Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000930

Physical Location & Seq

Genomic Coordinates Reverse (-)

19821866 .. 19828023

Gene Structure 6158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28010.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGAAAAACAAGGGGGATTGGAAGAGAGCCAACCCGTGGATCTCTCCAAGCACCCATCTGGCATCGTTCCCACTCTTCAGAATATCGTATCTACAGTTAATTTGGATTGCAAGTTGGATCTCAAGCAAATTGCATTGCAAGCTCGAAATGCAGAATACAATCCCAAGCGTTTTGCTGCTGTCATAATGAGAATTAGGGAACCAAAAACTACAGCATTGATATTTGCCTCTGGGAAGATGCCTGCACTTTTACAAACTATGGCTTCAAATTGTGACTTGTACAACAACCCTTACAGTACTGCAATGTCTTCTAATGCTTGGACCTTGGTATGCACAGGTGCCAAAAGTGAACAACAATCAAAGTTGGCAGCAAGGAAGTATGCCCGAATTATCCAGAAGCTTGGTTTTCCGGCTAAGTTCAAGGATTTTAAGATTCAAAACATTGTTGCCTCATGTGATGTTAAATTCCCAATCAGACTTGAAGGCCTAGCATACTCCCATGGGGCCTTTTCAAGTTATGAGCCGGAACTCTTTCCTGGACTAATATATCGCATGAAGCAGCCAAAGATTGTTCTGCTGATATTCGTGTCGGGGAAAATTGTTATAACGGGTGCAAAGGTGAGAGATGACACCTACAAGGCATTTGAGTTGATATTCCCTGTCCTCACAGAGTTCAGGAAGGTCCAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203

Pfam Domains

Protein Families

TBP

Protein Analysis

231

Amino Acids

25.73

Weight (kDa)

