Rorug03G0068600

TATA-box-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000930
Physical Location & Seq
Reverse (-)
5274097 .. 5275717
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0068600.1

Sequence Viewer

Length: 1245 bp
ATGAAAGCAAAAGTAACAGAGCTTAGCAAACTGTCAGAGGAGATGGTGGTGCCAATTCTATCAAGGTTGTCTCCCAAATCTCTGATGCGATTCAAGTGCGTACACAAGTCGTGGTATAATCTGATCAACAATCCCAGCTTCGTCGACAAGCACATCATGACCTGCAAGCGCAACAACCACTCCACATCCATCCTTTGCAAGCGTTTTATCCTCAGGGATGTCAGCACTGAAGAGAAGGAAATTGTATACTCATTGATTACTTTTTACAATGATAATTCTGGTGATGAGCATATCACTGTCGAGGACATTGATATTCCGATTTCTATGGGTATAACGACGAGAGGCCAATTCATTGGGGATGAGCTTCAAGGAGTATTGCATATTGATAGAGGGCATTGTCATGGGATTATTTGTCTCTCTGATCCTTGGAAAATTATTTTATGGAATCCAGCAATCAAAGAATTCAAGGTTCTTCCTCAGTCATGCATTCCGGATGCGAACTTTAATTCTGTAGGATTAGGTTATGACCCTAAATCTAAAGATTACAAAGTTGTTAGTATTAGACAAGACGAAATAGGAAATGAAGATGACCGTATTGTTATTTATCCTCCTAGGGCAGAAGTATATACGTTGGGAAAGAATTCGTGGAGAGAGATCAGGACTGATATTCTAGAGAGAGAAGTTACAAACTTTTGGCCGGAATTCTTCCAATTGTACTTCAAAGGAATTTGTTATTGGATGGGACGTGAGCAACGAAAGGAATTTCTCACTCTTTATGCTATAGTTGCGGGTGAAGATGAATGGGTTCGGTACGTGATCATTTTCTTTGATACGACTAATGAAGTATTTGATCACATACTACTTCCGTATAGCTTATACGAACAAGATGCGCAGTATTCTGATATGCACATTGTTGTGTGGAAGGAAACTATCGCTCTTTTTGGCTTGTACCGAATCGGTGGTCCAGATGCATATGGATTATGGGTAATGGATAATTTGGGTAGCGGTAAGGTTTCCTGGACAAAACAGGTAACCTTAGAAGCTGTAGTGGGAATCAAGAAGGATTTGGAATTCTGGAACAGTGATGAAATTCTTATGATCGCCACAGATGGCCGTATAGCTTCATACAACATTAGTACCAAAAAGATCAATTATCTTTCCATTGAAAGTATGTATCCAGAGAACACTGAAGCCGTTGTTTGTTTTAATAGTATAGTTTCTATAAATAGAAGGCAACAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203
Pfam Domains
Protein Families
TBP

Protein Analysis

414

Amino Acids

48.0

Weight (kDa)

