RLG00000035285

TATA-box-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000930
Physical Location & Seq
Forward (+)
64274473 .. 64275230
758 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035285

Sequence Viewer

Length: 609 bp
ATGATGGAATCCCAGCACCCCTCTGGCGATATTGTTCCCACTGTTCAGAATGTGATATCTACGGTTAACTTGGACTGCAAGTTAGACCTTCATCGAATCACTGCGCTAGCTCAAAACGCAGAATTCTATCCCAACTGTTTGCATTCCGTGATATTGAGAGTGAGAGACCCAAAAGCCACAGTTTTGATTTTCGCTTCCGGGAAAATGGTGTGCAGCGGTGCCAAAAGCGAAGAGCTGTCGCAACTCGCAGCTAGGAAGTGCGCACGTACCATCCTGAAGATGGGTTTCAAGGCTAAGTTTAAGGACTTCAAGATCCAGAACATTGTTGCCAACTATGATGTTAGATTCCCGATCAGACTCGAAGGTCTTGCTTATGCAAACCCAGAGGTTACAAGTTATGAGCCGGAGTTTTTTCCAGGGCTGAAGTACCACATGAAGGAGTCCAAGGTTACTCTTCTTGTATTCGCGTCGGGAAAAGTTGTTATCACAGGTGCAAAGTGCAGAGAAAACTTGCATAAGGCCTTTGAGCTCATATACCCTGCCCTTAGAGAGTTTAGGAAAATCCTGCATAAGTGGCAACGAGATGAGTGCTGTGATTCTTGGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203
Pfam Domains
Protein Families
TBP

Protein Analysis

203

Amino Acids

23.0

Weight (kDa)