9.57

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TBP	PF00352	24 - 80	4.8e-22	Transcription factor TFIID (or TATA-binding protein, TBP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55520 AT1G55520 AT1G55520 AT1G55520 AT3G13445 AT3G13445
fragaria_vesca	FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_3g32401 FvH4_3g32450 FvH4_3g45850 FvH4_3g45850 FvH4_4g21060 FvH4_6g12030
malus_domestica	MD03G1002100.v1.1 MD11G1002100.v1.1 MD12G1002700.v1.1 MD12G1176800.v1.1 MD14G1002000.v1.1
prunus_persica	Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.7G002800_v2.0.a1 Prupe.7G002800_v2.0.a1
pyrus_communis	pycom11g00190 pycom12g16680
rosa_chinensis	RchiOBHm_Chr3g0463861 RchiOBHm_Chr3g0497421 RchiOBHm_Chr5g0083961
rosa_laevigata	RLG00000022465 RLG00000024749 RLG00000035285 RLG00000037068
rosa_multiflora	Rmu_sc0004796.1_g000003
rosa_roxburghii	Rroxscaffold_1G00000660 Rroxscaffold_6G00388060 Rroxscaffold_6G00416240
rosa_rugosa	Rorug03G0068600 Rorug03G0292900 Rorug05G0488000 Rorug05G0488100
rosa_samantha	Rh3AG125700 Rh3AG336400 Rh3BG129800 Rh3BG374500 Rh3CG132300 Rh3CG370600 Rh3DG130900 Rh3DG371500 Rh3DG372800 Rh5AG540800 Rh5BG565800 Rh5CG587700 Rh5DG574400
rosa_wichuraiana	Rw3G010610 Rw3G029570 Rw5G050290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	605
AccB1I	GGYRCC	1 cut(s)	338
AccB7I	CCANNNNNTGG	1 cut(s)	37
AclWI	GGATC	2 cut(s)	48, 126
AcsI	RAATTY	1 cut(s)	464
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	2 cut(s)	281, 298
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	5 cut(s)	267, 421, 437, 482, 513
AjnI	CCWGG	1 cut(s)	535
AluBI	AGCT	2 cut(s)	143, 400
AluI	AGCT	2 cut(s)	143, 400
AlwI	GGATC	2 cut(s)	48, 126
AoxI	GGCC	2 cut(s)	484, 504
ApeKI	GCWGC	3 cut(s)	176, 368, 559
ApoI	RAATTY	1 cut(s)	464
Asp700I	GAANNNNTTC	1 cut(s)	531
AspS9I	GGNCC	3 cut(s)	321, 504, 682
AsuHPI	GGTGA	1 cut(s)	631
AvaII	GGWCC	2 cut(s)	321, 682
BanI	GGYRCC	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	300
BbvI	GCAGC	3 cut(s)	163, 380, 571
BccI	CCATC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	537
BfaI	CTAG	1 cut(s)	488
BfmI	CTRYAG	2 cut(s)	93, 210
BisI	GCNGC	3 cut(s)	177, 369, 560
BlsI	GCNGC	3 cut(s)	178, 370, 561
BmcAI	AGTACT	1 cut(s)	298
Bme1390I	CCNGG	1 cut(s)	537
Bme18I	GGWCC	2 cut(s)	321, 682
BmgT120I	GGNCC	3 cut(s)	321, 504, 682
BmiI	GGNNCC	3 cut(s)	201, 340, 505
BmrFI	CCNGG	1 cut(s)	537
BmsI	GCATC	2 cut(s)	72, 228
BpiI	GAAGAC	1 cut(s)	300
BpuEI	CTTGAG	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	36, 324, 499
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse3DI	GCAATG	2 cut(s)	134, 309
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	3 cut(s)	36, 324, 499
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	2 cut(s)	134, 309
BseXI	GCAGC	3 cut(s)	163, 380, 571
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	2 cut(s)	486, 506
BshNI	GGYRCC	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	410, 524
BslI	CCNNNNNNNGG	1 cut(s)	37
BsnI	GGCC	2 cut(s)	486, 506
Bsp1407I	TGTACA	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	40, 118
Bsp19I	CCATGG	1 cut(s)	499
BspANI	GGCC	2 cut(s)	486, 506
BspLI	GGNNCC	3 cut(s)	201, 340, 505
BspPI	GGATC	2 cut(s)	48, 126
BspT107I	GGYRCC	1 cut(s)	338
BsrDI	GCAATG	2 cut(s)	134, 309
BsrGI	TGTACA	1 cut(s)	279
BssECI	CCNNGG	3 cut(s)	36, 324, 499
BssMI	GATC	2 cut(s)	40, 118
BssT1I	CCWWGG	2 cut(s)	324, 499
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	2 cut(s)	97, 296
Bst6I	CTCTTC	2 cut(s)	18, 81
BstAUI	TGTACA	1 cut(s)	279
BstC8I	GCNNGC	2 cut(s)	141, 243
BstDEI	CTNAG	1 cut(s)	414
BstDSI	CCRYGG	2 cut(s)	36, 499
BstKTI	GATC	2 cut(s)	43, 121
BstMBI	GATC	2 cut(s)	40, 118
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 149
BstNI	CCWGG	1 cut(s)	537
BstSCI	CCNGG	1 cut(s)	535
BstSFI	CTRYAG	2 cut(s)	93, 210
BstV1I	GCAGC	3 cut(s)	163, 380, 571
BstV2I	GAAGAC	1 cut(s)	300
BstX2I	RGATCY	2 cut(s)	40, 118
