Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000930

Physical Location & Seq

Genomic Coordinates Reverse (-)

67145225 .. 67145542

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0488000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCGCAAAACAGCAGCCAAGTCCAAAACTGTATCATCTGGCAGCCCATGGTACGGTGCAGACCGTGTCAAGTACTTGGGCCCATTTTCCGGTGAGGCTCCATCATACCTCACCGGAGAGTTTCCCGGGGACTACGGTTGGGACACTGCTGCGGATCCCGAGACCTTTGCCAAAAACCGTGAGCTTGAGGTCATCCATTCCAGATGGGCCATGCTTGGGGCCTTGGGCTGTGTTTTCCCCGAACTTCTAGCCCGCAATGGATTCAAGTTTGGCGAAGCTGTTTGGTTCAAGCCCAGATATTCAGTGAGGGTGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203

Pfam Domains

Protein Families

TBP

Protein Analysis

105

Amino Acids

11.64

Weight (kDa)

9.13

Isoelectric Point (pI)

19.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	33 - 97	2.3e-18	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55520 AT1G55520 AT1G55520 AT1G55520 AT3G13445 AT3G13445
fragaria_vesca	FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_3g32401 FvH4_3g32450 FvH4_3g45850 FvH4_3g45850 FvH4_4g21060 FvH4_6g12030
malus_domestica	MD03G1002100.v1.1 MD11G1002100.v1.1 MD12G1002700.v1.1 MD12G1176800.v1.1 MD14G1002000.v1.1
prunus_persica	Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.7G002800_v2.0.a1 Prupe.7G002800_v2.0.a1
pyrus_communis	pycom11g00190 pycom12g16680
rosa_chinensis	RchiOBHm_Chr3g0463861 RchiOBHm_Chr3g0497421 RchiOBHm_Chr5g0083961
rosa_laevigata	RLG00000022465 RLG00000024749 RLG00000035285 RLG00000037068
rosa_multiflora	Rmu_sc0004796.1_g000003
rosa_roxburghii	Rroxscaffold_1G00000660 Rroxscaffold_6G00388060 Rroxscaffold_6G00416240
rosa_rugosa	Rorug03G0068600 Rorug03G0292900 Rorug05G0488000 Rorug05G0488100
rosa_samantha	Rh3AG125700 Rh3AG336400 Rh3BG129800 Rh3BG374500 Rh3CG132300 Rh3CG370600 Rh3DG130900 Rh3DG371500 Rh3DG372800 Rh5AG540800 Rh5BG565800 Rh5CG587700 Rh5DG574400
rosa_wichuraiana	Rw3G010610 Rw3G029570 Rw5G050290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AciI	CCGC	2 cut(s)	152, 253
AclWI	GGATC	2 cut(s)	149, 162
AfaI	GTAC	2 cut(s)	53, 74
AfiI	CCNNNNNNNGG	3 cut(s)	53, 89, 216
AgsI	TTSAA	2 cut(s)	265, 289
AluBI	AGCT	2 cut(s)	184, 278
AluI	AGCT	2 cut(s)	184, 278
Alw26I	GTCTC	1 cut(s)	155
AlwI	GGATC	2 cut(s)	149, 162
Ama87I	CYCGRG	2 cut(s)	125, 158
AoxI	GGCC	3 cut(s)	79, 207, 219
ApaI	GGGCCC	1 cut(s)	83
ApeKI	GCWGC	3 cut(s)	14, 42, 149
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	4 cut(s)	79, 80, 207, 219
AsuC2I	CCSGG	2 cut(s)	126, 127
AsuHPI	GGTGA	2 cut(s)	103, 104
AvaI	CYCGRG	2 cut(s)	125, 158
BaeGI	GKGCMC	1 cut(s)	83
BamHI	GGATCC	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	83
BbvI	GCAGC	3 cut(s)	26, 54, 136
BccI	CCATC	2 cut(s)	109, 198
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BcnI	CCSGG	2 cut(s)	126, 127
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	2 cut(s)	248, 316
BisI	GCNGC	3 cut(s)	15, 43, 150
BlsI	GCNGC	3 cut(s)	16, 44, 151
BmcAI	AGTACT	1 cut(s)	74
Bme1390I	CCNGG	2 cut(s)	126, 127
BmeT110I	CYCGRG	2 cut(s)	125, 158
BmgT120I	GGNCC	4 cut(s)	79, 80, 207, 219
BmiI	GGNNCC	4 cut(s)	81, 99, 156, 220
BmrFI	CCNGG	2 cut(s)	126, 127
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	2 cut(s)	126, 127
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	4 cut(s)	47, 125, 126, 222
BsaWI	WCCGGW	2 cut(s)	89, 113
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 89, 216
Bse3DI	GCAATG	1 cut(s)	262
BseDI	CCNNGG	4 cut(s)	47, 125, 126, 222
BseGI	GGATG	1 cut(s)	192
BseLI	CCNNNNNNNGG	3 cut(s)	53, 89, 216
BseMI	GCAATG	1 cut(s)	262
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	3 cut(s)	26, 54, 136
BsgI	GTGCAG	1 cut(s)	78
BshFI	GGCC	3 cut(s)	81, 209, 221
BsiHKCI	CYCGRG	2 cut(s)	125, 158
BsiSI	CCGG	3 cut(s)	90, 114, 126
BslFI	GGGAC	2 cut(s)	143, 155
BslI	CCNNNNNNNGG	3 cut(s)	53, 89, 216
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	2 cut(s)	143, 155
BsnI	GGCC	3 cut(s)	81, 209, 221
Bso31I	GGTCTC	1 cut(s)	155
