Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000930

Physical Location & Seq

Genomic Coordinates Reverse (-)

45803865 .. 45809915

Gene Structure 6051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G029570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGGGAACAAGGTGGATTGGAAGAGAGCCAACCCGTCGATCTTTCCAAGCACCCATCTGGCATTGTTCCCACTCTTCAGAATATTGTATCGACAGTTAATTTGGATTGCAAGTTGGATCTTAAGCAAATTGCGTTGCAAGCTCGAAATGCAGAATACAATCCCAAGCGTTTTGCTGCTGTCATAATGAGAATAAGGGAACCAAAAACTACAGCTTTGATTTTTGCCTCTGGGAAGATGGTATGCACAGGTGCCAAAAGTGAACAGCAATCAAAGCTGGCAGCAAGGAAGTATGCTCGAATTATCCAGAAGCTTGGTTTTCCCGCTAAGTTTAAGGATTTTAAGATTCAAAACATTGTTGCCTCATGTGATGTTAAATTCCCAATCAGACTTGAAGGTCTTGCATACTCCCATGGTGCCTTTTCAAGTTATGAGCCAGAACTTTTTCCTGGACTAATATATCGCATGAAGCAGCCCAAGATTGTTCTTCTCATATTTGTGTCGGGGAAAATTGTTATTACGGGTGCAAAGGTGAGAGATGACACGTACAAGGCTTTTGAGCTGATATACCCTGTCCTTACAGAGTTCAGGAAGACGCACATCTCAAGGAGCTCAAGGGCTGTTGTGGGCAATGCCTGTGCAACATTTTTGCTTCTTTCTTGCATGGTGTTGAAGGCAGTAGATTTAGTTGTGAATACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203

Pfam Domains

Protein Families

TBP

Protein Analysis

233

Amino Acids

25.83

Weight (kDa)