BstXI	CCANNNNNNTGG	1 cut(s)	401
BstYI	RGATCY	2 cut(s)	40, 118
BsuRI	GGCC	2 cut(s)	486, 506
BtgI	CCRYGG	2 cut(s)	36, 499
Cac8I	GCNNGC	2 cut(s)	141, 243
Cfr13I	GGNCC	3 cut(s)	321, 504, 682
Csp6I	GTAC	2 cut(s)	280, 297
CviAII	CATG	3 cut(s)	453, 500, 553
CviJI	RGCY	9 cut(s)	30, 143, 263, 400, 413, 486, 506, 523, 562
CviKI_1	RGCY	9 cut(s)	30, 143, 263, 400, 413, 486, 506, 523, 562
CviQI	GTAC	2 cut(s)	280, 297
DdeI	CTNAG	1 cut(s)	414
DpnI	GATC	2 cut(s)	42, 120
DpnII	GATC	2 cut(s)	40, 118
Eam1104I	CTCTTC	2 cut(s)	18, 81
EarI	CTCTTC	2 cut(s)	18, 81
Eco130I	CCWWGG	2 cut(s)	324, 499
Eco147I	AGGCCT	1 cut(s)	486
Eco47I	GGWCC	2 cut(s)	321, 682
Eco57I	CTGAAG	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	504
EcoRII	CCWGG	1 cut(s)	535
EcoT14I	CCWWGG	2 cut(s)	324, 499
ErhI	CCWWGG	2 cut(s)	324, 499
FaeI	CATG	3 cut(s)	456, 503, 556
FatI	CATG	3 cut(s)	452, 499, 552
Fnu4HI	GCNGC	3 cut(s)	177, 369, 560
Fsp4HI	GCNGC	3 cut(s)	177, 369, 560
FspBI	CTAG	1 cut(s)	488
GluI	GCNGC	3 cut(s)	177, 369, 560
HaeIII	GGCC	2 cut(s)	486, 506
HapII	CCGG	2 cut(s)	410, 524
Hin1II	CATG	3 cut(s)	456, 503, 556
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	1 cut(s)	433
HpaII	CCGG	2 cut(s)	410, 524
HphI	GGTGA	1 cut(s)	631
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	2 cut(s)	81, 476
Hpy188III	TCNNGA	2 cut(s)	394, 676
Hpy8I	GTNNAC	1 cut(s)	350
HpyAV	CCTTC	2 cut(s)	476, 673
HpyCH4III	ACNGT	2 cut(s)	97, 296
HpyCH4V	TGCA	8 cut(s)	111, 134, 139, 152, 245, 302, 333, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 149
HpyF3I	CTNAG	1 cut(s)	414
Hsp92II	CATG	3 cut(s)	456, 503, 556
Kzo9I	GATC	2 cut(s)	40, 118
Lsp1109I	GCAGC	3 cut(s)	163, 380, 571
LweI	GCATC	2 cut(s)	72, 228
MaeI	CTAG	1 cut(s)	488
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	2 cut(s)	42, 120
MboI	GATC	2 cut(s)	40, 118
MboII	GAAGA	4 cut(s)	35, 68, 247, 300
MflI	RGATCY	2 cut(s)	40, 118
MluCI	AATT	7 cut(s)	100, 129, 192, 268, 387, 464, 597
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	3 cut(s)	238, 460, 674
MroXI	GAANNNNTTC	1 cut(s)	531
MseI	TTAA	3 cut(s)	99, 429, 462
MspI	CCGG	2 cut(s)	410, 524
MspR9I	CCNGG	1 cut(s)	537
MvaI	CCWGG	1 cut(s)	537
MwoI	GCNNNNNNNGC	2 cut(s)	140, 149
NcoI	CCATGG	1 cut(s)	499
NdeII	GATC	2 cut(s)	40, 118
NlaIII	CATG	3 cut(s)	456, 503, 556
NlaIV	GGNNCC	3 cut(s)	201, 340, 505
NmuCI	GTSAC	1 cut(s)	272
PceI	AGGCCT	1 cut(s)	486
PdmI	GAANNNNTTC	1 cut(s)	531
PfeI	GAWTC	1 cut(s)	433
PflMI	CCANNNNNTGG	1 cut(s)	37
PfoI	TCCNGGA	1 cut(s)	535
PkrI	GCNGC	3 cut(s)	178, 370, 561
PsiI	TTATAA	1 cut(s)	605
Psp6I	CCWGG	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	3 cut(s)	201, 340, 505
PspPI	GGNCC	3 cut(s)	321, 504, 682
PsuI	RGATCY	2 cut(s)	40, 118
RsaI	GTAC	2 cut(s)	281, 298
RsaNI	GTAC	2 cut(s)	280, 297
SaqAI	TTAA	3 cut(s)	99, 429, 462
SatI	GCNGC	3 cut(s)	177, 369, 560
Sau3AI	GATC	2 cut(s)	40, 118
Sau96I	GGNCC	3 cut(s)	321, 504, 682
ScaI	AGTACT	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	537
SetI	ASST	7 cut(s)	145, 326, 340, 402, 621, 635, 684
SfaNI	GCATC	2 cut(s)	72, 228
SfcI	CTRYAG	2 cut(s)	93, 210
SinI	GGWCC	2 cut(s)	321, 682
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	7 cut(s)	100, 129, 192, 268, 387, 464, 597
SseBI	AGGCCT	1 cut(s)	486
SspMI	CTAG	1 cut(s)	488
StuI	AGGCCT	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	535
StyI	CCWWGG	2 cut(s)	324, 499
TaaI	ACNGT	2 cut(s)	97, 296
TaqI	TCGA	1 cut(s)	145
TasI	AATT	7 cut(s)	100, 129, 192, 268, 387, 464, 597
TatI	WGTACW	2 cut(s)	279, 296
TfiI	GAWTC	1 cut(s)	433
Tru1I	TTAA	3 cut(s)	99, 429, 462
Tru9I	TTAA	3 cut(s)	99, 429, 462
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	3 cut(s)	176, 368, 559
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	569
Van91I	CCANNNNNTGG	1 cut(s)	37
VpaK11BI	GGWCC	2 cut(s)	321, 682
XapI	RAATTY	1 cut(s)	464
XmnI	GAANNNNTTC	1 cut(s)	531
XspI	CTAG	1 cut(s)	488
ZrmI	AGTACT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.