RLG00000024749

TATA-box-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000930
Physical Location & Seq
Forward (+)
38739473 .. 38740174
702 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024749

Sequence Viewer

Length: 702 bp
ATGACGTTGGAGGCGAATTTGGCTGTTGCTGGTCGCCCTAAACCAACCATCGTGAATATAGTTTCCACCGTCAACTTGGGCTGCAAATTGGACCTAAAGAGGATTGCGAGCCGTGTCCGAAACGCAGAGTACAATCCGAAACGGTTTCATGCCATCATCATGCGAATCCGGGAACCCAAAACCACCTCTCTCATCTTCTCCTCCGGCAAGATGGTCGTCACCGGCGCCAAATCCATAGAAGAGACCAAATTTGCTGCGAGGAAGCACAGCCGAATCGTCCAGAAAGTAGGCGTTGGCGTAGGGGTTAAGGTACAGTTTATGGATTTCAAGATTCAAAACATCGTGGCATCCTGCAATGTCAACTTTGCGGTCAGGCTTGAGACTCTTTCCTTCTCCGATACTACTCTTGGGTGTGCATCGTACGAAGCCGAGATTTTCCCGGGGCTGATATACAGGGTTCTCAAGCCCAAGGTTGTCTTCCTCATCTTTGCGTCGGGGAACGTTGTCATCACTGGGGCCAAGAGCTTCGAGAATGACACGGTCAAGGCCTGGGAGCAAATGTACCCTCTTATTGCACAGCACCGGAGAAACTGCCCCTTCAACCTTGTAACGTCACCGGTCCAAGAAAAAGGTGCATCAAAAAGAGGAAGAAAAAAGAGTGTTCCATCCAGTTCTGCCTCTGAGCCAGTTAGTTGCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203
Pfam Domains
Protein Families
TBP

Protein Analysis

234

Amino Acids

25.68

Weight (kDa)

10.09

Isoelectric Point (pI)