5.51

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 8 - 47 4e-08 F-box domain
FBA_1 PF07734 125 - 374 1.1e-25 F-box associated beta propeller domain
FBA_3 PF08268 132 - 345 1.1e-19 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 891
Acc36I ACCTGC 1 cut(s) 170
AccB1I GGYRCC 1 cut(s) 49
AccI GTMKAC 2 cut(s) 144, 246
AccIII TCCGGA 1 cut(s) 490
AciI CCGC 2 cut(s) 788, 1005
AclWI GGATC 1 cut(s) 416
AcoI YGGCCR 2 cut(s) 695, 1111
AcsI RAATTY 7 cut(s) 461, 640, 701, 726, 761, 1070, 1089
AcuI CTGAAG 2 cut(s) 249, 1209
AfaI GTAC 5 cut(s) 102, 716, 812, 950, 1138
AgsI TTSAA 5 cut(s) 94, 368, 466, 721, 1166
AjiI CACGTC 1 cut(s) 746
AjnI CCWGG 1 cut(s) 1016
AjuI GAANNNNNNNTTGG 2 cut(s) 718, 750
AluBI AGCT 7 cut(s) 22, 138, 364, 873, 1043, 1121, 1241
AluI AGCT 7 cut(s) 22, 138, 364, 873, 1043, 1121, 1241
Alw26I GTCTC 2 cut(s) 75, 419
AlwI GGATC 1 cut(s) 416
Aor13HI TCCGGA 1 cut(s) 490
AoxI GGCC 3 cut(s) 343, 695, 1111
ApoI RAATTY 7 cut(s) 461, 640, 701, 726, 761, 1070, 1089
ArsI GACNNNNNNTTYG 2 cut(s) 946, 978
Asp700I GAANNNNTTC 2 cut(s) 640, 804
AspA2I CCTAGG 1 cut(s) 611
AspLEI GCGC 2 cut(s) 171, 892
AspS9I GGNCC 1 cut(s) 962
AsuHPI GGTGA 2 cut(s) 293, 803
AvaII GGWCC 1 cut(s) 962
AvrII CCTAGG 1 cut(s) 611
AxyI CCTNAGG 1 cut(s) 212
BaeI ACNNNNGTAYC 2 cut(s) 1120, 1153
BanI GGYRCC 1 cut(s) 49
BccI CCATC 4 cut(s) 37, 197, 733, 1103
BceAI ACGGC 2 cut(s) 1098, 1178
BcgI CGANNNNNNTGC 4 cut(s) 78, 112, 869, 903
BciT130I CCWGG 1 cut(s) 1018
BciVI GTATCC 1 cut(s) 1185
BclI TGATCA 3 cut(s) 123, 816, 850
BcoDI GTCTC 2 cut(s) 75, 419
BfaI CTAG 2 cut(s) 612, 671
BfmI CTRYAG 3 cut(s) 510, 780, 1044
BfuAI ACCTGC 1 cut(s) 170
BfuI GTATCC 1 cut(s) 1185
BlnI CCTAGG 1 cut(s) 611
BlpI GCTNAGC 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 1018
Bme18I GGWCC 1 cut(s) 962
BmgBI CACGTC 1 cut(s) 746
BmgT120I GGNCC 1 cut(s) 962
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 1018
BmsI GCATC 4 cut(s) 75, 484, 877, 958
Bpu1102I GCTNAGC 1 cut(s) 23
BsaAI YACGTR 1 cut(s) 814
BsaJI CCNNGG 2 cut(s) 425, 611
BsaWI WCCGGW 1 cut(s) 490
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bse21I CCTNAGG 1 cut(s) 212
BseAI TCCGGA 1 cut(s) 490
BseBI CCWGG 1 cut(s) 1018
BseDI CCNNGG 2 cut(s) 425, 611
BseGI GGATG 6 cut(s) 185, 189, 223, 364, 499, 744
BseMII CTCAG 2 cut(s) 226, 491
BseRI GAGGAG 1 cut(s) 53
BseYI CCCAGC 1 cut(s) 134
BshFI GGCC 3 cut(s) 345, 697, 1113
BshNI GGYRCC 1 cut(s) 49
BsiSI CCGG 2 cut(s) 491, 698
BslFI GGGAC 1 cut(s) 756
BsmAI GTCTC 2 cut(s) 75, 419
BsmFI GGGAC 1 cut(s) 756
BsmI GAATGC 1 cut(s) 486
BsnI GGCC 3 cut(s) 345, 697, 1113
Bsp13I TCCGGA 1 cut(s) 490
Bsp143I GATC 7 cut(s) 123, 421, 654, 816, 850, 1098, 1146
Bsp1720I GCTNAGC 1 cut(s) 23
BspACI CCGC 2 cut(s) 788, 1005
BspANI GGCC 3 cut(s) 345, 697, 1113
BspCNI CTCAG 2 cut(s) 225, 490
BspEI TCCGGA 1 cut(s) 490
BspHI TCATGA 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 51
BspMI ACCTGC 1 cut(s) 170
BspPI GGATC 1 cut(s) 416