9.04

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBP PF00352 13 - 93 5.7e-24 Transcription factor TFIID (or TATA-binding protein, TBP)
TBP PF00352 102 - 185 3.3e-29 Transcription factor TFIID (or TATA-binding protein, TBP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 363
Acc16I TGCGCA 1 cut(s) 262
AccB1I GGYRCC 1 cut(s) 218
AccII CGCG 1 cut(s) 467
AciI CCGC 1 cut(s) 216
AclWI GGATC 1 cut(s) 307
AcsI RAATTY 1 cut(s) 122
AcuI CTGAAG 2 cut(s) 296, 443
AfaI GTAC 2 cut(s) 268, 428
AfiI CCNNNNNNNGG 2 cut(s) 280, 436
AgsI TTSAA 2 cut(s) 289, 310
AjnI CCWGG 1 cut(s) 415
AluBI AGCT 4 cut(s) 110, 235, 251, 529
AluI AGCT 4 cut(s) 110, 235, 251, 529
Alw21I GWGCWC 1 cut(s) 531
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 1 cut(s) 307
AoxI GGCC 1 cut(s) 519
ApeKI GCWGC 2 cut(s) 213, 248
ApoI RAATTY 1 cut(s) 122
AspLEI GCGC 2 cut(s) 106, 263
AsuC2I CCSGG 1 cut(s) 199
AsuNHI GCTAGC 1 cut(s) 106
BanI GGYRCC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 531
Bbv12I GWGCWC 1 cut(s) 531
BbvI GCAGC 2 cut(s) 225, 260
BccI CCATC 2 cut(s) 274, 278
BcgI CGANNNNNNTGC 4 cut(s) 350, 384, 570, 604
BciT130I CCWGG 1 cut(s) 417
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 2 cut(s) 107, 252
BisI GCNGC 2 cut(s) 214, 249
BlsI GCNGC 2 cut(s) 215, 250
Bme1390I CCNGG 2 cut(s) 199, 417
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 2 cut(s) 199, 417
BmtI GCTAGC 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 199
BsaAI YACGTR 1 cut(s) 266
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 416, 444
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 436
BseBI CCWGG 1 cut(s) 417
BseDI CCNNGG 2 cut(s) 416, 444
BseGI GGATG 1 cut(s) 270
BseLI CCNNNNNNNGG 2 cut(s) 280, 436
BseXI GCAGC 2 cut(s) 225, 260
BseYI CCCAGC 1 cut(s) 12
BsgI GTGCAG 2 cut(s) 232, 520
Bsh1236I CGCG 1 cut(s) 467
BshFI GGCC 1 cut(s) 521
BshNI GGYRCC 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 531
BsiSI CCGG 2 cut(s) 198, 404
BslI CCNNNNNNNGG 2 cut(s) 280, 436
BsmAI GTCTC 1 cut(s) 159
BsmI GAATGC 1 cut(s) 142
BsnI GGCC 1 cut(s) 521
Bso31I GGTCTC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 531
Bsp143I GATC 2 cut(s) 312, 351
BspACI CCGC 1 cut(s) 216
BspANI GGCC 1 cut(s) 521
BspFNI CGCG 1 cut(s) 467
BspLI GGNNCC 1 cut(s) 220
BspOI GCTAGC 1 cut(s) 110
BspPI GGATC 1 cut(s) 307
BspQI GCTCTTC 1 cut(s) 225
BspT107I GGYRCC 1 cut(s) 218
BspTNI GGTCTC 1 cut(s) 159
BssECI CCNNGG 2 cut(s) 416, 444
BssMI GATC 2 cut(s) 312, 351
BssT1I CCWWGG 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 417
Bst4CI ACNGT 4 cut(s) 43, 64, 137, 181
Bst6I CTCTTC 2 cut(s) 225, 459
BstBAI YACGTR 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 294, 545
BstF5I GGATG 1 cut(s) 270
BstFNI CGCG 1 cut(s) 467
BstHHI GCGC 2 cut(s) 106, 263
BstKTI GATC 2 cut(s) 315, 354
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 2 cut(s) 312, 351
BstMWI GCNNNNNNNGC 2 cut(s) 116, 574
BstNI CCWGG 1 cut(s) 417
BstSCI CCNGG 2 cut(s) 197, 415
BstUI CGCG 1 cut(s) 467
BstV1I GCAGC 2 cut(s) 225, 260
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
BsuRI GGCC 1 cut(s) 521
BtsCI GGATG 1 cut(s) 270
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 39, 99
Cac8I GCNNGC 1 cut(s) 108
CfoI GCGC 2 cut(s) 106, 263
CseI GACGC 1 cut(s) 456
Csp6I GTAC 2 cut(s) 267, 427
CviAII CATG 1 cut(s) 433
CviJI RGCY 9 cut(s) 110, 176, 235, 251, 293, 403, 421, 521, 529
CviKI_1 RGCY 9 cut(s) 110, 176, 235, 251, 293, 403, 421, 521, 529
CviQI GTAC 2 cut(s) 267, 427
DdeI CTNAG 2 cut(s) 294, 545
DpnI GATC 2 cut(s) 314, 353
DpnII GATC 2 cut(s) 312, 351
DrdI GACNNNNNNGTC 1 cut(s) 363
DseDI GACNNNNNNGTC 1 cut(s) 363
Eam1104I CTCTTC 2 cut(s) 225, 459
EarI CTCTTC 2 cut(s) 225, 459
Ecl136II GAGCTC 1 cut(s) 529
Eco130I CCWWGG 1 cut(s) 444
Eco147I AGGCCT 1 cut(s) 521
Eco24I GRGCYC 1 cut(s) 531
Eco31I GGTCTC 1 cut(s) 159
