Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000930

Physical Location & Seq

Genomic Coordinates Forward (+)

25713037 .. 25718392

Gene Structure 5356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1176800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAAGAACAAGGTGGATCTGAAGATAAGCAGCCTGTGGATCTTTCCATTCACCCCTCTGGCATTGTTCCCACTATTCATAATATTGTATCTACAGCTTTTTTGGGTTGCAAGCTGGATCTCAAGCAAATTGTGTTGCAAGCTCGGAATGCAGAGTACAATCCCAAGCGTTTTGCCGCGGTCATTATGAGAATAACGGAACCAAAAACTACAGCTTTGATATTTGCCTCTGGAAATATGGTATGCACAGGTGCGAAAAGTGAAGAGCAGTCAAAACTAGCAGCAAGGAAGTATGCTCGAATCATCCAAAAGCTTGGGTTTGCTGTTAAGTTTCAGAGATTCGAGATTAGAAATATTGTTGCGTCCTGTGACGTTAAATTCCCAATAAGACTTGAGGGCCTTGCATACTCCCATGGTGCCTTTTCAAGTTATGAGCCAGAAATTTTCCCAGGGCTGATATATCGCATGAAGATGGAGCAGAAGGAGCCACAGGAGTTGGAGCTGCCAAAGAAGAAGAAGAATGTTGTTCTTCTTATATTTGTGTCGGGGAAAATTGTTATTACTGGTGCAAAGGTGAGAGAGGACACGTATAAGGCGTTCGAGAACATGTACCCTGTCCTTACAGAGTTCAGGAAGGTCCAGCAACACTGTTTCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203

Pfam Domains

Protein Families

TBP

Protein Analysis

220

Amino Acids

24.82

Weight (kDa)

