FvH4_3g32450

TATA-box-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000930
Physical Location & Seq
Reverse (-)
27742445 .. 27744456
2012 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g32450.t1

Sequence Viewer

Length: 846 bp
ATGGAGAAGGGATTCAACGGAATCTCTATCTCCAGCTTTGCTGCAGAGGTCGGATTGAAGAGGAGCAAGGCGGTGGAAGAATTGAGTAAGTTGATGGGTTATGAGTTTAGACAATTTCATAACGTGATCTCTACGGTTAACCTGGGCTGCAAGTTAGATCTTCATCAAATCACTGTGAAGGCTCAAAACGCAGAATACAATCCCAAGCGTTTGCATTCCGTGATAATGAGAACGAGAGATCCAAAGGCCACAGTTTTGATCTTCGCCTCTGGGAAAATGGTGTGCACTGGTGCCAAAAGCGAAGCCGAGTCGGAACTCGCAGCTAGGAAGTGTGTACGAACCATCCTGAAGATGGGTTTCGCCAAGTTCAAGGATTTCAAGATCCAGAACATGGTTGCCAACAGTGATGTCAGATTTCCGATCAGACTTGAAGGCTTGGCTTATGCGAACCCCCAGTGTACGAGTTATGAGCCGGAACTTTTTCCGGGGCTGAGGTACCGCATGAAGGAACCCAAGATTACTCTTCTTGTATTCGCGTCGGGGAAACTAGTCATCACAGGTGCAAAGCACAGAGAAGACATCCATAAGGCCTTTGAGGTCATATACCCTGCTCTTGAAGAGTTTAAGAAATCTATCACTCTTTCGCTCTCTGTGTCTTTCAGTCTTTCACTCTTTCCTCCTCCTCGCCTCCGCTTCCTCCTCACAAACTATAACCGGCGACGAGGCCTCCGCTTCCTCTTCCCAGGCCTCGACTTCCTCCTCCTCTTCCTCTTCCCAGGCCTCTGCTTCCTCCTCCGTTTCCTCTTCCCTCGCCTCCGCTTCCTCCTCATGAACTATAACCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203
Pfam Domains
Protein Families
TBP

Protein Analysis

282

Amino Acids

32.22

Weight (kDa)

10.01

Isoelectric Point (pI)

