Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000930

Physical Location & Seq

Genomic Coordinates Reverse (-)

332609 .. 338151

Gene Structure 5543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G002800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGAGGAACAAGGTGGATTCGAAGAGAACCAACCTGTGGATCTTTCCATTCACCCCTCTGGTATTGTTCCCACTCTTCAGAATATCGTATCTACGGTTTACTTGGGTTGCCGGCTGGATCTCAAGCAAATTGCGTTGCAAGCTCGGAACGCCGAATACAACCCCAAGCGTTTTGCTGCTGTTATTATGAGAATAAGAGAACCAAAAACTACAGCGTTGATATTTGCCTCTGGAAAGATGGTATGCACAGGTGCGAAAAGTGAACAGCAATCAAAACTGGCAGCAAGGAAGTATGCCCGAATCATCCAAAAGCTTGGATTTAGTGCTTCGTTTAAGGATTTCAAGATTCAAAATATTGTTGGCTCCTGTGATGTTAAATTCCCTATAAGACTTGAGGGTCTTGCATACTCTCATGGTGCCTTTTCAAGTTATGAGCCGGAACTTTTTCCAGGGCTGATATATCGCATGAAGCAGCCGAAGATTGTTCTTCTTATATTTGTGTCGGGGAAAATTGTTATTACGGGTGCAAAGGTAAGAGAAGACACGTATAAGGCCTTTGAGAACATATACCCCGTCCTTACAGAGTTCAGGAAGGTCCAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203

Pfam Domains

Protein Families

TBP

Protein Analysis

202

Amino Acids

22.6

Weight (kDa)