BspT107I GGYRCC 1 cut(s) 49
BssECI CCNNGG 2 cut(s) 425, 611
BssMI GATC 7 cut(s) 123, 421, 654, 816, 850, 1098, 1146
BssNAI GTATAC 1 cut(s) 247
BssT1I CCWWGG 2 cut(s) 425, 611
Bst1107I GTATAC 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 1018
Bst4CI ACNGT 4 cut(s) 33, 298, 593, 1082
Bst6I CTCTTC 1 cut(s) 225
BstBAI YACGTR 1 cut(s) 814
BstC8I GCNNGC 2 cut(s) 167, 200
BstDEI CTNAG 4 cut(s) 23, 212, 477, 1036
BstEII GGTNACC 1 cut(s) 1030
BstF5I GGATG 6 cut(s) 185, 189, 223, 364, 499, 744
BstHHI GCGC 2 cut(s) 171, 892
BstKTI GATC 7 cut(s) 126, 424, 657, 819, 853, 1101, 1149
BstMAI GTCTC 2 cut(s) 75, 419
BstMBI GATC 7 cut(s) 123, 421, 654, 816, 850, 1098, 1146
BstMWI GCNNNNNNNGC 1 cut(s) 785
BstNI CCWGG 1 cut(s) 1018
BstPI GGTNACC 1 cut(s) 1030
BstSCI CCNGG 1 cut(s) 1016
BstSFI CTRYAG 3 cut(s) 510, 780, 1044
BstXI CCANNNNNNTGG 1 cut(s) 353
BstZ17I GTATAC 1 cut(s) 247
Bsu36I CCTNAGG 1 cut(s) 212
BsuI GTATCC 1 cut(s) 1185
BsuRI GGCC 3 cut(s) 345, 697, 1113
BtrI CACGTC 1 cut(s) 746
BtsCI GGATG 6 cut(s) 185, 189, 223, 364, 499, 744
BtsIMutI CAGTG 4 cut(s) 225, 294, 1087, 1185
BveI ACCTGC 1 cut(s) 170
Cac8I GCNNGC 2 cut(s) 167, 200
CciI TCATGA 1 cut(s) 156
CfoI GCGC 2 cut(s) 171, 892
Cfr13I GGNCC 1 cut(s) 962
Csp6I GTAC 5 cut(s) 101, 715, 811, 949, 1137
CviAII CATG 3 cut(s) 157, 401, 483
CviQI GTAC 5 cut(s) 101, 715, 811, 949, 1137
DdeI CTNAG 4 cut(s) 23, 212, 477, 1036
DpnI GATC 7 cut(s) 125, 423, 656, 818, 852, 1100, 1148
DpnII GATC 7 cut(s) 123, 421, 654, 816, 850, 1098, 1146
EaeI YGGCCR 2 cut(s) 695, 1111
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco130I CCWWGG 2 cut(s) 425, 611
Eco47I GGWCC 1 cut(s) 962
Eco57I CTGAAG 2 cut(s) 249, 1209
Eco81I CCTNAGG 1 cut(s) 212
Eco91I GGTNACC 1 cut(s) 1030
EcoO65I GGTNACC 1 cut(s) 1030
EcoRI GAATTC 4 cut(s) 461, 640, 701, 1070
EcoRII CCWGG 1 cut(s) 1016
EcoT14I CCWWGG 2 cut(s) 425, 611
EcoT22I ATGCAT 2 cut(s) 488, 973
ErhI CCWWGG 2 cut(s) 425, 611
FaeI CATG 3 cut(s) 160, 404, 486
FaqI GGGAC 1 cut(s) 756
FatI CATG 3 cut(s) 156, 400, 482
FauI CCCGC 1 cut(s) 781
FauNDI CATATG 1 cut(s) 973
FbaI TGATCA 3 cut(s) 123, 816, 850
FblI GTMKAC 2 cut(s) 144, 246
FokI GGATG 6 cut(s) 172, 176, 230, 371, 506, 751
FspBI CTAG 2 cut(s) 612, 671
FspI TGCGCA 1 cut(s) 891
GlaI GCGC 2 cut(s) 170, 891
GsaI CCCAGC 1 cut(s) 138
HaeIII GGCC 3 cut(s) 345, 697, 1113
HapII CCGG 2 cut(s) 491, 698
HhaI GCGC 2 cut(s) 171, 892
Hin1II CATG 3 cut(s) 160, 404, 486
Hin6I GCGC 2 cut(s) 169, 890
HinP1I GCGC 2 cut(s) 169, 890
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HindIII AAGCTT 1 cut(s) 1239
HinfI GANTC 4 cut(s) 90, 445, 954, 1053
HpaII CCGG 2 cut(s) 491, 698
HphI GGTGA 2 cut(s) 293, 803
Hpy166II GTNNAC 3 cut(s) 103, 145, 247
Hpy188I TCNGA 6 cut(s) 37, 84, 123, 318, 421, 901
Hpy188III TCNNGA 8 cut(s) 157, 491, 658, 671, 965, 1057, 1075, 1178
Hpy8I GTNNAC 3 cut(s) 103, 145, 247
Hpy99I CGWCG 2 cut(s) 146, 340
HpyAV CCTTC 4 cut(s) 229, 916, 1054, 1224