9.66

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TBP	PF00352	24 - 105	2.8e-34	Transcription factor TFIID (or TATA-binding protein, TBP)
TBP	PF00352	113 - 196	1.4e-33	Transcription factor TFIID (or TATA-binding protein, TBP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55520 AT1G55520 AT1G55520 AT1G55520 AT3G13445 AT3G13445
fragaria_vesca	FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_3g32401 FvH4_3g32450 FvH4_3g45850 FvH4_3g45850 FvH4_4g21060 FvH4_6g12030
malus_domestica	MD03G1002100.v1.1 MD11G1002100.v1.1 MD12G1002700.v1.1 MD12G1176800.v1.1 MD14G1002000.v1.1
prunus_persica	Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.7G002800_v2.0.a1 Prupe.7G002800_v2.0.a1
pyrus_communis	pycom11g00190 pycom12g16680
rosa_chinensis	RchiOBHm_Chr3g0463861 RchiOBHm_Chr3g0497421 RchiOBHm_Chr5g0083961
rosa_laevigata	RLG00000022465 RLG00000024749 RLG00000035285 RLG00000037068
rosa_multiflora	Rmu_sc0004796.1_g000003
rosa_roxburghii	Rroxscaffold_1G00000660 Rroxscaffold_6G00388060 Rroxscaffold_6G00416240
rosa_rugosa	Rorug03G0068600 Rorug03G0292900 Rorug05G0488000 Rorug05G0488100
rosa_samantha	Rh3AG125700 Rh3AG336400 Rh3BG129800 Rh3BG374500 Rh3CG132300 Rh3CG370600 Rh3DG130900 Rh3DG371500 Rh3DG372800 Rh5AG540800 Rh5BG565800 Rh5CG587700 Rh5DG574400
rosa_wichuraiana	Rw3G010610 Rw3G029570 Rw5G050290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	396
AccB1I	GGYRCC	2 cut(s)	251, 416
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	377
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	1 cut(s)	548
AflII	CTTAAG	1 cut(s)	122
AflIII	ACRYGT	1 cut(s)	543
AgsI	TTSAA	4 cut(s)	350, 395, 426, 673
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	6 cut(s)	143, 215, 277, 313, 562, 612
AluI	AGCT	6 cut(s)	143, 215, 277, 313, 562, 612
Alw21I	GWGCWC	1 cut(s)	614
AlwI	GGATC	1 cut(s)	126
ApeKI	GCWGC	3 cut(s)	176, 281, 472
ApoI	RAATTY	1 cut(s)	377
ArsI	GACNNNNNNTTYG	2 cut(s)	85, 117
Asp700I	GAANNNNTTC	1 cut(s)	444
AsuHPI	GGTGA	1 cut(s)	544
BanI	GGYRCC	2 cut(s)	251, 416
BanII	GRGCYC	1 cut(s)	614
BbsI	GAAGAC	1 cut(s)	599
Bbv12I	GWGCWC	1 cut(s)	614
BbvI	GCAGC	3 cut(s)	163, 293, 484
BccI	CCATC	2 cut(s)	64, 232
BciT130I	CCWGG	1 cut(s)	450
BfmI	CTRYAG	1 cut(s)	210
BfrI	CTTAAG	1 cut(s)	122
BisI	GCNGC	3 cut(s)	177, 282, 473
BlsI	GCNGC	3 cut(s)	178, 283, 474
Bme1390I	CCNGG	1 cut(s)	450
BmiI	GGNNCC	3 cut(s)	201, 253, 418
BmrFI	CCNGG	1 cut(s)	450
BpiI	GAAGAC	1 cut(s)	599
BpuEI	CTTGAG	2 cut(s)	589, 598
BsaAI	YACGTR	1 cut(s)	546
BsaJI	CCNNGG	1 cut(s)	412
Bse3DI	GCAATG	1 cut(s)	637
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	412
BseMI	GCAATG	1 cut(s)	637
BseXI	GCAGC	3 cut(s)	163, 293, 484
BshNI	GGYRCC	2 cut(s)	251, 416
BsiHKAI	GWGCWC	1 cut(s)	614
Bsp1286I	GDGCHC	1 cut(s)	614
Bsp143I	GATC	2 cut(s)	40, 118
Bsp19I	CCATGG	1 cut(s)	412
BspACI	CCGC	1 cut(s)	324
BspLI	GGNNCC	3 cut(s)	201, 253, 418
BspPI	GGATC	1 cut(s)	126
BspT107I	GGYRCC	2 cut(s)	251, 416
BspTI	CTTAAG	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	637
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	2 cut(s)	40, 118
BssT1I	CCWWGG	1 cut(s)	412
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	2 cut(s)	18, 81
BstAFI	CTTAAG	1 cut(s)	122
BstBAI	YACGTR	1 cut(s)	546
BstC8I	GCNNGC	2 cut(s)	141, 279
BstDEI	CTNAG	1 cut(s)	327
BstDSI	CCRYGG	1 cut(s)	412
BstKTI	GATC	2 cut(s)	43, 121
BstMBI	GATC	2 cut(s)	40, 118
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 149, 274
BstNI	CCWGG	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	448
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	3 cut(s)	163, 293, 484
BstV2I	GAAGAC	1 cut(s)	599
BstX2I	RGATCY	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	118
