
AflII	CTTAAG	1 cut(s)	217
AgsI	TTSAA	3 cut(s)	106, 158, 232
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
Alw21I	GWGCWC	1 cut(s)	11
Alw44I	GTGCAC	1 cut(s)	7
AlwI	GGATC	1 cut(s)	103
AoxI	GGCC	1 cut(s)	315
ApaLI	GTGCAC	1 cut(s)	7
ApeKI	GCWGC	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	207
Asp718I	GGTACC	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	41
BaeGI	GKGCMC	1 cut(s)	11
BanI	GGYRCC	2 cut(s)	14, 222
BbsI	GAAGAC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	2 cut(s)	70, 74
BciT130I	CCWGG	1 cut(s)	213
BfaI	CTAG	2 cut(s)	48, 275
BfrI	CTTAAG	1 cut(s)	217
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	213
BmiI	GGNNCC	3 cut(s)	16, 224, 237
BmrFI	CCNGG	1 cut(s)	213
BpiI	GAAGAC	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 118, 232, 341
Bse1I	ACTGG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	2 cut(s)	66, 306
BseLI	CCNNNNNNNGG	4 cut(s)	76, 118, 232, 341
BseNI	ACTGG	1 cut(s)	16
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	56
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	1 cut(s)	317
BshNI	GGYRCC	2 cut(s)	14, 222
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	4 cut(s)	76, 118, 232, 341
BsnI	GGCC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	108, 147
BspACI	CCGC	2 cut(s)	179, 226
BspANI	GGCC	1 cut(s)	317
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	3 cut(s)	16, 224, 237
BspPI	GGATC	1 cut(s)	103
BspT107I	GGYRCC	2 cut(s)	14, 222
BspTI	CTTAAG	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	2 cut(s)	108, 147
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	340
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	255
BstACI	GRCGYC	1 cut(s)	87
BstAFI	CTTAAG	1 cut(s)	217
BstC8I	GCNNGC	1 cut(s)	419
BstF5I	GGATG	2 cut(s)	66, 306
BstFNI	CGCG	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	2 cut(s)	111, 150
BstMBI	GATC	2 cut(s)	108, 147
BstNI	CCWGG	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	211
BstSLI	GKGCMC	1 cut(s)	11
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	56
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	317
BtsCI	GGATG	2 cut(s)	66, 306
BtsI	GCAGTG	2 cut(s)	188, 376
BtsIMutI	CAGTG	4 cut(s)	9, 136, 188, 376
Cac8I	GCNNGC	1 cut(s)	419
CfoI	GCGC	1 cut(s)	297
CseI	GACGC	2 cut(s)	95, 252
Csp6I	GTAC	3 cut(s)	59, 186, 223
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	6 cut(s)	47, 162, 167, 199, 216, 317
CviKI_1	RGCY	6 cut(s)	47, 162, 167, 199, 216, 317
CviQI	GTAC	3 cut(s)	59, 186, 223
DpnI	GATC	2 cut(s)	110, 149
DpnII	GATC	2 cut(s)	108, 147
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	340
Eco147I	AGGCCT	1 cut(s)	317
Eco57I	CTGAAG	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	1 cut(s)	121
FatI	CATG	1 cut(s)	117
FauI	CCCGC	1 cut(s)	186
Fnu4HI	GCNGC	1 cut(s)	45
FokI	GGATG	2 cut(s)	53, 293
Fsp4HI	GCNGC	1 cut(s)	45
FspBI	CTAG	2 cut(s)	48, 275
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	317
HapII	CCGG	1 cut(s)	200
HgaI	GACGC	2 cut(s)	95, 252
HhaI	GCGC	1 cut(s)	297
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	1 cut(s)	121
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HinfI	GANTC	3 cut(s)	32, 271, 409
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	3 cut(s)	9, 59, 186
Hpy188I	TCNGA	2 cut(s)	140, 147
Hpy188III	TCNNGA	3 cut(s)	70, 106, 112
Hpy8I	GTNNAC	3 cut(s)	9, 59, 186
Hpy99I	CGWCG	2 cut(s)	89, 268
HpyAV	CCTTC	3 cut(s)	20, 152, 226
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	2 cut(s)	9, 290
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	121
HspAI	GCGC	1 cut(s)	295
KpnI	GGTACC	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	108, 147
LpnPI	CCDG	8 cut(s)	83, 125, 198, 213, 225, 270, 348, 403
Lsp1109I	GCAGC	1 cut(s)	56
MaeI	CTAG	2 cut(s)	48, 275
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	2 cut(s)	110, 149
MboI	GATC	2 cut(s)	108, 147
MboII	GAAGA	4 cut(s)	85, 242, 314, 393
MflI	RGATCY	1 cut(s)	108
MhlI	GDGCHC	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	4 cut(s)	96, 218, 351, 375
MspCI	CTTAAG	1 cut(s)	217
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
MvnI	CGCG	1 cut(s)	263
NdeII	GATC	2 cut(s)	108, 147
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	3 cut(s)	16, 224, 237
NmuCI	GTSAC	1 cut(s)	280
PceI	AGGCCT	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	418
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	2 cut(s)	271, 409
PflMI	CCANNNNNTGG	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	46
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	3 cut(s)	16, 224, 237
PsuI	RGATCY	1 cut(s)	108
RsaI	GTAC	3 cut(s)	60, 187, 224
RsaNI	GTAC	3 cut(s)	59, 186, 223
SaqAI	TTAA	4 cut(s)	96, 218, 351, 375
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	2 cut(s)	108, 147
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	5 cut(s)	31, 49, 224, 289, 327
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
SseBI	AGGCCT	1 cut(s)	317
SsiI	CCGC	2 cut(s)	179, 226
SspMI	CTAG	2 cut(s)	48, 275
StuI	AGGCCT	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	1 cut(s)	131
TaqI	TCGA	2 cut(s)	35, 84
TfiI	GAWTC	2 cut(s)	271, 409
Tru1I	TTAA	4 cut(s)	96, 218, 351, 375
Tru9I	TTAA	4 cut(s)	96, 218, 351, 375
TscAI	CASTG	4 cut(s)	16, 136, 188, 376
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	1 cut(s)	280
TspRI	CASTG	4 cut(s)	16, 136, 188, 376
Van91I	CCANNNNNTGG	1 cut(s)	118
Vha464I	CTTAAG	1 cut(s)	217
VneI	GTGCAC	1 cut(s)	7
XcmI	CCANNNNNNNNNTGG	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	2 cut(s)	48, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.