33.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBP PF00352 39 - 117 4.8e-28 Transcription factor TFIID (or TATA-binding protein, TBP)
TBP PF00352 125 - 208 6.6e-31 Transcription factor TFIID (or TATA-binding protein, TBP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 495
AccB1I GGYRCC 2 cut(s) 290, 495
AccB7I CCANNNNNTGG 1 cut(s) 391
AccII CGCG 1 cut(s) 536
AciI CCGC 5 cut(s) 71, 499, 691, 730, 817
AclWI GGATC 2 cut(s) 233, 376
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 3 cut(s) 336, 460, 497
AfiI CCNNNNNNNGG 3 cut(s) 352, 391, 505
AgeI ACCGGT 1 cut(s) 840
AgsI TTSAA 6 cut(s) 16, 58, 370, 379, 431, 617
AhlI ACTAGT 1 cut(s) 547
AjnI CCWGG 3 cut(s) 141, 742, 775
AloI GAACNNNNNNTCC 2 cut(s) 223, 255
AluBI AGCT 2 cut(s) 36, 323
AluI AGCT 2 cut(s) 36, 323
Alw21I GWGCWC 1 cut(s) 287
Alw44I GTGCAC 1 cut(s) 283
AlwI GGATC 2 cut(s) 233, 376
AoxI GGCC 5 cut(s) 246, 588, 724, 745, 778
ApaLI GTGCAC 1 cut(s) 283
ApeKI GCWGC 3 cut(s) 41, 147, 320
AsiGI ACCGGT 1 cut(s) 840
Asp700I GAANNNNTTC 2 cut(s) 11, 480
Asp718I GGTACC 1 cut(s) 495
AsuC2I CCSGG 1 cut(s) 486
BaeGI GKGCMC 1 cut(s) 287
BanI GGYRCC 2 cut(s) 290, 495
BbsI GAAGAC 1 cut(s) 582
Bbv12I GWGCWC 1 cut(s) 287
BbvCI CCTCAGC 1 cut(s) 491
BbvI GCAGC 3 cut(s) 28, 134, 332
BccI CCATC 3 cut(s) 88, 346, 350
BciT130I CCWGG 3 cut(s) 143, 744, 777
BcnI CCSGG 1 cut(s) 486
BcuI ACTAGT 1 cut(s) 547
BfaI CTAG 2 cut(s) 324, 548
BfmI CTRYAG 1 cut(s) 42
BglII AGATCT 1 cut(s) 157
BisI GCNGC 3 cut(s) 42, 148, 321
BlsI GCNGC 3 cut(s) 43, 149, 322
Bme1390I CCNGG 4 cut(s) 143, 486, 744, 777
BmiI GGNNCC 3 cut(s) 292, 497, 510
BmrFI CCNGG 4 cut(s) 143, 486, 744, 777
BmrI ACTGGG 1 cut(s) 448
BmuI ACTGGG 1 cut(s) 448
BpiI GAAGAC 1 cut(s) 582
BpmI CTGGAG 1 cut(s) 16
Bpu10I CCTNAGC 1 cut(s) 491
BpuMI CCSGG 1 cut(s) 486
BsaBI GATNNNNATC 1 cut(s) 162
BsaJI CCNNGG 4 cut(s) 142, 485, 742, 775
BsaWI WCCGGW 1 cut(s) 840
BsaXI ACNNNNNCTCC 2 cut(s) 711, 741
Bsc4I CCNNNNNNNGG 3 cut(s) 352, 391, 505
Bse118I RCCGGY 2 cut(s) 714, 840
Bse1I ACTGG 2 cut(s) 292, 454
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 3 cut(s) 143, 744, 777
BseDI CCNNGG 4 cut(s) 142, 485, 742, 775
BseGI GGATG 2 cut(s) 342, 579
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 3 cut(s) 352, 391, 505
BseMII CTCAG 1 cut(s) 482
BseNI ACTGG 2 cut(s) 292, 454
BseRI GAGGAG 8 cut(s) 76, 669, 672, 689, 749, 752, 782, 815
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 3 cut(s) 28, 134, 332
Bsh1236I CGCG 1 cut(s) 536
BshFI GGCC 5 cut(s) 248, 590, 726, 747, 780
BshNI GGYRCC 2 cut(s) 290, 495
BshTI ACCGGT 1 cut(s) 840
BsiHKAI GWGCWC 1 cut(s) 287
BsiSI CCGG 4 cut(s) 473, 485, 715, 841
BslI CCNNNNNNNGG 3 cut(s) 352, 391, 505
BsmI GAATGC 1 cut(s) 214
BsnI GGCC 5 cut(s) 248, 590, 726, 747, 780
