Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0000930

Physical Location & Seq

Genomic Coordinates Reverse (-)

334241 .. 339026

Gene Structure 4786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1002000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGGGGATCAAGGTGGATTAGAAGAGAGCCAACCTGTGGATCTTTCCATTCACCCCTCTGGCATTGTTCCCACTCTTCAGAATATCGTATCTACAGTTAACTTGGATTGTAAATTGGATCTTAAGCAAATTGCGTTGCAAGCTCGAAATGCAGAGTACAACCCCAAGCGTTTTGCTGCTGTAATTATGAGAATAAGGGAGCCTAAAACTACAGCTTTGATTTTTGCCTCTGGGAAGATGGTATGCACTGGTGCAAAAAGTGAACAGCAATCAAAACTGGCAGCGAGGAAGTATGCCCGAATCATCCAGAAGCTTGGGTTTAATGCTAAGTTCAAGGATTTCAAGATTCAAAATATTGTTGGCTCCTGTGATGTTAAATTCCCGATAAGACTTGAGGGTCTTGCATACTCCCATGGTGCCTTTTCAAGTTATGAGCCAGAGCTTTTCCCGGGGCTGATATATCGAATGAAGCAGCCGAAGATTGTTCTTCTTATATTTGTGTCAGGGAAAATTGTTATTACGGGTGCAAAGGTGAGGGATGACACATACAAGGCCTTTGAAAACATATACCCTGTCCTTACAGAGTTCAGGAAGATCCTGCGTATACCAGACGGCGTGAGCATTTACTGGCTGGCAGACACATCTGAATGTAGCTTGTGGTGCTGTCGTAGGCATGCCTCCTGCTGCTGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203

Pfam Domains

Protein Families

TBP

Protein Analysis

232

Amino Acids

25.96

Weight (kDa)

