Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000930

Physical Location & Seq

Genomic Coordinates Forward (+)

148043 .. 150753

Gene Structure 2711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1002100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAGGCGCAAGGTTTCAATCAATACCGAGTCAATAAAACAAAGGGAGTGTCAGAAGAAGGAAGCCATCCAGTAGTAGACCTGAGCAAGCACCCTTCTGGAATTGTCCCTACTCTCCAGAATATTGTCTCCACAGTCAATCTGGATTGCAAATTGGATCTTAAAGCCATTGCATTGAAAGCTCGTAATTCTGAATACAACCCAAAGGCATGTGATGTTTTGAGCATAGCTTCTCCCGCTCCCTTTCTCCTCTATTTTTCTACCTTTCTTTTGTTTAAGAGCTATAATGTTTTTTCTACTGTGGATCCAAGCCTTCGTTTAACAAATGGATCGCAATTCAGTTCCAATTTTATATATTTAGATGCTAGAGTTGCTACAACACCCATTTATGCATACAAAAATAGGTTTTCCTTGTTCAAAGTCATCTTTATATTGCATACTAATTATTTTGTACCCTTGCAGCGCTTTGCAGCTGTGATTATGAGAATAAGAGAGCCGAAGACCACTGCTTTGATATTTGCATCTGGTAAAATGGTTTGTACGGGAGCTAAGAGTGAAGAGCAATCGAGATTGGCAGCACGAAAGTATGCTCGAGTCATCCAGAAACTCGGTTTTCCAGCCAAGTTCCAAGATTTCAAAATCCAGAATATAGTTGGTTCTTGTGACGTAAAATTCCCCATAAGACTTGAAGGCTTGCATGTATCATCCCATGGTGTTTTCTCCACTTATGAACCAGAAATTTTTCCAGGCTTGATATATCGAATGAAACAACCGAAGATTGTGCTTCTCATCTTTGTGTCTGGAAAAATTGTCCCAACAGGAGCGAAGGCAAGAATCGAGACGTATGAAGCCTTTGAGAACATTTACCCAGTTCTTACAGGATTCAGGAAAAATCAGCATTGGTATGAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203

Pfam Domains

Protein Families

TBP

Protein Analysis

305

Amino Acids

34.36

Weight (kDa)