HpyCH4III ACNGT 4 cut(s) 33, 298, 593, 1082
HpyCH4IV ACGT 3 cut(s) 629, 745, 813
HpyCH4V TGCA 6 cut(s) 165, 198, 379, 486, 907, 971
HpyF10VI GCNNNNNNNGC 1 cut(s) 785
HpyF3I CTNAG 4 cut(s) 23, 212, 477, 1036
HpySE526I ACGT 3 cut(s) 629, 745, 813
Hsp92II CATG 3 cut(s) 160, 404, 486
HspAI GCGC 2 cut(s) 169, 890
Kpn2I TCCGGA 1 cut(s) 490
Ksp22I TGATCA 3 cut(s) 123, 816, 850
Kzo9I GATC 7 cut(s) 123, 421, 654, 816, 850, 1098, 1146
LweI GCATC 4 cut(s) 75, 484, 877, 958
MaeI CTAG 2 cut(s) 612, 671
MaeII ACGT 3 cut(s) 629, 745, 813
MaeIII GTNAC 3 cut(s) 13, 682, 1030
MalI GATC 7 cut(s) 125, 423, 656, 818, 852, 1100, 1148
MboI GATC 7 cut(s) 123, 421, 654, 816, 850, 1098, 1146
MboII GAAGA 5 cut(s) 242, 464, 596, 697, 806
MfeI CAATTG 1 cut(s) 710
MnlI CCTC 7 cut(s) 31, 221, 295, 335, 383, 486, 618
Mph1103I ATGCAT 2 cut(s) 488, 973
MroI TCCGGA 1 cut(s) 490
MroXI GAANNNNTTC 2 cut(s) 640, 804
MseI TTAA 3 cut(s) 504, 1206, 1243
MslI CAYNNNNRTG 2 cut(s) 399, 914
MspI CCGG 2 cut(s) 491, 698
MspR9I CCNGG 1 cut(s) 1018
MunI CAATTG 1 cut(s) 710
Mva1269I GAATGC 1 cut(s) 486
MvaI CCWGG 1 cut(s) 1018
MwoI GCNNNNNNNGC 1 cut(s) 785
NdeI CATATG 1 cut(s) 973
NdeII GATC 7 cut(s) 123, 421, 654, 816, 850, 1098, 1146
NlaIII CATG 3 cut(s) 160, 404, 486
NlaIV GGNNCC 1 cut(s) 51
NsbI TGCGCA 1 cut(s) 891
NsiI ATGCAT 2 cut(s) 488, 973
PagI TCATGA 1 cut(s) 156
PcsI WCGNNNNNNNCGW 1 cut(s) 751
PctI GAATGC 1 cut(s) 486
PdmI GAANNNNTTC 2 cut(s) 640, 804
PfeI GAWTC 4 cut(s) 90, 445, 954, 1053
PfoI TCCNGGA 1 cut(s) 1016
Ppu21I YACGTR 1 cut(s) 814
Psp6I CCWGG 1 cut(s) 1016
PspEI GGTNACC 1 cut(s) 1030
PspFI CCCAGC 1 cut(s) 134
PspGI CCWGG 1 cut(s) 1016
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 962
RsaI GTAC 5 cut(s) 102, 716, 812, 950, 1138
RsaNI GTAC 5 cut(s) 101, 715, 811, 949, 1137
RseI CAYNNNNRTG 2 cut(s) 399, 914
SalI GTCGAC 1 cut(s) 143
SaqAI TTAA 3 cut(s) 504, 1206, 1243
Sau3AI GATC 7 cut(s) 123, 421, 654, 816, 850, 1098, 1146
Sau96I GGNCC 1 cut(s) 962
ScrFI CCNGG 1 cut(s) 1018
SfaNI GCATC 4 cut(s) 75, 484, 877, 958
SfcI CTRYAG 3 cut(s) 510, 780, 1044
SinI GGWCC 1 cut(s) 962
SmiMI CAYNNNNRTG 2 cut(s) 399, 914
SsiI CCGC 2 cut(s) 788, 1005
SspMI CTAG 2 cut(s) 612, 671
StyD4I CCNGG 1 cut(s) 1016
StyI CCWWGG 2 cut(s) 425, 611
TaaI ACNGT 4 cut(s) 33, 298, 593, 1082
TaiI ACGT 3 cut(s) 632, 748, 816
TaqI TCGA 2 cut(s) 144, 300
TatI WGTACW 1 cut(s) 714
TfiI GAWTC 4 cut(s) 90, 445, 954, 1053
Tru1I TTAA 3 cut(s) 504, 1206, 1243
Tru9I TTAA 3 cut(s) 504, 1206, 1243
TscAI CASTG 4 cut(s) 232, 301, 1087, 1192
TspDTI ATGAA 7 cut(s) 17, 340, 597, 813, 855, 1101, 1113
TspGWI ACGGA 1 cut(s) 855
TspRI CASTG 4 cut(s) 232, 301, 1087, 1192
VpaK11BI GGWCC 1 cut(s) 962
XapI RAATTY 7 cut(s) 461, 640, 701, 726, 761, 1070, 1089
XbaI TCTAGA 1 cut(s) 670
XmaJI CCTAGG 1 cut(s) 611
XmiI GTMKAC 2 cut(s) 144, 246
XmnI GAANNNNTTC 2 cut(s) 640, 804
XspI CTAG 2 cut(s) 612, 671
Zsp2I ATGCAT 2 cut(s) 488, 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.