9.26

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TBP	PF00352	24 - 105	2.7e-34	Transcription factor TFIID (or TATA-binding protein, TBP)
TBP	PF00352	113 - 196	9.8e-34	Transcription factor TFIID (or TATA-binding protein, TBP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55520 AT1G55520 AT1G55520 AT1G55520 AT3G13445 AT3G13445
fragaria_vesca	FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_3g32401 FvH4_3g32450 FvH4_3g45850 FvH4_3g45850 FvH4_4g21060 FvH4_6g12030
malus_domestica	MD03G1002100.v1.1 MD11G1002100.v1.1 MD12G1002700.v1.1 MD12G1176800.v1.1 MD14G1002000.v1.1
prunus_persica	Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.7G002800_v2.0.a1 Prupe.7G002800_v2.0.a1
pyrus_communis	pycom11g00190 pycom12g16680
rosa_chinensis	RchiOBHm_Chr3g0463861 RchiOBHm_Chr3g0497421 RchiOBHm_Chr5g0083961
rosa_laevigata	RLG00000022465 RLG00000024749 RLG00000035285 RLG00000037068
rosa_multiflora	Rmu_sc0004796.1_g000003
rosa_roxburghii	Rroxscaffold_1G00000660 Rroxscaffold_6G00388060 Rroxscaffold_6G00416240
rosa_rugosa	Rorug03G0068600 Rorug03G0292900 Rorug05G0488000 Rorug05G0488100
rosa_samantha	Rh3AG125700 Rh3AG336400 Rh3BG129800 Rh3BG374500 Rh3CG132300 Rh3CG370600 Rh3DG130900 Rh3DG371500 Rh3DG372800 Rh5AG540800 Rh5BG565800 Rh5CG587700 Rh5DG574400
rosa_wichuraiana	Rw3G010610 Rw3G029570 Rw5G050290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	396
AccB1I	GGYRCC	1 cut(s)	416
AccB7I	CCANNNNNTGG	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	604
AclWI	GGATC	4 cut(s)	15, 48, 126, 589
AcsI	RAATTY	1 cut(s)	377
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	37
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	5 cut(s)	334, 343, 350, 426, 560
AluBI	AGCT	5 cut(s)	143, 215, 313, 442, 654
AluI	AGCT	5 cut(s)	143, 215, 313, 442, 654
AlwI	GGATC	4 cut(s)	15, 48, 126, 589
Ama87I	CYCGRG	1 cut(s)	448
AoxI	GGCC	1 cut(s)	552
ApeKI	GCWGC	5 cut(s)	176, 281, 472, 684, 687
ApoI	RAATTY	1 cut(s)	377
AsuC2I	CCSGG	2 cut(s)	449, 450
AsuHPI	GGTGA	2 cut(s)	44, 544
AvaI	CYCGRG	1 cut(s)	448
BanI	GGYRCC	1 cut(s)	416
BbvI	GCAGC	5 cut(s)	163, 293, 484, 671, 674
BccI	CCATC	1 cut(s)	232
BceAI	ACGGC	1 cut(s)	628
BcnI	CCSGG	2 cut(s)	449, 450
BfmI	CTRYAG	2 cut(s)	93, 210
BfrI	CTTAAG	1 cut(s)	122
BisI	GCNGC	5 cut(s)	177, 282, 473, 685, 688
BlsI	GCNGC	5 cut(s)	178, 283, 474, 686, 689
Bme1390I	CCNGG	2 cut(s)	449, 450
BmeT110I	CYCGRG	1 cut(s)	448
BmiI	GGNNCC	3 cut(s)	201, 364, 418
BmrFI	CCNGG	2 cut(s)	449, 450
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	2 cut(s)	449, 450
BsaJI	CCNNGG	3 cut(s)	412, 448, 449
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	3 cut(s)	253, 282, 632
BseDI	CCNNGG	3 cut(s)	412, 448, 449
BseGI	GGATG	2 cut(s)	303, 544
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseNI	ACTGG	3 cut(s)	253, 282, 632
BseXI	GCAGC	5 cut(s)	163, 293, 484, 671, 674
BshFI	GGCC	1 cut(s)	554
BshNI	GGYRCC	1 cut(s)	416
BsiHKCI	CYCGRG	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	449
BslI	CCNNNNNNNGG	1 cut(s)	37
BsnI	GGCC	1 cut(s)	554
BsoBI	CYCGRG	1 cut(s)	448
Bsp143I	GATC	4 cut(s)	7, 40, 118, 594
Bsp19I	CCATGG	1 cut(s)	412
BspANI	GGCC	1 cut(s)	554
BspLI	GGNNCC	3 cut(s)	201, 364, 418
BspPI	GGATC	4 cut(s)	15, 48, 126, 589
BspT107I	GGYRCC	1 cut(s)	416
BspTI	CTTAAG	1 cut(s)	122
BsrI	ACTGG	3 cut(s)	253, 282, 632
BssECI	CCNNGG	3 cut(s)	412, 448, 449
BssMI	GATC	4 cut(s)	7, 40, 118, 594
BssNAI	GTATAC	1 cut(s)	605
BssT1I	CCWWGG	1 cut(s)	412
Bst1107I	GTATAC	1 cut(s)	605
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	2 cut(s)	18, 81
BstAFI	CTTAAG	1 cut(s)	122
BstC8I	GCNNGC	3 cut(s)	141, 633, 675
BstDEI	CTNAG	1 cut(s)	327
BstDSI	CCRYGG	1 cut(s)	412
BstF5I	GGATG	2 cut(s)	303, 544
BstKTI	GATC	4 cut(s)	10, 43, 121, 597
BstMBI	GATC	4 cut(s)	7, 40, 118, 594
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 149, 660
BstNSI	RCATGY	1 cut(s)	677
BstSCI	CCNGG	2 cut(s)	447, 448
