Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000930

Physical Location & Seq

Genomic Coordinates Forward (+)

169028 .. 171412

Gene Structure 2385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g00190.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGAGGCACAAGGTCTCAATCAGTACCAAGTCGATAAAACAAAGGGAATGGCAGAAGAAGGAAGCCATCCAGTAGTAGATCTGAGCAAGCACCCTTCTGGGATTGTCCCTACTCTCCAGAATATTGTCTCCACAGTCAATCTGGATTGCAAATTGGATCTTAAAGCCATTGCATTGAAAGCTCGTAATTCTGAATACAACCCAAAGCGTTTTGCAGCTGTGATCATGAGAATAAGAGAGCCAAAGACCACTGCCTTGATATTTGCATCCGGTAAAATGGTTTGTACGGGAGCTAAGAGTGAAGAACAATCGAGATTGGCAGCACGAAAGTATGCTCGAGTCATCCAGAAACTCGGTTTTCCAGCTAAGTTCAAAGATTTCAAAATCCAAAATATAGTTGGTTCTTGTGATGTAAAATTCCCCGTAAGACTTGAAGCCTTGGTAGTATCCCATTGTGCTTTCTCCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203

Pfam Domains

Protein Families

TBP

Protein Analysis

157

Amino Acids

17.21

Weight (kDa)