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 6 cut(s) 126, 157, 238, 258, 381, 420
BspACI CCGC 5 cut(s) 71, 499, 691, 730, 817
BspANI GGCC 5 cut(s) 248, 590, 726, 747, 780
BspCNI CTCAG 1 cut(s) 483
BspFNI CGCG 1 cut(s) 536
BspHI TCATGA 1 cut(s) 828
BspLI GGNNCC 3 cut(s) 292, 497, 510
BspMAI CTGCAG 1 cut(s) 46
BspPI GGATC 2 cut(s) 233, 376
BspT107I GGYRCC 2 cut(s) 290, 495
BsrFI RCCGGY 2 cut(s) 714, 840
BsrI ACTGG 2 cut(s) 292, 454
BssAI RCCGGY 2 cut(s) 714, 840
BssECI CCNNGG 4 cut(s) 142, 485, 742, 775
BssMI GATC 6 cut(s) 126, 157, 238, 258, 381, 420
Bst2UI CCWGG 3 cut(s) 143, 744, 777
Bst4CI ACNGT 4 cut(s) 136, 175, 253, 404
Bst6I CTCTTC 7 cut(s) 53, 528, 612, 743, 770, 776, 809
BstDEI CTNAG 1 cut(s) 491
BstF5I GGATG 2 cut(s) 342, 579
BstFNI CGCG 1 cut(s) 536
BstKTI GATC 6 cut(s) 129, 160, 241, 261, 384, 423
BstMBI GATC 6 cut(s) 126, 157, 238, 258, 381, 420
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNI CCWGG 3 cut(s) 143, 744, 777
BstSCI CCNGG 4 cut(s) 141, 484, 742, 775
BstSFI CTRYAG 1 cut(s) 42
BstSLI GKGCMC 1 cut(s) 287
BstUI CGCG 1 cut(s) 536
BstV1I GCAGC 3 cut(s) 28, 134, 332
BstV2I GAAGAC 1 cut(s) 582
BstX2I RGATCY 3 cut(s) 157, 238, 381
BstYI RGATCY 3 cut(s) 157, 238, 381
BsuRI GGCC 5 cut(s) 248, 590, 726, 747, 780
BtsCI GGATG 2 cut(s) 342, 579
BtsIMutI CAGTG 4 cut(s) 171, 285, 409, 461
CciI TCATGA 1 cut(s) 828
Cfr10I RCCGGY 2 cut(s) 714, 840
CseI GACGC 1 cut(s) 525
Csp6I GTAC 3 cut(s) 335, 459, 496
CspAI ACCGGT 1 cut(s) 840
CviAII CATG 3 cut(s) 391, 502, 829
CviQI GTAC 3 cut(s) 335, 459, 496
DdeI CTNAG 1 cut(s) 491
DpnI GATC 6 cut(s) 128, 159, 240, 260, 383, 422
DpnII GATC 6 cut(s) 126, 157, 238, 258, 381, 420
Eam1104I CTCTTC 7 cut(s) 53, 528, 612, 743, 770, 776, 809
EarI CTCTTC 7 cut(s) 53, 528, 612, 743, 770, 776, 809
Eco147I AGGCCT 4 cut(s) 590, 726, 747, 780
Eco57I CTGAAG 1 cut(s) 368
EcoRII CCWGG 3 cut(s) 141, 742, 775
FaeI CATG 3 cut(s) 394, 505, 832
FatI CATG 3 cut(s) 390, 501, 828
Fnu4HI GCNGC 3 cut(s) 42, 148, 321
FokI GGATG 2 cut(s) 329, 566
Fsp4HI GCNGC 3 cut(s) 42, 148, 321
FspBI CTAG 2 cut(s) 324, 548
GluI GCNGC 3 cut(s) 42, 148, 321
GsuI CTGGAG 1 cut(s) 16
HaeIII GGCC 5 cut(s) 248, 590, 726, 747, 780
HapII CCGG 4 cut(s) 473, 485, 715, 841
HgaI GACGC 1 cut(s) 525
Hin1II CATG 3 cut(s) 394, 505, 832
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 3 cut(s) 12, 21, 308
HpaI GTTAAC 1 cut(s) 139
HpaII CCGG 4 cut(s) 473, 485, 715, 841
Hpy166II GTNNAC 4 cut(s) 139, 285, 335, 459
Hpy188I TCNGA 5 cut(s) 53, 313, 413, 420, 425
Hpy188III TCNNGA 5 cut(s) 346, 379, 385, 614, 829
Hpy8I GTNNAC 4 cut(s) 139, 285, 335, 459
Hpy99I CGWCG 2 cut(s) 541, 723
HpyAV CCTTC 3 cut(s) 172, 425, 499
HpyCH4III ACNGT 4 cut(s) 136, 175, 253, 404