9.66

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TBP	PF00352	37 - 74	5.2e-08	Transcription factor TFIID (or TATA-binding protein, TBP)
TBP	PF00352	154 - 203	1.7e-18	Transcription factor TFIID (or TATA-binding protein, TBP)
TBP	PF00352	211 - 293	3.2e-30	Transcription factor TFIID (or TATA-binding protein, TBP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55520 AT1G55520 AT1G55520 AT1G55520 AT3G13445 AT3G13445
fragaria_vesca	FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_3g32401 FvH4_3g32450 FvH4_3g45850 FvH4_3g45850 FvH4_4g21060 FvH4_6g12030
malus_domestica	MD03G1002100.v1.1 MD11G1002100.v1.1 MD12G1002700.v1.1 MD12G1176800.v1.1 MD14G1002000.v1.1
prunus_persica	Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.7G002800_v2.0.a1 Prupe.7G002800_v2.0.a1
pyrus_communis	pycom11g00190 pycom12g16680
rosa_chinensis	RchiOBHm_Chr3g0463861 RchiOBHm_Chr3g0497421 RchiOBHm_Chr5g0083961
rosa_laevigata	RLG00000022465 RLG00000024749 RLG00000035285 RLG00000037068
rosa_multiflora	Rmu_sc0004796.1_g000003
rosa_roxburghii	Rroxscaffold_1G00000660 Rroxscaffold_6G00388060 Rroxscaffold_6G00416240
rosa_rugosa	Rorug03G0068600 Rorug03G0292900 Rorug05G0488000 Rorug05G0488100
rosa_samantha	Rh3AG125700 Rh3AG336400 Rh3BG129800 Rh3BG374500 Rh3CG132300 Rh3CG370600 Rh3DG130900 Rh3DG371500 Rh3DG372800 Rh5AG540800 Rh5BG565800 Rh5CG587700 Rh5DG574400
rosa_wichuraiana	Rw3G010610 Rw3G029570 Rw5G050290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	78
AciI	CCGC	1 cut(s)	237
AclWI	GGATC	4 cut(s)	165, 299, 312, 337
AcsI	RAATTY	2 cut(s)	671, 738
AfaI	GTAC	2 cut(s)	453, 541
AfeI	AGCGCT	1 cut(s)	464
AgsI	TTSAA	5 cut(s)	19, 178, 418, 637, 689
AjnI	CCWGG	1 cut(s)	745
AluBI	AGCT	5 cut(s)	182, 230, 282, 473, 548
AluI	AGCT	5 cut(s)	182, 230, 282, 473, 548
Alw26I	GTCTC	2 cut(s)	133, 833
AlwI	GGATC	4 cut(s)	165, 299, 312, 337
Ama87I	CYCGRG	1 cut(s)	591
Aor51HI	AGCGCT	1 cut(s)	464
ApeKI	GCWGC	3 cut(s)	460, 470, 575
ApoI	RAATTY	2 cut(s)	671, 738
ArsI	GACNNNNNNTTYG	4 cut(s)	35, 67, 493, 525
Asp700I	GAANNNNTTC	1 cut(s)	741
AspLEI	GCGC	2 cut(s)	10, 465
AvaI	CYCGRG	1 cut(s)	591
BamHI	GGATCC	1 cut(s)	304
BbsI	GAAGAC	1 cut(s)	506
BbvI	GCAGC	3 cut(s)	472, 482, 587
BccI	CCATC	1 cut(s)	75
BcgI	CGANNNNNNTGC	2 cut(s)	763, 797
BciT130I	CCWGG	1 cut(s)	747
BcoDI	GTCTC	2 cut(s)	133, 833
BfaI	CTAG	1 cut(s)	366
BfoI	RGCGCY	1 cut(s)	466
BisI	GCNGC	3 cut(s)	461, 471, 576
BlsI	GCNGC	3 cut(s)	462, 472, 577
Bme1390I	CCNGG	1 cut(s)	747
BmeT110I	CYCGRG	1 cut(s)	591
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	747
BmrI	ACTGGG	1 cut(s)	863
BmsI	GCATC	2 cut(s)	352, 530
BmuI	ACTGGG	1 cut(s)	863
BpiI	GAAGAC	1 cut(s)	506
BpmI	CTGGAG	1 cut(s)	101
Bpu10I	CCTNAGC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	709
Bse1I	ACTGG	2 cut(s)	71, 869
Bse3DI	GCAATG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	747
BseDI	CCNNGG	1 cut(s)	709
BseGI	GGATG	3 cut(s)	67, 597, 704