BstSFI	CTRYAG	2 cut(s)	93, 210
BstV1I	GCAGC	5 cut(s)	163, 293, 484, 671, 674
BstX2I	RGATCY	3 cut(s)	40, 118, 594
BstXI	CCANNNNNNTGG	1 cut(s)	314
BstYI	RGATCY	3 cut(s)	40, 118, 594
BstZ17I	GTATAC	1 cut(s)	605
BsuRI	GGCC	1 cut(s)	554
BtgI	CCRYGG	1 cut(s)	412
BtsCI	GGATG	2 cut(s)	303, 544
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	3 cut(s)	141, 633, 675
Cfr9I	CCCGGG	1 cut(s)	448
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	2 cut(s)	413, 674
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	4 cut(s)	9, 42, 120, 596
DpnII	GATC	4 cut(s)	7, 40, 118, 594
DrdI	GACNNNNNNGTC	1 cut(s)	396
DseDI	GACNNNNNNGTC	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	18, 81
EarI	CTCTTC	2 cut(s)	18, 81
Eco130I	CCWWGG	1 cut(s)	412
Eco147I	AGGCCT	1 cut(s)	554
Eco57I	CTGAAG	1 cut(s)	62
Eco88I	CYCGRG	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	2 cut(s)	416, 677
FatI	CATG	2 cut(s)	412, 673
FblI	GTMKAC	1 cut(s)	604
Fnu4HI	GCNGC	5 cut(s)	177, 282, 473, 685, 688
FokI	GGATG	2 cut(s)	290, 551
Fsp4HI	GCNGC	5 cut(s)	177, 282, 473, 685, 688
GluI	GCNGC	5 cut(s)	177, 282, 473, 685, 688
HaeIII	GGCC	1 cut(s)	554
HapII	CCGG	1 cut(s)	449
Hin1II	CATG	2 cut(s)	416, 677
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	2 cut(s)	300, 346
HpaI	GTTAAC	1 cut(s)	100
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	2 cut(s)	44, 544
Hpy166II	GTNNAC	3 cut(s)	100, 263, 605
Hpy188I	TCNGA	2 cut(s)	81, 646
Hpy188III	TCNNGA	4 cut(s)	307, 343, 382, 589
Hpy8I	GTNNAC	3 cut(s)	100, 263, 605
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	6 cut(s)	139, 152, 246, 254, 404, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 149, 660
HpyF3I	CTNAG	1 cut(s)	327
Hsp92II	CATG	2 cut(s)	416, 677
KspAI	GTTAAC	1 cut(s)	100
Kzo9I	GATC	4 cut(s)	7, 40, 118, 594
LmnI	GCTCC	2 cut(s)	199, 368
Lsp1109I	GCAGC	5 cut(s)	163, 293, 484, 671, 674
MalI	GATC	4 cut(s)	9, 42, 120, 596
MboI	GATC	4 cut(s)	7, 40, 118, 594
MboII	GAAGA	6 cut(s)	35, 68, 247, 479, 490, 604
MflI	RGATCY	3 cut(s)	40, 118, 594
MluCI	AATT	5 cut(s)	113, 129, 183, 377, 510
MnlI	CCTC	6 cut(s)	67, 238, 279, 388, 528, 688
MseI	TTAA	4 cut(s)	99, 123, 321, 375
MslI	CAYNNNNRTG	1 cut(s)	646
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	449, 450
MwoI	GCNNNNNNNGC	3 cut(s)	140, 149, 660
NciI	CCSGG	2 cut(s)	449, 450
NcoI	CCATGG	1 cut(s)	412
NdeII	GATC	4 cut(s)	7, 40, 118, 594
NlaIII	CATG	2 cut(s)	416, 677
NlaIV	GGNNCC	3 cut(s)	201, 364, 418
NspI	RCATGY	1 cut(s)	677
PaeI	GCATGC	1 cut(s)	677
PceI	AGGCCT	1 cut(s)	554
PfeI	GAWTC	2 cut(s)	300, 346
PflMI	CCANNNNNTGG	1 cut(s)	37
PkrI	GCNGC	5 cut(s)	178, 283, 474, 686, 689
PspN4I	GGNNCC	3 cut(s)	201, 364, 418
PsuI	RGATCY	3 cut(s)	40, 118, 594
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	646
SaqAI	TTAA	4 cut(s)	99, 123, 321, 375
SatI	GCNGC	5 cut(s)	177, 282, 473, 685, 688
Sau3AI	GATC	4 cut(s)	7, 40, 118, 594
ScrFI	CCNGG	2 cut(s)	449, 450
SetI	ASST	8 cut(s)	16, 37, 145, 217, 315, 444, 534, 656
SfcI	CTRYAG	2 cut(s)	93, 210
SmaI	CCCGGG	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	646
SmlI	CTYRAG	2 cut(s)	122, 392
SmoI	CTYRAG	2 cut(s)	122, 392
SphI	GCATGC	1 cut(s)	677
Sse9I	AATT	5 cut(s)	113, 129, 183, 377, 510
SseBI	AGGCCT	1 cut(s)	554
SspI	AATATT	1 cut(s)	355
StuI	AGGCCT	1 cut(s)	554
StyD4I	CCNGG	2 cut(s)	447, 448
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	145, 463
TasI	AATT	5 cut(s)	113, 129, 183, 377, 510
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	2 cut(s)	300, 346
Tru1I	TTAA	4 cut(s)	99, 123, 321, 375
Tru9I	TTAA	4 cut(s)	99, 123, 321, 375
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	5 cut(s)	176, 281, 472, 684, 687
TspDTI	ATGAA	1 cut(s)	482
TspMI	CCCGGG	1 cut(s)	448
TspRI	CASTG	1 cut(s)	253
Van91I	CCANNNNNTGG	1 cut(s)	37
Vha464I	CTTAAG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	377
XceI	RCATGY	1 cut(s)	677
XmaI	CCCGGG	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.