9.36

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TBP	PF00352	24 - 105	6.7e-32	Transcription factor TFIID (or TATA-binding protein, TBP)
TBP	PF00352	114 - 210	3.4e-28	Transcription factor TFIID (or TATA-binding protein, TBP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55520 AT1G55520 AT1G55520 AT1G55520 AT3G13445 AT3G13445
fragaria_vesca	FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_3g32401 FvH4_3g32450 FvH4_3g45850 FvH4_3g45850 FvH4_4g21060 FvH4_6g12030
malus_domestica	MD03G1002100.v1.1 MD11G1002100.v1.1 MD12G1002700.v1.1 MD12G1176800.v1.1 MD14G1002000.v1.1
prunus_persica	Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.7G002800_v2.0.a1 Prupe.7G002800_v2.0.a1
pyrus_communis	pycom11g00190 pycom12g16680
rosa_chinensis	RchiOBHm_Chr3g0463861 RchiOBHm_Chr3g0497421 RchiOBHm_Chr5g0083961
rosa_laevigata	RLG00000022465 RLG00000024749 RLG00000035285 RLG00000037068
rosa_multiflora	Rmu_sc0004796.1_g000003
rosa_roxburghii	Rroxscaffold_1G00000660 Rroxscaffold_6G00388060 Rroxscaffold_6G00416240
rosa_rugosa	Rorug03G0068600 Rorug03G0292900 Rorug05G0488000 Rorug05G0488100
rosa_samantha	Rh3AG125700 Rh3AG336400 Rh3BG129800 Rh3BG374500 Rh3CG132300 Rh3CG370600 Rh3DG130900 Rh3DG371500 Rh3DG372800 Rh5AG540800 Rh5BG565800 Rh5CG587700 Rh5DG574400
rosa_wichuraiana	Rw3G010610 Rw3G029570 Rw5G050290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	416
AccII	CGCG	1 cut(s)	179
AciI	CCGC	2 cut(s)	177, 179
AclWI	GGATC	3 cut(s)	25, 48, 126
AcsI	RAATTY	2 cut(s)	377, 441
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	2 cut(s)	158, 611
AflIII	ACRYGT	2 cut(s)	585, 606
AgsI	TTSAA	1 cut(s)	426
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	6 cut(s)	98, 115, 143, 215, 313, 502
AluI	AGCT	6 cut(s)	98, 115, 143, 215, 313, 502
AlwI	GGATC	3 cut(s)	25, 48, 126
AoxI	GGCC	1 cut(s)	397
ApeKI	GCWGC	3 cut(s)	31, 281, 502
ApoI	RAATTY	2 cut(s)	377, 441
AspS9I	GGNCC	2 cut(s)	397, 637
AsuHPI	GGTGA	2 cut(s)	44, 586
AvaII	GGWCC	1 cut(s)	637
BanI	GGYRCC	1 cut(s)	416
BbvI	GCAGC	3 cut(s)	43, 293, 489
BccI	CCATC	1 cut(s)	466
BciT130I	CCWGG	1 cut(s)	450
BfaI	CTAG	1 cut(s)	278
BfmI	CTRYAG	2 cut(s)	93, 210
BisI	GCNGC	4 cut(s)	32, 177, 282, 503
BlsI	GCNGC	4 cut(s)	33, 178, 283, 504
Bme1390I	CCNGG	1 cut(s)	450
Bme18I	GGWCC	1 cut(s)	637
BmgT120I	GGNCC	2 cut(s)	397, 637
BmiI	GGNNCC	3 cut(s)	201, 418, 486
BmrFI	CCNGG	1 cut(s)	450
BpuEI	CTTGAG	2 cut(s)	107, 413
BsaAI	YACGTR	1 cut(s)	588
BsaJI	CCNNGG	4 cut(s)	177, 412, 448, 449
Bse1I	ACTGG	2 cut(s)	568, 655
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	4 cut(s)	177, 412, 448, 449
BseGI	GGATG	1 cut(s)	303
BseNI	ACTGG	2 cut(s)	568, 655
BseXI	GCAGC	3 cut(s)	43, 293, 489
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	1 cut(s)	399
BshNI	GGYRCC	1 cut(s)	416
BsmI	GAATGC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	399
Bsp143I	GATC	3 cut(s)	17, 40, 118
Bsp19I	CCATGG	1 cut(s)	412
BspACI	CCGC	2 cut(s)	177, 179
BspANI	GGCC	1 cut(s)	399
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	3 cut(s)	201, 418, 486
BspPI	GGATC	3 cut(s)	25, 48, 126
BspQI	GCTCTTC	1 cut(s)	258
BspT107I	GGYRCC	1 cut(s)	416
BsrI	ACTGG	2 cut(s)	568, 655
BssECI	CCNNGG	4 cut(s)	177, 412, 448, 449
BssMI	GATC	3 cut(s)	17, 40, 118
BssT1I	CCWWGG	1 cut(s)	412
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	650
Bst6I	CTCTTC	1 cut(s)	258
BstBAI	YACGTR	1 cut(s)	588
BstC8I	GCNNGC	2 cut(s)	113, 141
BstDSI	CCRYGG	2 cut(s)	177, 412
BstF5I	GGATG	1 cut(s)	303
BstFNI	CGCG	1 cut(s)	179
BstKTI	GATC	3 cut(s)	20, 43, 121
BstMBI	GATC	3 cut(s)	17, 40, 118
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 484
BstNI	CCWGG	1 cut(s)	450
BstNSI	RCATGY	1 cut(s)	610
BstSCI	CCNGG	1 cut(s)	448
BstSFI	CTRYAG	2 cut(s)	93, 210
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	3 cut(s)	43, 293, 489
BstX2I	RGATCY	3 cut(s)	17, 40, 118
BstXI	CCANNNNNNTGG	1 cut(s)	314
BstYI	RGATCY	3 cut(s)	17, 40, 118
BsuRI	GGCC	1 cut(s)	399
BtgI	CCRYGG	2 cut(s)	177, 412
BtsCI	GGATG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	646