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	2 cut(s)	71, 869
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	3 cut(s)	472, 482, 587
BsiHKCI	CYCGRG	1 cut(s)	591
BslFI	GGGAC	2 cut(s)	92, 797
BsmAI	GTCTC	2 cut(s)	133, 833
BsmBI	CGTCTC	1 cut(s)	833
BsmFI	GGGAC	2 cut(s)	92, 797
BsoBI	CYCGRG	1 cut(s)	591
Bsp143I	GATC	3 cut(s)	157, 304, 329
Bsp19I	CCATGG	1 cut(s)	709
BspACI	CCGC	1 cut(s)	237
BspCNI	CTCAG	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	4 cut(s)	165, 299, 312, 337
BspQI	GCTCTTC	1 cut(s)	552
BsrBI	CCGCTC	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	71, 869
BssECI	CCNNGG	1 cut(s)	709
BssMI	GATC	3 cut(s)	157, 304, 329
BssT1I	CCWWGG	1 cut(s)	709
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	2 cut(s)	136, 301
Bst6I	CTCTTC	1 cut(s)	552
BstC8I	GCNNGC	2 cut(s)	89, 695
BstDEI	CTNAG	2 cut(s)	83, 549
BstDSI	CCRYGG	1 cut(s)	709
BstF5I	GGATG	3 cut(s)	67, 597, 704
BstH2I	RGCGCY	1 cut(s)	466
BstHHI	GCGC	2 cut(s)	10, 465
BstKTI	GATC	3 cut(s)	160, 307, 332
BstMAI	GTCTC	2 cut(s)	133, 833
BstMBI	GATC	3 cut(s)	157, 304, 329
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 236, 371
BstNI	CCWGG	1 cut(s)	747
BstNSI	RCATGY	2 cut(s)	213, 701
BstSCI	CCNGG	1 cut(s)	745
BstV1I	GCAGC	3 cut(s)	472, 482, 587
BstV2I	GAAGAC	1 cut(s)	506
BstX2I	RGATCY	2 cut(s)	157, 304
BstYI	RGATCY	2 cut(s)	157, 304
BtgI	CCRYGG	1 cut(s)	709
BtsCI	GGATG	3 cut(s)	67, 597, 704
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	2 cut(s)	89, 695
CfoI	GCGC	2 cut(s)	10, 465
Csp6I	GTAC	2 cut(s)	452, 540
CviAII	CATG	3 cut(s)	210, 698, 710
CviQI	GTAC	2 cut(s)	452, 540
DdeI	CTNAG	2 cut(s)	83, 549
DpnI	GATC	3 cut(s)	159, 306, 331
DpnII	GATC	3 cut(s)	157, 304, 329
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	709
Eco47III	AGCGCT	1 cut(s)	464
Eco88I	CYCGRG	1 cut(s)	591
EcoRII	CCWGG	1 cut(s)	745
EcoT14I	CCWWGG	1 cut(s)	709
EcoT22I	ATGCAT	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	709
Esp3I	CGTCTC	1 cut(s)	833
FaeI	CATG	3 cut(s)	213, 701, 713
FaqI	GGGAC	2 cut(s)	92, 797
FatI	CATG	3 cut(s)	209, 697, 709
FauI	CCCGC	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	3 cut(s)	461, 471, 576
FokI	GGATG	3 cut(s)	54, 584, 691
Fsp4HI	GCNGC	3 cut(s)	461, 471, 576
FspBI	CTAG	1 cut(s)	366
GlaI	GCGC	2 cut(s)	9, 464
GluI	GCNGC	3 cut(s)	461, 471, 576
GsuI	CTGGAG	1 cut(s)	101
HaeII	RGCGCY	1 cut(s)	466
HhaI	GCGC	2 cut(s)	10, 465
Hin1II	CATG	3 cut(s)	213, 701, 713
Hin6I	GCGC	2 cut(s)	8, 463
HinP1I	GCGC	2 cut(s)	8, 463
HinfI	GANTC	4 cut(s)	30, 594, 834, 882
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	2 cut(s)	55, 193
Hpy188III	TCNNGA	9 cut(s)	99, 118, 143, 567, 601, 643, 801, 838, 886
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	5 cut(s)	53, 105, 323, 683, 820
HpyCH4III	ACNGT	2 cut(s)	136, 301
HpyCH4IV	ACGT	2 cut(s)	666, 842
HpyCH4V	TGCA	8 cut(s)	150, 173, 392, 436, 460, 470, 521, 697
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 236, 371