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 5 cut(s) 44, 150, 214, 285, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 491
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 3 cut(s) 394, 505, 832
KpnI GGTACC 1 cut(s) 499
KspAI GTTAAC 1 cut(s) 139
Kzo9I GATC 6 cut(s) 126, 157, 238, 258, 381, 420
LmnI GCTCC 1 cut(s) 63
Lsp1109I GCAGC 3 cut(s) 28, 134, 332
MaeI CTAG 2 cut(s) 324, 548
MaeII ACGT 1 cut(s) 123
MalI GATC 6 cut(s) 128, 159, 240, 260, 383, 422
MboI GATC 6 cut(s) 126, 157, 238, 258, 381, 420
MflI RGATCY 3 cut(s) 157, 238, 381
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 2 cut(s) 80, 113
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 2 cut(s) 31, 291
MroXI GAANNNNTTC 2 cut(s) 11, 480
MseI TTAA 2 cut(s) 138, 624
MspI CCGG 4 cut(s) 473, 485, 715, 841
MspR9I CCNGG 4 cut(s) 143, 486, 744, 777
Mva1269I GAATGC 1 cut(s) 214
MvaI CCWGG 3 cut(s) 143, 744, 777
MvnI CGCG 1 cut(s) 536
MwoI GCNNNNNNNGC 1 cut(s) 188
NciI CCSGG 1 cut(s) 486
NdeII GATC 6 cut(s) 126, 157, 238, 258, 381, 420
NlaIII CATG 3 cut(s) 394, 505, 832
NlaIV GGNNCC 3 cut(s) 292, 497, 510
NmeAIII GCCGAG 1 cut(s) 331
PagI TCATGA 1 cut(s) 828
PceI AGGCCT 4 cut(s) 590, 726, 747, 780
PctI GAATGC 1 cut(s) 214
PdmI GAANNNNTTC 2 cut(s) 11, 480
PfeI GAWTC 2 cut(s) 12, 21
PflMI CCANNNNNTGG 1 cut(s) 391
PinAI ACCGGT 1 cut(s) 840
PkrI GCNGC 3 cut(s) 43, 149, 322
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
Psp6I CCWGG 3 cut(s) 141, 742, 775
PspGI CCWGG 3 cut(s) 141, 742, 775
PspN4I GGNNCC 3 cut(s) 292, 497, 510
PstI CTGCAG 1 cut(s) 46
PsuI RGATCY 3 cut(s) 157, 238, 381
RsaI GTAC 3 cut(s) 336, 460, 497
RsaNI GTAC 3 cut(s) 335, 459, 496
SaqAI TTAA 2 cut(s) 138, 624
SatI GCNGC 3 cut(s) 42, 148, 321
Sau3AI GATC 6 cut(s) 126, 157, 238, 258, 381, 420
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 4 cut(s) 143, 486, 744, 777
SduI GDGCHC 1 cut(s) 287
SetI ASST 8 cut(s) 38, 51, 126, 144, 325, 497, 562, 600
SfcI CTRYAG 1 cut(s) 42
SpeI ACTAGT 1 cut(s) 547
Sse9I AATT 2 cut(s) 80, 113
SseBI AGGCCT 4 cut(s) 590, 726, 747, 780
SsiI CCGC 5 cut(s) 71, 499, 691, 730, 817
SspMI CTAG 2 cut(s) 324, 548
StuI AGGCCT 4 cut(s) 590, 726, 747, 780
StyD4I CCNGG 4 cut(s) 141, 484, 742, 775
TaaI ACNGT 4 cut(s) 136, 175, 253, 404
TaiI ACGT 1 cut(s) 126
TaqI TCGA 1 cut(s) 750
TasI AATT 2 cut(s) 80, 113
TfiI GAWTC 2 cut(s) 12, 21
Tru1I TTAA 2 cut(s) 138, 624
Tru9I TTAA 2 cut(s) 138, 624
TscAI CASTG 4 cut(s) 178, 292, 409, 461
TseI GCWGC 3 cut(s) 41, 147, 320
TspDTI ATGAA 4 cut(s) 107, 152, 518, 845
TspGWI ACGGA 3 cut(s) 33, 208, 785
TspRI CASTG 4 cut(s) 178, 292, 409, 461
Van91I CCANNNNNTGG 1 cut(s) 391
VneI GTGCAC 1 cut(s) 283
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
XmnI GAANNNNTTC 2 cut(s) 11, 480
XspI CTAG 2 cut(s) 324, 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.