9.63

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55520 AT1G55520 AT1G55520 AT1G55520 AT3G13445 AT3G13445
fragaria_vesca	FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_3g32401 FvH4_3g32450 FvH4_3g45850 FvH4_3g45850 FvH4_4g21060 FvH4_6g12030
malus_domestica	MD03G1002100.v1.1 MD11G1002100.v1.1 MD12G1002700.v1.1 MD12G1176800.v1.1 MD14G1002000.v1.1
prunus_persica	Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.7G002800_v2.0.a1 Prupe.7G002800_v2.0.a1
pyrus_communis	pycom11g00190 pycom12g16680
rosa_chinensis	RchiOBHm_Chr3g0463861 RchiOBHm_Chr3g0497421 RchiOBHm_Chr5g0083961
rosa_laevigata	RLG00000022465 RLG00000024749 RLG00000035285 RLG00000037068
rosa_multiflora	Rmu_sc0004796.1_g000003
rosa_roxburghii	Rroxscaffold_1G00000660 Rroxscaffold_6G00388060 Rroxscaffold_6G00416240
rosa_rugosa	Rorug03G0068600 Rorug03G0292900 Rorug05G0488000 Rorug05G0488100
rosa_samantha	Rh3AG125700 Rh3AG336400 Rh3BG129800 Rh3BG374500 Rh3CG132300 Rh3CG370600 Rh3DG130900 Rh3DG371500 Rh3DG372800 Rh5AG540800 Rh5BG565800 Rh5CG587700 Rh5DG574400
rosa_wichuraiana	Rw3G010610 Rw3G029570 Rw5G050290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	416
AfaI	GTAC	2 cut(s)	26, 286
AgsI	TTSAA	4 cut(s)	178, 373, 382, 434
AluBI	AGCT	4 cut(s)	182, 218, 293, 365
AluI	AGCT	4 cut(s)	182, 218, 293, 365
Alw26I	GTCTC	2 cut(s)	20, 133
AlwI	GGATC	1 cut(s)	165
Ama87I	CYCGRG	1 cut(s)	336
ApeKI	GCWGC	2 cut(s)	215, 320
ApoI	RAATTY	1 cut(s)	416
AvaI	CYCGRG	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	227, 332
BccI	CCATC	1 cut(s)	75
BciVI	GTATCC	1 cut(s)	457
BclI	TGATCA	1 cut(s)	222
BcoDI	GTCTC	2 cut(s)	20, 133
BfuI	GTATCC	1 cut(s)	457
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	2 cut(s)	216, 321
BlsI	GCNGC	2 cut(s)	217, 322
BmeT110I	CYCGRG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	438
BsaWI	WCCGGW	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	438
BseGI	GGATG	3 cut(s)	67, 266, 342
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	71
BseXI	GCAGC	2 cut(s)	227, 332
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	92
BsmAI	GTCTC	2 cut(s)	20, 133
BsmFI	GGGAC	1 cut(s)	92
Bso31I	GGTCTC	1 cut(s)	20
BsoBI	CYCGRG	1 cut(s)	336
Bsp143I	GATC	3 cut(s)	79, 157, 222
BspCNI	CTCAG	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	225
BspPI	GGATC	1 cut(s)	165
BspTNI	GGTCTC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	438
BssMI	GATC	3 cut(s)	79, 157, 222
BssT1I	CCWWGG	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	3 cut(s)	83, 294, 366
BstF5I	GGATG	3 cut(s)	67, 266, 342
BstKTI	GATC	3 cut(s)	82, 160, 225
BstMAI	GTCTC	2 cut(s)	20, 133
BstMBI	GATC	3 cut(s)	79, 157, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	227, 332
BstX2I	RGATCY	2 cut(s)	79, 157
BstYI	RGATCY	2 cut(s)	79, 157
BsuI	GTATCC	1 cut(s)	457
BtsCI	GGATG	3 cut(s)	67, 266, 342
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	89
CciI	TCATGA	1 cut(s)	225
Csp6I	GTAC	2 cut(s)	25, 285
CviAII	CATG	1 cut(s)	226
CviJI	RGCY	8 cut(s)	66, 167, 182, 218, 241, 293, 365, 437
CviKI_1	RGCY	8 cut(s)	66, 167, 182, 218, 241, 293, 365, 437
CviQI	GTAC	2 cut(s)	25, 285
DdeI	CTNAG	3 cut(s)	83, 294, 366
DpnI	GATC	3 cut(s)	81, 159, 224
DpnII	GATC	3 cut(s)	79, 157, 222
Eco130I	CCWWGG	1 cut(s)	438
Eco31I	GGTCTC	1 cut(s)	20
Eco88I	CYCGRG	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	438
ErhI	CCWWGG	1 cut(s)	438
FaeI	CATG	1 cut(s)	229
FaiI	YATR	5 cut(s)	227, 333, 395, 467, 469
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	1 cut(s)	225
FauNDI	CATATG	1 cut(s)	467
FbaI	TGATCA	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	216, 321
FokI	GGATG	3 cut(s)	54, 253, 329
Fsp4HI	GCNGC	2 cut(s)	216, 321
GluI	GCNGC	2 cut(s)	216, 321
GsuI	CTGGAG	1 cut(s)	101
HapII	CCGG	1 cut(s)	270
Hin1II	CATG	1 cut(s)	229
HinfI	GANTC	1 cut(s)	339
HpaII	CCGG	1 cut(s)	270
Hpy188I	TCNGA	2 cut(s)	84, 193
Hpy188III	TCNNGA	5 cut(s)	118, 143, 226, 312, 346
HpyAV	CCTTC	2 cut(s)	53, 105
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	4 cut(s)	150, 173, 215, 266
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	3 cut(s)	83, 294, 366
Hsp92II	CATG	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	79, 157, 222
LmnI	GCTCC	1 cut(s)	290
LpnPI	CCDG	7 cut(s)	84, 84, 128, 131, 283, 359, 375
Lsp1109I	GCAGC	2 cut(s)	227, 332
LweI	GCATC	1 cut(s)	275
MalI	GATC	3 cut(s)	81, 159, 224
MboI	GATC	3 cut(s)	79, 157, 222
MboII	GAAGA	2 cut(s)	68, 314
MflI	RGATCY	2 cut(s)	79, 157
MluCI	AATT	3 cut(s)	152, 187, 416
MlyI	GAGTC	1 cut(s)	348
MseI	TTAA	1 cut(s)	162
MspA1I	CMGCKG	1 cut(s)	218
MspI	CCGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	1 cut(s)	179
NdeI	CATATG	1 cut(s)	467
NdeII	GATC	3 cut(s)	79, 157, 222
NlaIII	CATG	1 cut(s)	229
PaeR7I	CTCGAG	1 cut(s)	336
PagI	TCATGA	1 cut(s)	225
PkrI	GCNGC	2 cut(s)	217, 322
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PspXI	VCTCGAGB	1 cut(s)	336
PsuI	RGATCY	2 cut(s)	79, 157
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	2 cut(s)	26, 286
RsaNI	GTAC	2 cut(s)	25, 285
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	2 cut(s)	216, 321
Sau3AI	GATC	3 cut(s)	79, 157, 222
SchI	GAGTC	1 cut(s)	348
SetI	ASST	5 cut(s)	16, 184, 220, 295, 367
SfaNI	GCATC	1 cut(s)	275
Sfr274I	CTCGAG	1 cut(s)	336
SlaI	CTCGAG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	336
SmoI	CTYRAG	1 cut(s)	336
Sse9I	AATT	3 cut(s)	152, 187, 416
SspI	AATATT	1 cut(s)	124
StyI	CCWWGG	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	3 cut(s)	33, 311, 337
TasI	AATT	3 cut(s)	152, 187, 416
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	2 cut(s)	215, 320
TspRI	CASTG	1 cut(s)	256
XapI	RAATTY	1 cut(s)	416
XcmI	CCANNNNNNNNNTGG	2 cut(s)	139, 395
XhoI	CTCGAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.