33.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBP PF00352 15 - 95 6.8e-32 Transcription factor TFIID (or TATA-binding protein, TBP)
TBP PF00352 108 - 193 5.8e-26 Transcription factor TFIID (or TATA-binding protein, TBP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 224
AciI CCGC 1 cut(s) 368
AclI AACGTT 1 cut(s) 501
AcsI RAATTY 2 cut(s) 16, 248
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 4 cut(s) 131, 312, 422, 563
AgeI ACCGGT 1 cut(s) 616
AgsI TTSAA 3 cut(s) 328, 335, 601
AjnI CCWGG 1 cut(s) 548
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
AluBI AGCT 1 cut(s) 525
AluI AGCT 1 cut(s) 525
Alw26I GTCTC 2 cut(s) 236, 374
Ama87I CYCGRG 1 cut(s) 439
AoxI GGCC 2 cut(s) 516, 546
ApeKI GCWGC 2 cut(s) 81, 254
ApoI RAATTY 2 cut(s) 16, 248
AsiGI ACCGGT 1 cut(s) 616
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 3 cut(s) 91, 516, 619
AsuC2I CCSGG 3 cut(s) 170, 440, 441
AsuHPI GGTGA 2 cut(s) 211, 606
AvaI CYCGRG 1 cut(s) 439
AvaII GGWCC 2 cut(s) 91, 619
BanI GGYRCC 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 469
BbvI GCAGC 2 cut(s) 68, 241
BccI CCATC 4 cut(s) 56, 161, 205, 673
BceAI ACGGC 1 cut(s) 96
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 1 cut(s) 550
BcnI CCSGG 3 cut(s) 170, 440, 441
BcoDI GTCTC 2 cut(s) 236, 374
BfoI RGCGCY 1 cut(s) 228
BisI GCNGC 2 cut(s) 82, 255
BlsI GCNGC 2 cut(s) 83, 256
Bme1390I CCNGG 4 cut(s) 170, 440, 441, 550
Bme18I GGWCC 2 cut(s) 91, 619
BmeT110I CYCGRG 1 cut(s) 439
BmgT120I GGNCC 3 cut(s) 91, 516, 619
BmiI GGNNCC 3 cut(s) 174, 226, 517
BmrFI CCNGG 4 cut(s) 170, 440, 441, 550
BmrI ACTGGG 1 cut(s) 522
BmsI GCATC 3 cut(s) 356, 425, 644
BmuI ACTGGG 1 cut(s) 522
BpiI GAAGAC 1 cut(s) 469
BpuEI CTTGAG 2 cut(s) 398, 446
BpuMI CCSGG 3 cut(s) 170, 440, 441
BsaHI GRCGYC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 4 cut(s) 439, 440, 468, 549
BsaWI WCCGGW 2 cut(s) 582, 616
BsaXI ACNNNNNCTCC 2 cut(s) 545, 575
Bse118I RCCGGY 2 cut(s) 221, 616
Bse1I ACTGG 3 cut(s) 517, 669, 686
Bse3DI GCAATG 1 cut(s) 361
BseBI CCWGG 1 cut(s) 550
BseDI CCNNGG 4 cut(s) 439, 440, 468, 549
BseGI GGATG 2 cut(s) 347, 665
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 672
BseNI ACTGG 3 cut(s) 517, 669, 686
BseRI GAGGAG 1 cut(s) 190
BseXI GCAGC 2 cut(s) 68, 241
BshFI GGCC 2 cut(s) 518, 548
BshNI GGYRCC 1 cut(s) 224
BshTI ACCGGT 1 cut(s) 616
BsiHKCI CYCGRG 1 cut(s) 439
BsiSI CCGG 6 cut(s) 169, 204, 222, 440, 583, 617
BsiWI CGTACG 1 cut(s) 420
BsmAI GTCTC 2 cut(s) 236, 374
BsnI GGCC 2 cut(s) 518, 548
Bso31I GGTCTC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 439
BspACI CCGC 1 cut(s) 368
BspANI GGCC 2 cut(s) 518, 548
BspCNI CTCAG 1 cut(s) 673
BspLI GGNNCC 3 cut(s) 174, 226, 517
BspT107I GGYRCC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 361
BsrFI RCCGGY 2 cut(s) 221, 616
BsrI ACTGG 3 cut(s) 517, 669, 686
BssAI RCCGGY 2 cut(s) 221, 616
BssECI CCNNGG 4 cut(s) 439, 440, 468, 549
BssNI GRCGYC 1 cut(s) 225
BssT1I CCWWGG 1 cut(s) 468
Bst2UI CCWGG 1 cut(s) 550
Bst4CI ACNGT 4 cut(s) 70, 144, 315, 541
Bst6I CTCTTC 1 cut(s) 234
BstACI GRCGYC 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 681
BstF5I GGATG 2 cut(s) 347, 665
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 1 cut(s) 227
BstMAI GTCTC 2 cut(s) 236, 374
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 550
BstSCI CCNGG 4 cut(s) 168, 438, 439, 548
BstV1I GCAGC 2 cut(s) 68, 241
BstV2I GAAGAC 1 cut(s) 469
BsuRI GGCC 2 cut(s) 518, 548
BtsCI GGATG 2 cut(s) 347, 665
BtsIMutI CAGTG 1 cut(s) 510
Cac8I GCNNGC 1 cut(s) 109
CfoI GCGC 1 cut(s) 227
Cfr10I RCCGGY 2 cut(s) 221, 616
Cfr13I GGNCC 3 cut(s) 91, 516, 619
Cfr9I CCCGGG 1 cut(s) 439
CseI GACGC 1 cut(s) 480
Csp6I GTAC 4 cut(s) 130, 311, 421, 562
CspAI ACCGGT 1 cut(s) 616
CviAII CATG 2 cut(s) 149, 160
CviQI GTAC 4 cut(s) 130, 311, 421, 562
DdeI CTNAG 1 cut(s) 681
DinI GGCGCC 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 468
Eco147I AGGCCT 1 cut(s) 548
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 2 cut(s) 91, 619
Eco88I CYCGRG 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 548