9.56

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55520 AT1G55520 AT1G55520 AT1G55520 AT3G13445 AT3G13445
fragaria_vesca	FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_3g32401 FvH4_3g32450 FvH4_3g45850 FvH4_3g45850 FvH4_4g21060 FvH4_6g12030
malus_domestica	MD03G1002100.v1.1 MD11G1002100.v1.1 MD12G1002700.v1.1 MD12G1176800.v1.1 MD14G1002000.v1.1
prunus_persica	Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.7G002800_v2.0.a1 Prupe.7G002800_v2.0.a1
pyrus_communis	pycom11g00190 pycom12g16680
rosa_chinensis	RchiOBHm_Chr3g0463861 RchiOBHm_Chr3g0497421 RchiOBHm_Chr5g0083961
rosa_laevigata	RLG00000022465 RLG00000024749 RLG00000035285 RLG00000037068
rosa_multiflora	Rmu_sc0004796.1_g000003
rosa_roxburghii	Rroxscaffold_1G00000660 Rroxscaffold_6G00388060 Rroxscaffold_6G00416240
rosa_rugosa	Rorug03G0068600 Rorug03G0292900 Rorug05G0488000 Rorug05G0488100
rosa_samantha	Rh3AG125700 Rh3AG336400 Rh3BG129800 Rh3BG374500 Rh3CG132300 Rh3CG370600 Rh3DG130900 Rh3DG371500 Rh3DG372800 Rh5AG540800 Rh5BG565800 Rh5CG587700 Rh5DG574400
rosa_wichuraiana	Rw3G010610 Rw3G029570 Rw5G050290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	396
AccB1I	GGYRCC	1 cut(s)	416
AccB7I	CCANNNNNTGG	1 cut(s)	37
AclWI	GGATC	2 cut(s)	48, 126
AcsI	RAATTY	1 cut(s)	377
AcuI	CTGAAG	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	37
AflIII	ACRYGT	1 cut(s)	543
AgsI	TTSAA	3 cut(s)	343, 350, 426
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	2 cut(s)	143, 313
AluI	AGCT	2 cut(s)	143, 313
AlwI	GGATC	2 cut(s)	48, 126
AoxI	GGCC	1 cut(s)	552
ApeKI	GCWGC	3 cut(s)	176, 281, 472
ApoI	RAATTY	1 cut(s)	377
Asp700I	GAANNNNTTC	1 cut(s)	444
AspS9I	GGNCC	1 cut(s)	595
AsuHPI	GGTGA	1 cut(s)	44
AsuII	TTCGAA	1 cut(s)	21
AvaII	GGWCC	1 cut(s)	595
BanI	GGYRCC	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	546
BbvI	GCAGC	3 cut(s)	163, 293, 484
BccI	CCATC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	450
BfmI	CTRYAG	1 cut(s)	210
BisI	GCNGC	3 cut(s)	177, 282, 473
BlsI	GCNGC	3 cut(s)	178, 283, 474
Bme1390I	CCNGG	1 cut(s)	450
Bme18I	GGWCC	1 cut(s)	595
BmgT120I	GGNCC	1 cut(s)	595
BmiI	GGNNCC	2 cut(s)	364, 418
BmrFI	CCNGG	1 cut(s)	450
BpiI	GAAGAC	1 cut(s)	546
Bpu14I	TTCGAA	1 cut(s)	21
BpuEI	CTTGAG	2 cut(s)	107, 413
BsaAI	YACGTR	1 cut(s)	546
BsaJI	CCNNGG	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse118I	RCCGGY	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	449
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseNI	ACTGG	1 cut(s)	282
BseXI	GCAGC	3 cut(s)	163, 293, 484
BshFI	GGCC	1 cut(s)	554
BshNI	GGYRCC	1 cut(s)	416
BsiSI	CCGG	2 cut(s)	112, 437
BslI	CCNNNNNNNGG	1 cut(s)	37
BsnI	GGCC	1 cut(s)	554
Bsp119I	TTCGAA	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	40, 118
BspANI	GGCC	1 cut(s)	554
BspLI	GGNNCC	2 cut(s)	364, 418
BspPI	GGATC	2 cut(s)	48, 126
BspT104I	TTCGAA	1 cut(s)	21
BspT107I	GGYRCC	1 cut(s)	416
BsrFI	RCCGGY	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	282
BssAI	RCCGGY	1 cut(s)	111
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	2 cut(s)	40, 118
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	2 cut(s)	18, 81
BstBAI	YACGTR	1 cut(s)	546
BstBI	TTCGAA	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	113, 141
BstF5I	GGATG	1 cut(s)	303
BstKTI	GATC	2 cut(s)	43, 121
BstMBI	GATC	2 cut(s)	40, 118
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 149
BstNI	CCWGG	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	448
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	3 cut(s)	163, 293, 484
BstV2I	GAAGAC	1 cut(s)	546