Eco32I GATATC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 529
Eco57I CTGAAG 2 cut(s) 296, 443
EcoICRI GAGCTC 1 cut(s) 529
EcoRI GAATTC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 415
EcoRV GATATC 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 444
EcoT38I GRGCYC 1 cut(s) 531
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 1 cut(s) 436
FaiI YATR 8 cut(s) 336, 375, 399, 434, 516, 533, 535, 570
FatI CATG 1 cut(s) 432
Fnu4HI GCNGC 2 cut(s) 214, 249
FokI GGATG 1 cut(s) 257
FriOI GRGCYC 1 cut(s) 531
Fsp4HI GCNGC 2 cut(s) 214, 249
FspAI RTGCGCAY 1 cut(s) 262
FspBI CTAG 2 cut(s) 107, 252
FspI TGCGCA 1 cut(s) 262
GlaI GCGC 2 cut(s) 105, 262
GluI GCNGC 2 cut(s) 214, 249
GsaI CCCAGC 1 cut(s) 16
HaeIII GGCC 1 cut(s) 521
HapII CCGG 2 cut(s) 198, 404
HgaI GACGC 1 cut(s) 456
HhaI GCGC 2 cut(s) 106, 263
Hin1II CATG 1 cut(s) 436
Hin6I GCGC 2 cut(s) 104, 261
HinP1I GCGC 2 cut(s) 104, 261
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 6 cut(s) 8, 96, 345, 357, 440, 596
HpaI GTTAAC 1 cut(s) 67
HpaII CCGG 2 cut(s) 198, 404
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 2 cut(s) 48, 356
Hpy188III TCNNGA 5 cut(s) 274, 310, 316, 349, 471
Hpy8I GTNNAC 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 472
HpyAV CCTTC 3 cut(s) 98, 356, 430
HpyCH4III ACNGT 4 cut(s) 43, 64, 137, 181
HpyCH4IV ACGT 1 cut(s) 265
HpyCH4V TGCA 8 cut(s) 78, 142, 213, 377, 494, 501, 514, 568
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 574
HpyF3I CTNAG 2 cut(s) 294, 545
HpySE526I ACGT 1 cut(s) 265
Hsp92II CATG 1 cut(s) 436
HspAI GCGC 2 cut(s) 104, 261
KspAI GTTAAC 1 cut(s) 67
Kzo9I GATC 2 cut(s) 312, 351
LguI GCTCTTC 1 cut(s) 225
Lsp1109I GCAGC 2 cut(s) 225, 260
MaeI CTAG 2 cut(s) 107, 252
MaeII ACGT 1 cut(s) 265
MaeIII GTNAC 2 cut(s) 388, 448
MalI GATC 2 cut(s) 314, 353
MboI GATC 2 cut(s) 312, 351
MboII GAAGA 3 cut(s) 242, 289, 446
MflI RGATCY 1 cut(s) 312
MhlI GDGCHC 1 cut(s) 531
MluCI AATT 1 cut(s) 122
MlyI GAGTC 2 cut(s) 351, 449
MnlI CCTC 2 cut(s) 31, 379
MseI TTAA 2 cut(s) 66, 300
MspA1I CMGCKG 1 cut(s) 216
MspI CCGG 2 cut(s) 198, 404
MspR9I CCNGG 2 cut(s) 199, 417
Mva1269I GAATGC 1 cut(s) 142
MvaI CCWGG 1 cut(s) 417
MvnI CGCG 1 cut(s) 467
MwoI GCNNNNNNNGC 2 cut(s) 116, 574
NciI CCSGG 1 cut(s) 199
NdeII GATC 2 cut(s) 312, 351
NheI GCTAGC 1 cut(s) 106
NlaIII CATG 1 cut(s) 436
NlaIV GGNNCC 1 cut(s) 220
NsbI TGCGCA 1 cut(s) 262
PceI AGGCCT 1 cut(s) 521
PciSI GCTCTTC 1 cut(s) 225
PctI GAATGC 1 cut(s) 142
PfeI GAWTC 4 cut(s) 8, 96, 345, 596
PfoI TCCNGGA 1 cut(s) 197
PkrI GCNGC 2 cut(s) 215, 250
PleI GAGTC 2 cut(s) 351, 448
PpsI GAGTC 2 cut(s) 351, 448
Ppu21I YACGTR 1 cut(s) 266
Psp124BI GAGCTC 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 415
PspFI CCCAGC 1 cut(s) 12
PspGI CCWGG 1 cut(s) 415
PspN4I GGNNCC 1 cut(s) 220
PsuI RGATCY 1 cut(s) 312
RsaI GTAC 2 cut(s) 268, 428
RsaNI GTAC 2 cut(s) 267, 427
SacI GAGCTC 1 cut(s) 531
SapI GCTCTTC 1 cut(s) 225
SaqAI TTAA 2 cut(s) 66, 300
SatI GCNGC 2 cut(s) 214, 249
Sau3AI GATC 2 cut(s) 312, 351
SchI GAGTC 2 cut(s) 351, 449
ScrFI CCNGG 2 cut(s) 199, 417
SduI GDGCHC 1 cut(s) 531
Sse9I AATT 1 cut(s) 122
SseBI AGGCCT 1 cut(s) 521
SsiI CCGC 1 cut(s) 216
SspMI CTAG 2 cut(s) 107, 252
SstI GAGCTC 1 cut(s) 531
StuI AGGCCT 1 cut(s) 521
StyD4I CCNGG 2 cut(s) 197, 415
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 4 cut(s) 43, 64, 137, 181
TaiI ACGT 1 cut(s) 268
TaqI TCGA 2 cut(s) 94, 360
TasI AATT 1 cut(s) 122
TfiI GAWTC 4 cut(s) 8, 96, 345, 596
Tru1I TTAA 2 cut(s) 66, 300
Tru9I TTAA 2 cut(s) 66, 300
TscAI CASTG 2 cut(s) 46, 106
TseI GCWGC 2 cut(s) 213, 248
TspDTI ATGAA 2 cut(s) 80, 449
TspGWI ACGGA 1 cut(s) 136
TspRI CASTG 2 cut(s) 46, 106
XapI RAATTY 1 cut(s) 122
XcmI CCANNNNNNNNNTGG 2 cut(s) 20, 277
XspI CTAG 2 cut(s) 107, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.