EcoT14I CCWWGG 1 cut(s) 468
EgeI GGCGCC 1 cut(s) 226
EheI GGCGCC 1 cut(s) 226
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 2 cut(s) 152, 163
FaiI YATR 6 cut(s) 59, 150, 161, 236, 320, 451
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FatI CATG 2 cut(s) 148, 159
Fnu4HI GCNGC 2 cut(s) 82, 255
FokI GGATG 2 cut(s) 334, 652
Fsp4HI GCNGC 2 cut(s) 82, 255
GlaI GCGC 1 cut(s) 226
GluI GCNGC 2 cut(s) 82, 255
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 2 cut(s) 518, 548
HapII CCGG 6 cut(s) 169, 204, 222, 440, 583, 617
HgaI GACGC 1 cut(s) 480
HhaI GCGC 1 cut(s) 227
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 2 cut(s) 152, 163
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HincII GTYRAC 2 cut(s) 73, 361
HindII GTYRAC 2 cut(s) 73, 361
HinfI GANTC 4 cut(s) 165, 273, 331, 382
HpaII CCGG 6 cut(s) 169, 204, 222, 440, 583, 617
HphI GGTGA 2 cut(s) 211, 606
Hpy166II GTNNAC 2 cut(s) 73, 361
Hpy188I TCNGA 4 cut(s) 119, 138, 397, 682
Hpy188III TCNNGA 4 cut(s) 52, 280, 328, 529
Hpy8I GTNNAC 2 cut(s) 73, 361
Hpy99I CGWCG 1 cut(s) 496
HpyAV CCTTC 2 cut(s) 400, 607
HpyCH4III ACNGT 4 cut(s) 70, 144, 315, 541
HpyCH4IV ACGT 3 cut(s) 5, 501, 611
HpyCH4V TGCA 5 cut(s) 84, 354, 416, 575, 635
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 681
HpySE526I ACGT 3 cut(s) 5, 501, 611
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 2 cut(s) 152, 163
HspAI GCGC 1 cut(s) 225
KasI GGCGCC 1 cut(s) 224
LmnI GCTCC 1 cut(s) 553
Lsp1109I GCAGC 2 cut(s) 68, 241
LweI GCATC 3 cut(s) 356, 425, 644
MaeII ACGT 3 cut(s) 5, 501, 611
MaeIII GTNAC 3 cut(s) 217, 607, 612
MboII GAAGA 4 cut(s) 187, 251, 469, 660
MluCI AATT 3 cut(s) 16, 86, 248
Mly113I GGCGCC 1 cut(s) 225
MlyI GAGTC 1 cut(s) 376
MnlI CCTC 9 cut(s) 4, 93, 196, 211, 252, 491, 576, 638, 688
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 6 cut(s) 169, 204, 222, 440, 583, 617
MspR9I CCNGG 4 cut(s) 170, 440, 441, 550
MvaI CCWGG 1 cut(s) 550
MwoI GCNNNNNNNGC 1 cut(s) 20
NarI GGCGCC 1 cut(s) 225
NciI CCSGG 3 cut(s) 170, 440, 441
NlaIII CATG 2 cut(s) 152, 163
NlaIV GGNNCC 3 cut(s) 174, 226, 517
NmeAIII GCCGAG 1 cut(s) 454
NmuCI GTSAC 2 cut(s) 217, 612
PceI AGGCCT 1 cut(s) 548
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PfeI GAWTC 3 cut(s) 165, 273, 331
Pfl23II CGTACG 1 cut(s) 420
PflFI GACNNNGTC 1 cut(s) 539
PfoI TCCNGGA 1 cut(s) 168
PinAI ACCGGT 1 cut(s) 616
PkrI GCNGC 2 cut(s) 83, 256
PleI GAGTC 1 cut(s) 376
PluTI GGCGCC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 376
Psp1406I AACGTT 1 cut(s) 501
Psp6I CCWGG 1 cut(s) 548
PspGI CCWGG 1 cut(s) 548
PspLI CGTACG 1 cut(s) 420
PspN4I GGNNCC 3 cut(s) 174, 226, 517
PspPI GGNCC 3 cut(s) 91, 516, 619
PsyI GACNNNGTC 1 cut(s) 539
RsaI GTAC 4 cut(s) 131, 312, 422, 563
RsaNI GTAC 4 cut(s) 130, 311, 421, 562
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 2 cut(s) 82, 255
Sau96I GGNCC 3 cut(s) 91, 516, 619
SchI GAGTC 1 cut(s) 376
ScrFI CCNGG 4 cut(s) 170, 440, 441, 550
SfaNI GCATC 3 cut(s) 356, 425, 644
SfoI GGCGCC 1 cut(s) 226
SgrAI CRCCGGYG 1 cut(s) 221
SinI GGWCC 2 cut(s) 91, 619
SmaI CCCGGG 1 cut(s) 441
SmiMI CAYNNNNRTG 1 cut(s) 158
SmlI CTYRAG 2 cut(s) 377, 461
SmoI CTYRAG 2 cut(s) 377, 461
Sse9I AATT 3 cut(s) 16, 86, 248
SseBI AGGCCT 1 cut(s) 548
SsiI CCGC 1 cut(s) 368
SspDI GGCGCC 1 cut(s) 224
StuI AGGCCT 1 cut(s) 548
StyD4I CCNGG 4 cut(s) 168, 438, 439, 548
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 4 cut(s) 70, 144, 315, 541
TaiI ACGT 3 cut(s) 8, 504, 614
TaqI TCGA 1 cut(s) 528
TasI AATT 3 cut(s) 16, 86, 248
TatI WGTACW 1 cut(s) 129
TfiI GAWTC 3 cut(s) 165, 273, 331
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 2 cut(s) 217, 612
TseI GCWGC 2 cut(s) 81, 254
Tsp45I GTSAC 2 cut(s) 217, 612
TspDTI ATGAA 1 cut(s) 137
TspMI CCCGGG 1 cut(s) 439
TspRI CASTG 1 cut(s) 517
Tth111I GACNNNGTC 1 cut(s) 539
VpaK11BI GGWCC 2 cut(s) 91, 619
XapI RAATTY 2 cut(s) 16, 248
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XmaI CCCGGG 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.