BstX2I	RGATCY	2 cut(s)	40, 118
BstXI	CCANNNNNNTGG	1 cut(s)	314
BstYI	RGATCY	2 cut(s)	40, 118
BsuRI	GGCC	1 cut(s)	554
BtsCI	GGATG	1 cut(s)	303
Cac8I	GCNNGC	2 cut(s)	113, 141
Cfr10I	RCCGGY	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	595
CviAII	CATG	2 cut(s)	413, 466
CviJI	RGCY	8 cut(s)	115, 143, 313, 363, 436, 454, 475, 554
CviKI_1	RGCY	8 cut(s)	115, 143, 313, 363, 436, 454, 475, 554
DpnI	GATC	2 cut(s)	42, 120
DpnII	GATC	2 cut(s)	40, 118
DrdI	GACNNNNNNGTC	1 cut(s)	396
DseDI	GACNNNNNNGTC	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	18, 81
EarI	CTCTTC	2 cut(s)	18, 81
Eco147I	AGGCCT	1 cut(s)	554
Eco47I	GGWCC	1 cut(s)	595
Eco57I	CTGAAG	1 cut(s)	62
EcoRII	CCWGG	1 cut(s)	448
FaeI	CATG	2 cut(s)	416, 469
FatI	CATG	2 cut(s)	412, 465
Fnu4HI	GCNGC	3 cut(s)	177, 282, 473
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	3 cut(s)	177, 282, 473
GluI	GCNGC	3 cut(s)	177, 282, 473
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	2 cut(s)	112, 437
Hin1II	CATG	2 cut(s)	416, 469
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	3 cut(s)	18, 300, 346
HpaII	CCGG	2 cut(s)	112, 437
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	2 cut(s)	100, 263
Hpy188I	TCNGA	2 cut(s)	81, 147
Hpy188III	TCNNGA	3 cut(s)	231, 343, 589
Hpy8I	GTNNAC	2 cut(s)	100, 263
HpyAV	CCTTC	1 cut(s)	586
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4IV	ACGT	1 cut(s)	545
HpyCH4V	TGCA	4 cut(s)	139, 246, 404, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 149
HpySE526I	ACGT	1 cut(s)	545
Hsp92II	CATG	2 cut(s)	416, 469
KroI	GCCGGC	1 cut(s)	111
KroNI	GCCGGC	1 cut(s)	113
Kzo9I	GATC	2 cut(s)	40, 118
LmnI	GCTCC	1 cut(s)	368
Lsp1109I	GCAGC	3 cut(s)	163, 293, 484
MaeII	ACGT	1 cut(s)	545
MalI	GATC	2 cut(s)	42, 120
MboI	GATC	2 cut(s)	40, 118
MboII	GAAGA	5 cut(s)	35, 68, 479, 490, 551
MflI	RGATCY	2 cut(s)	40, 118
MluCI	AATT	3 cut(s)	129, 377, 510
MnlI	CCTC	3 cut(s)	67, 238, 388
MroNI	GCCGGC	1 cut(s)	111
MroXI	GAANNNNTTC	1 cut(s)	444
MseI	TTAA	2 cut(s)	333, 375
MspI	CCGG	2 cut(s)	112, 437
MspR9I	CCNGG	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	2 cut(s)	140, 149
NaeI	GCCGGC	1 cut(s)	113
NdeII	GATC	2 cut(s)	40, 118
NgoMIV	GCCGGC	1 cut(s)	111
NlaIII	CATG	2 cut(s)	416, 469
NlaIV	GGNNCC	2 cut(s)	364, 418
NspV	TTCGAA	1 cut(s)	21
PceI	AGGCCT	1 cut(s)	554
PdiI	GCCGGC	1 cut(s)	113
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	3 cut(s)	18, 300, 346
PflMI	CCANNNNNTGG	1 cut(s)	37
PkrI	GCNGC	3 cut(s)	178, 283, 474
Ppu21I	YACGTR	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	2 cut(s)	364, 418
PspPI	GGNCC	1 cut(s)	595
PsrI	GAACNNNNNNTAC	2 cut(s)	140, 172
PsuI	RGATCY	2 cut(s)	40, 118
SaqAI	TTAA	2 cut(s)	333, 375
SatI	GCNGC	3 cut(s)	177, 282, 473
Sau3AI	GATC	2 cut(s)	40, 118
Sau96I	GGNCC	1 cut(s)	595
ScrFI	CCNGG	1 cut(s)	450
SetI	ASST	8 cut(s)	16, 37, 145, 253, 315, 534, 548, 597
SfcI	CTRYAG	1 cut(s)	210
SfuI	TTCGAA	1 cut(s)	21
SinI	GGWCC	1 cut(s)	595
SmlI	CTYRAG	2 cut(s)	122, 392
SmoI	CTYRAG	2 cut(s)	122, 392
Sse9I	AATT	3 cut(s)	129, 377, 510
SseBI	AGGCCT	1 cut(s)	554
SspI	AATATT	1 cut(s)	355
StuI	AGGCCT	1 cut(s)	554
StyD4I	CCNGG	1 cut(s)	448
TaaI	ACNGT	1 cut(s)	97
TaiI	ACGT	1 cut(s)	548
TaqI	TCGA	1 cut(s)	21
TasI	AATT	3 cut(s)	129, 377, 510
TfiI	GAWTC	3 cut(s)	18, 300, 346
Tru1I	TTAA	2 cut(s)	333, 375
Tru9I	TTAA	2 cut(s)	333, 375
TseI	GCWGC	3 cut(s)	176, 281, 472
TspDTI	ATGAA	1 cut(s)	482
Van91I	CCANNNNNTGG	1 cut(s)	37
VpaK11BI	GGWCC	1 cut(s)	595
XapI	RAATTY	1 cut(s)	377
XmnI	GAANNNNTTC	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.