HpyF3I	CTNAG	2 cut(s)	83, 549
HpySE526I	ACGT	2 cut(s)	666, 842
Hsp92II	CATG	3 cut(s)	213, 701, 713
HspAI	GCGC	2 cut(s)	8, 463
Kzo9I	GATC	3 cut(s)	157, 304, 329
LguI	GCTCTTC	1 cut(s)	552
LmnI	GCTCC	3 cut(s)	244, 545, 821
Lsp1109I	GCAGC	3 cut(s)	472, 482, 587
LweI	GCATC	2 cut(s)	352, 530
MaeI	CTAG	1 cut(s)	366
MaeII	ACGT	2 cut(s)	666, 842
MaeIII	GTNAC	1 cut(s)	662
MalI	GATC	3 cut(s)	159, 306, 331
MbiI	CCGCTC	1 cut(s)	239
MboI	GATC	3 cut(s)	157, 304, 329
MboII	GAAGA	4 cut(s)	68, 511, 569, 787
MflI	RGATCY	2 cut(s)	157, 304
MluCI	AATT	9 cut(s)	102, 152, 187, 335, 346, 442, 671, 738, 807
MlyI	GAGTC	2 cut(s)	39, 603
MnlI	CCTC	1 cut(s)	260
Mph1103I	ATGCAT	1 cut(s)	394
MroXI	GAANNNNTTC	1 cut(s)	741
MseI	TTAA	4 cut(s)	162, 276, 320, 913
MslI	CAYNNNNRTG	2 cut(s)	794, 903
MspA1I	CMGCKG	1 cut(s)	473
MspR9I	CCNGG	1 cut(s)	747
MvaI	CCWGG	1 cut(s)	747
MwoI	GCNNNNNNNGC	3 cut(s)	179, 236, 371
NcoI	CCATGG	1 cut(s)	709
NdeII	GATC	3 cut(s)	157, 304, 329
NlaIII	CATG	3 cut(s)	213, 701, 713
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	662
NsiI	ATGCAT	1 cut(s)	394
NspI	RCATGY	2 cut(s)	213, 701
PaeR7I	CTCGAG	1 cut(s)	591
PciSI	GCTCTTC	1 cut(s)	552
PdmI	GAANNNNTTC	1 cut(s)	741
PfeI	GAWTC	2 cut(s)	834, 882
PkrI	GCNGC	3 cut(s)	462, 472, 577
PleI	GAGTC	2 cut(s)	38, 602
PpsI	GAGTC	2 cut(s)	38, 602
Psp6I	CCWGG	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	745
PspN4I	GGNNCC	1 cut(s)	306
PspXI	VCTCGAGB	1 cut(s)	591
PsuI	RGATCY	2 cut(s)	157, 304
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	2 cut(s)	453, 541
RsaNI	GTAC	2 cut(s)	452, 540
RseI	CAYNNNNRTG	2 cut(s)	794, 903
SapI	GCTCTTC	1 cut(s)	552
SaqAI	TTAA	4 cut(s)	162, 276, 320, 913
SatI	GCNGC	3 cut(s)	461, 471, 576
Sau3AI	GATC	3 cut(s)	157, 304, 329
SchI	GAGTC	2 cut(s)	39, 603
ScrFI	CCNGG	1 cut(s)	747
SfaNI	GCATC	2 cut(s)	352, 530
Sfr274I	CTCGAG	1 cut(s)	591
SlaI	CTCGAG	1 cut(s)	591
SmiMI	CAYNNNNRTG	2 cut(s)	794, 903
SmlI	CTYRAG	1 cut(s)	591
SmoI	CTYRAG	1 cut(s)	591
Sse9I	AATT	9 cut(s)	102, 152, 187, 335, 346, 442, 671, 738, 807
SsiI	CCGC	1 cut(s)	237
SspI	AATATT	1 cut(s)	124
SspMI	CTAG	1 cut(s)	366
StyD4I	CCNGG	1 cut(s)	745
StyI	CCWWGG	1 cut(s)	709
TaaI	ACNGT	2 cut(s)	136, 301
TaiI	ACGT	2 cut(s)	669, 845
TaqI	TCGA	4 cut(s)	566, 592, 760, 837
TasI	AATT	9 cut(s)	102, 152, 187, 335, 346, 442, 671, 738, 807
TfiI	GAWTC	2 cut(s)	834, 882
Tru1I	TTAA	4 cut(s)	162, 276, 320, 913
Tru9I	TTAA	4 cut(s)	162, 276, 320, 913
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	1 cut(s)	662
TseI	GCWGC	3 cut(s)	460, 470, 575
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	3 cut(s)	744, 779, 861
TspRI	CASTG	1 cut(s)	511
XapI	RAATTY	2 cut(s)	671, 738
XceI	RCATGY	2 cut(s)	213, 701
XcmI	CCANNNNNNNNNTGG	2 cut(s)	139, 650
XhoI	CTCGAG	1 cut(s)	591
XmiI	GTMKAC	1 cut(s)	78
XmnI	GAANNNNTTC	1 cut(s)	741
XspI	CTAG	1 cut(s)	366
Zsp2I	ATGCAT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.