BtgI	CCRYGG	1 cut(s)	412
Cac8I	GCNNGC	2 cut(s)	141, 279
CseI	GACGC	1 cut(s)	604
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	4 cut(s)	366, 413, 466, 664
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	2 cut(s)	42, 120
DpnII	GATC	2 cut(s)	40, 118
DrdI	GACNNNNNNGTC	1 cut(s)	396
DseDI	GACNNNNNNGTC	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	18, 81
EarI	CTCTTC	2 cut(s)	18, 81
Ecl136II	GAGCTC	1 cut(s)	612
Eco130I	CCWWGG	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	614
Eco53kI	GAGCTC	1 cut(s)	612
Eco57I	CTGAAG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	612
EcoRII	CCWGG	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	614
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	4 cut(s)	369, 416, 469, 667
FatI	CATG	4 cut(s)	365, 412, 465, 663
FauI	CCCGC	1 cut(s)	331
Fnu4HI	GCNGC	3 cut(s)	177, 282, 473
FriOI	GRGCYC	1 cut(s)	614
Fsp4HI	GCNGC	3 cut(s)	177, 282, 473
GluI	GCNGC	3 cut(s)	177, 282, 473
HgaI	GACGC	1 cut(s)	604
Hin1II	CATG	4 cut(s)	369, 416, 469, 667
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	1 cut(s)	346
HphI	GGTGA	1 cut(s)	544
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	2 cut(s)	81, 389
Hpy188III	TCNNGA	2 cut(s)	307, 589
Hpy8I	GTNNAC	1 cut(s)	263
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	2 cut(s)	389, 667
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4IV	ACGT	1 cut(s)	545
HpyCH4V	TGCA	8 cut(s)	111, 139, 152, 246, 404, 527, 641, 663
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 149, 274
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	1 cut(s)	545
Hsp92II	CATG	4 cut(s)	369, 416, 469, 667
Kzo9I	GATC	2 cut(s)	40, 118
LmnI	GCTCC	1 cut(s)	609
Lsp1109I	GCAGC	3 cut(s)	163, 293, 484
MaeII	ACGT	1 cut(s)	545
MalI	GATC	2 cut(s)	42, 120
MboI	GATC	2 cut(s)	40, 118
MboII	GAAGA	5 cut(s)	35, 68, 247, 479, 604
MflI	RGATCY	1 cut(s)	118
MhlI	GDGCHC	1 cut(s)	614
MluCI	AATT	5 cut(s)	100, 129, 300, 377, 510
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	2 cut(s)	238, 373
MroXI	GAANNNNTTC	1 cut(s)	444
MseI	TTAA	5 cut(s)	99, 123, 333, 342, 375
MslI	CAYNNNNRTG	1 cut(s)	497
MspCI	CTTAAG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	3 cut(s)	140, 149, 274
NcoI	CCATGG	1 cut(s)	412
NdeII	GATC	2 cut(s)	40, 118
NlaIII	CATG	4 cut(s)	369, 416, 469, 667
NlaIV	GGNNCC	3 cut(s)	201, 253, 418
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	1 cut(s)	346
PfoI	TCCNGGA	1 cut(s)	448
PkrI	GCNGC	3 cut(s)	178, 283, 474
Ppu21I	YACGTR	1 cut(s)	546
Psp124BI	GAGCTC	1 cut(s)	614
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	3 cut(s)	201, 253, 418
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
RseI	CAYNNNNRTG	1 cut(s)	497
SacI	GAGCTC	1 cut(s)	614
SaqAI	TTAA	5 cut(s)	99, 123, 333, 342, 375
SatI	GCNGC	3 cut(s)	177, 282, 473
Sau3AI	GATC	2 cut(s)	40, 118
ScrFI	CCNGG	1 cut(s)	450
SduI	GDGCHC	1 cut(s)	614
SfcI	CTRYAG	1 cut(s)	210
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	3 cut(s)	122, 604, 613
SmoI	CTYRAG	3 cut(s)	122, 604, 613
Sse9I	AATT	5 cut(s)	100, 129, 300, 377, 510
SsiI	CCGC	1 cut(s)	324
SspI	AATATT	1 cut(s)	85
SstI	GAGCTC	1 cut(s)	614
StyD4I	CCNGG	1 cut(s)	448
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	1 cut(s)	97
TaiI	ACGT	1 cut(s)	548
TaqI	TCGA	4 cut(s)	39, 92, 145, 298
TasI	AATT	5 cut(s)	100, 129, 300, 377, 510
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	5 cut(s)	99, 123, 333, 342, 375
Tru9I	TTAA	5 cut(s)	99, 123, 333, 342, 375
TseI	GCWGC	3 cut(s)	176, 281, 472
TspDTI	ATGAA	1 cut(s)	482
Vha464I	CTTAAG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	377
XmnI	GAANNNNTTC	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.