Cac8I	GCNNGC	2 cut(s)	113, 141
Cfr13I	GGNCC	2 cut(s)	397, 637
Cfr42I	CCGCGG	1 cut(s)	180
CseI	GACGC	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	157, 610
CspCI	CAANNNNNGTGG	2 cut(s)	477, 512
CviAII	CATG	3 cut(s)	413, 466, 607
CviQI	GTAC	2 cut(s)	157, 610
DpnI	GATC	3 cut(s)	19, 42, 120
DpnII	GATC	3 cut(s)	17, 40, 118
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	3 cut(s)	416, 469, 610
FatI	CATG	3 cut(s)	412, 465, 606
Fnu4HI	GCNGC	4 cut(s)	32, 177, 282, 503
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	4 cut(s)	32, 177, 282, 503
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	4 cut(s)	32, 177, 282, 503
HaeIII	GGCC	1 cut(s)	399
HgaI	GACGC	1 cut(s)	351
Hin1II	CATG	3 cut(s)	416, 469, 610
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	2 cut(s)	300, 339
HphI	GGTGA	2 cut(s)	44, 586
Hpy188I	TCNGA	3 cut(s)	22, 147, 336
Hpy188III	TCNNGA	4 cut(s)	231, 343, 601, 631
HpyAV	CCTTC	2 cut(s)	475, 628
HpyCH4III	ACNGT	1 cut(s)	650
HpyCH4IV	ACGT	2 cut(s)	372, 587
HpyCH4V	TGCA	6 cut(s)	111, 139, 152, 246, 404, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 484
HpySE526I	ACGT	2 cut(s)	372, 587
Hsp92II	CATG	3 cut(s)	416, 469, 610
KspI	CCGCGG	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	17, 40, 118
LguI	GCTCTTC	1 cut(s)	258
LmnI	GCTCC	3 cut(s)	475, 484, 499
Lsp1109I	GCAGC	3 cut(s)	43, 293, 489
MaeI	CTAG	1 cut(s)	278
MaeII	ACGT	2 cut(s)	372, 587
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	3 cut(s)	19, 42, 120
MboI	GATC	3 cut(s)	17, 40, 118
MboII	GAAGA	8 cut(s)	17, 35, 275, 481, 521, 523, 526, 529
MflI	RGATCY	3 cut(s)	17, 40, 118
MluCI	AATT	4 cut(s)	129, 377, 441, 552
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	4 cut(s)	67, 238, 388, 574
MseI	TTAA	2 cut(s)	327, 375
MslI	CAYNNNNRTG	1 cut(s)	470
MspA1I	CMGCKG	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	450
Mva1269I	GAATGC	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	450
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	149, 484
NcoI	CCATGG	1 cut(s)	412
NdeII	GATC	3 cut(s)	17, 40, 118
NlaIII	CATG	3 cut(s)	416, 469, 610
NlaIV	GGNNCC	3 cut(s)	201, 418, 486
NmuCI	GTSAC	1 cut(s)	368
NspI	RCATGY	1 cut(s)	610
PasI	CCCWGGG	1 cut(s)	449
PciI	ACATGT	1 cut(s)	606
PciSI	GCTCTTC	1 cut(s)	258
PcsI	WCGNNNNNNNCGW	1 cut(s)	593
PctI	GAATGC	1 cut(s)	154
PfeI	GAWTC	2 cut(s)	300, 339
PkrI	GCNGC	4 cut(s)	33, 178, 283, 504
Ppu21I	YACGTR	1 cut(s)	588
PscI	ACATGT	1 cut(s)	606
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	3 cut(s)	201, 418, 486
PspPI	GGNCC	2 cut(s)	397, 637
PsrI	GAACNNNNNNTAC	2 cut(s)	581, 613
PsuI	RGATCY	3 cut(s)	17, 40, 118
RsaI	GTAC	2 cut(s)	158, 611
RsaNI	GTAC	2 cut(s)	157, 610
RseI	CAYNNNNRTG	1 cut(s)	470
SacII	CCGCGG	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	258
SaqAI	TTAA	2 cut(s)	327, 375
SatI	GCNGC	4 cut(s)	32, 177, 282, 503
Sau3AI	GATC	3 cut(s)	17, 40, 118
Sau96I	GGNCC	2 cut(s)	397, 637
ScrFI	CCNGG	1 cut(s)	450
SfcI	CTRYAG	2 cut(s)	93, 210
Sfr303I	CCGCGG	1 cut(s)	180
SgrBI	CCGCGG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	637
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	2 cut(s)	122, 392
SmoI	CTYRAG	2 cut(s)	122, 392
Sse9I	AATT	4 cut(s)	129, 377, 441, 552
SsiI	CCGC	2 cut(s)	177, 179
SspI	AATATT	2 cut(s)	85, 355
SspMI	CTAG	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	448
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	1 cut(s)	650
TaiI	ACGT	2 cut(s)	375, 590
TaqI	TCGA	3 cut(s)	298, 342, 600
TasI	AATT	4 cut(s)	129, 377, 441, 552
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	300, 339
Tru1I	TTAA	2 cut(s)	327, 375
Tru9I	TTAA	2 cut(s)	327, 375
TscAI	CASTG	1 cut(s)	653
TseFI	GTSAC	1 cut(s)	368
TseI	GCWGC	3 cut(s)	31, 281, 502
Tsp45I	GTSAC	1 cut(s)	368
TspDTI	ATGAA	2 cut(s)	68, 482
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	653
VpaK11BI	GGWCC	1 cut(s)	637
XapI	RAATTY	2 cut(s)	377, 441
XceI	RCATGY	1 cut(s)	610
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.