BsoBI	CYCGRG	2 cut(s)	125, 158
Bsp120I	GGGCCC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	154
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	2 cut(s)	152, 253
BspANI	GGCC	3 cut(s)	81, 209, 221
BspLI	GGNNCC	4 cut(s)	81, 99, 156, 220
BspPI	GGATC	2 cut(s)	149, 162
BspTNI	GGTCTC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	262
BssECI	CCNNGG	4 cut(s)	47, 125, 126, 222
BssMI	GATC	1 cut(s)	154
BssT1I	CCWWGG	2 cut(s)	47, 222
Bst4CI	ACNGT	5 cut(s)	31, 56, 65, 137, 179
BstC8I	GCNNGC	1 cut(s)	253
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	192
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	157
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	154
BstSCI	CCNGG	2 cut(s)	124, 125
BstSLI	GKGCMC	1 cut(s)	83
BstV1I	GCAGC	3 cut(s)	26, 54, 136
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BsuRI	GGCC	3 cut(s)	81, 209, 221
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	192
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	2 cut(s)	144, 309
Cac8I	GCNNGC	1 cut(s)	253
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	4 cut(s)	79, 80, 207, 219
Cfr9I	CCCGGG	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	52, 73
CviAII	CATG	2 cut(s)	48, 211
CviQI	GTAC	2 cut(s)	52, 73
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	47, 222
Eco24I	GRGCYC	1 cut(s)	83
Eco31I	GGTCTC	1 cut(s)	155
Eco88I	CYCGRG	2 cut(s)	125, 158
EcoO109I	RGGNCCY	1 cut(s)	219
EcoT14I	CCWWGG	2 cut(s)	47, 222
EcoT38I	GRGCYC	1 cut(s)	83
ErhI	CCWWGG	2 cut(s)	47, 222
FaeI	CATG	2 cut(s)	51, 214
FaiI	YATR	3 cut(s)	49, 106, 212
FaqI	GGGAC	2 cut(s)	143, 155
FatI	CATG	2 cut(s)	47, 210
FauI	CCCGC	1 cut(s)	260
Fnu4HI	GCNGC	3 cut(s)	15, 43, 150
FokI	GGATG	1 cut(s)	179
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	3 cut(s)	15, 43, 150
FspBI	CTAG	2 cut(s)	248, 316
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	3 cut(s)	15, 43, 150
HaeIII	GGCC	3 cut(s)	81, 209, 221
HapII	CCGG	3 cut(s)	90, 114, 126
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	51, 214
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	1 cut(s)	261
HpaII	CCGG	3 cut(s)	90, 114, 126
HphI	GGTGA	2 cut(s)	103, 104
Hpy188III	TCNNGA	2 cut(s)	158, 201
HpyCH4III	ACNGT	5 cut(s)	31, 56, 65, 137, 179
HpyCH4V	TGCA	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	51, 214
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	6 cut(s)	24, 103, 127, 139, 214, 307
Lsp1109I	GCAGC	3 cut(s)	26, 54, 136
MaeI	CTAG	2 cut(s)	248, 316
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	83
MnlI	CCTC	4 cut(s)	88, 119, 181, 300
MspI	CCGG	3 cut(s)	90, 114, 126
MspR9I	CCNGG	2 cut(s)	126, 127
NciI	CCSGG	2 cut(s)	126, 127
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	2 cut(s)	51, 214
NlaIV	GGNNCC	4 cut(s)	81, 99, 156, 220
NsbI	TGCGCA	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	261
PflFI	GACNNNGTC	1 cut(s)	65
PkrI	GCNGC	3 cut(s)	16, 44, 151
PspN4I	GGNNCC	4 cut(s)	81, 99, 156, 220
PspOMI	GGGCCC	1 cut(s)	79
PspPI	GGNCC	4 cut(s)	79, 80, 207, 219
PsuI	RGATCY	1 cut(s)	154
PsyI	GACNNNGTC	1 cut(s)	65
RsaI	GTAC	2 cut(s)	53, 74
RsaNI	GTAC	2 cut(s)	52, 73
SatI	GCNGC	3 cut(s)	15, 43, 150
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	4 cut(s)	79, 80, 207, 219
ScaI	AGTACT	1 cut(s)	74
ScrFI	CCNGG	2 cut(s)	126, 127
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	5 cut(s)	111, 167, 186, 192, 280
SmaI	CCCGGG	1 cut(s)	127
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SsiI	CCGC	2 cut(s)	152, 253
SspMI	CTAG	2 cut(s)	248, 316
StyD4I	CCNGG	2 cut(s)	124, 125
StyI	CCWWGG	2 cut(s)	47, 222
TaaI	ACNGT	5 cut(s)	31, 56, 65, 137, 179
TatI	WGTACW	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	261
TscAI	CASTG	2 cut(s)	151, 309
TseI	GCWGC	3 cut(s)	14, 42, 149
TspMI	CCCGGG	1 cut(s)	125
TspRI	CASTG	2 cut(s)	151, 309
Tth111I	GACNNNGTC	1 cut(s)	65
XmaI	CCCGGG	1 cut(s)	125
XspI	CTAG	2 cut(s)	248, 316
ZrmI	AGTACT	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.