Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000930

Physical Location & Seq

Genomic Coordinates Reverse (-)

38031687 .. 38034741

Gene Structure 3055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCAGAAAAAGGGTTGGAGGAAACAGGGTTGGAGGCAAGCGGAAGCCAACCGGTTGATCTCAAGCAACATCCTTCCGGCATCGTCCCTACTCTTCAGAATATCGTTTCCACAGTCAATTTGGACTGCAAATTGGATCTTAAGACCATTGCATTGCGAGCTCGTAATGCAGAATACAATCCCAAGCGTTTTGCAGCTGTGATTATGAGAATAAGGGAGCCGAAAACTACTGCATTGATATTTGCATCTGGTAAAATGGTTTGTACAGGAGCCAAGAGTGAATCACAATCGAAATTGGCTGCACGGAAGTATGCTCGAATCATTCAGAAACTAGGTTTTGATGCCAAGTTCAAGGATTTTAAAATCCAGAACATAGTTGGTTCCTGTGATGTTAAATTCCCCATAAGACTCGAAGGTCTGGCATATTCCCACAATGCCTTTTCAAGTTATGAACCAGAACTGTTCCCTGGCTTGATTTACCGAATGAAACAACCAAAGATTGTGCTTCTTATCTTTGTATCTGGAAAAATTGTTCTCACAGGAGCGAAGGTAAGAAGTGAGACATACGAAGCCTTTGAGAACATATACCCAGTTCTTACAGAATTCAGGAAAAACCAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203

Pfam Domains

Protein Families

TBP

Protein Analysis

208

Amino Acids

23.15

Weight (kDa)

9.59

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TBP	PF00352	30 - 111	4.4e-34	Transcription factor TFIID (or TATA-binding protein, TBP)
TBP	PF00352	119 - 202	3.7e-33	Transcription factor TFIID (or TATA-binding protein, TBP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55520 AT1G55520 AT1G55520 AT1G55520 AT3G13445 AT3G13445
fragaria_vesca	FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_3g32401 FvH4_3g32450 FvH4_3g45850 FvH4_3g45850 FvH4_4g21060 FvH4_6g12030
malus_domestica	MD03G1002100.v1.1 MD11G1002100.v1.1 MD12G1002700.v1.1 MD12G1176800.v1.1 MD14G1002000.v1.1
prunus_persica	Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.7G002800_v2.0.a1 Prupe.7G002800_v2.0.a1
pyrus_communis	pycom11g00190 pycom12g16680
rosa_chinensis	RchiOBHm_Chr3g0463861 RchiOBHm_Chr3g0497421 RchiOBHm_Chr5g0083961
rosa_laevigata	RLG00000022465 RLG00000024749 RLG00000035285 RLG00000037068
rosa_multiflora	Rmu_sc0004796.1_g000003
rosa_roxburghii	Rroxscaffold_1G00000660 Rroxscaffold_6G00388060 Rroxscaffold_6G00416240
rosa_rugosa	Rorug03G0068600 Rorug03G0292900 Rorug05G0488000 Rorug05G0488100
rosa_samantha	Rh3AG125700 Rh3AG336400 Rh3BG129800 Rh3BG374500 Rh3CG132300 Rh3CG370600 Rh3DG130900 Rh3DG371500 Rh3DG372800 Rh5AG540800 Rh5BG565800 Rh5CG587700 Rh5DG574400
rosa_wichuraiana	Rw3G010610 Rw3G029570 Rw5G050290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	414
AciI	CCGC	1 cut(s)	42
AclWI	GGATC	1 cut(s)	144
AcsI	RAATTY	2 cut(s)	395, 602
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	1 cut(s)	265
AflII	CTTAAG	1 cut(s)	140
AgeI	ACCGGT	1 cut(s)	52
AgsI	TTSAA	2 cut(s)	352, 444
AjnI	CCWGG	1 cut(s)	466
AloI	GAACNNNNNNTCC	2 cut(s)	516, 548
AluBI	AGCT	2 cut(s)	161, 197
AluI	AGCT	2 cut(s)	161, 197
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	1 cut(s)	144
ApeKI	GCWGC	2 cut(s)	194, 299
ApoI	RAATTY	2 cut(s)	395, 602
AsiGI	ACCGGT	1 cut(s)	52
BanII	GRGCYC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	206, 286
BciT130I	CCWGG	1 cut(s)	468
BcoDI	GTCTC	1 cut(s)	554
BfaI	CTAG	1 cut(s)	332
BfrI	CTTAAG	1 cut(s)	140
BisI	GCNGC	2 cut(s)	195, 300
BlsI	GCNGC	2 cut(s)	196, 301
Bme1390I	CCNGG	1 cut(s)	468
BmiI	GGNNCC	3 cut(s)	219, 271, 382
BmrFI	CCNGG	1 cut(s)	468
BmrI	ACTGGG	1 cut(s)	584
BmsI	GCATC	3 cut(s)	90, 254, 331
BmuI	ACTGGG	1 cut(s)	584
BpuEI	CTTGAG	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	466
BsaWI	WCCGGW	1 cut(s)	52
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bse118I	RCCGGY	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	590
Bse3DI	GCAATG	2 cut(s)	147, 152
BseBI	CCWGG	1 cut(s)	468
BseDI	CCNNGG	1 cut(s)	466
BseGI	GGATG	1 cut(s)	70
BseMI	GCAATG	2 cut(s)	147, 152
BseNI	ACTGG	1 cut(s)	590
BseXI	GCAGC	2 cut(s)	206, 286
BsgI	GTGCAG	1 cut(s)	285
BshTI	ACCGGT	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	2 cut(s)	53, 78
BslFI	GGGAC	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	554
BsmFI	GGGAC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp1407I	TGTACA	1 cut(s)	263
Bsp143I	GATC	2 cut(s)	58, 136
BspACI	CCGC	1 cut(s)	42
BspLI	GGNNCC	3 cut(s)	219, 271, 382
BspPI	GGATC	1 cut(s)	144
BspTI	CTTAAG	1 cut(s)	140
BsrDI	GCAATG	2 cut(s)	147, 152
BsrFI	RCCGGY	1 cut(s)	52
BsrGI	TGTACA	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	590
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	466
BssMI	GATC	2 cut(s)	58, 136
Bst2UI	CCWGG	1 cut(s)	468
Bst4CI	ACNGT	2 cut(s)	115, 462
Bst6I	CTCTTC	1 cut(s)	99
BstAFI	CTTAAG	1 cut(s)	140
BstAUI	TGTACA	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	40, 159
BstF5I	GGATG	1 cut(s)	70
BstKTI	GATC	2 cut(s)	61, 139
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	2 cut(s)	58, 136
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 167
BstNI	CCWGG	1 cut(s)	468
BstSCI	CCNGG	1 cut(s)	466
BstV1I	GCAGC	2 cut(s)	206, 286
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	70
Cac8I	GCNNGC	2 cut(s)	40, 159
Cfr10I	RCCGGY	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	264
CspAI	ACCGGT	1 cut(s)	52
CviJI	RGCY	8 cut(s)	48, 161, 197, 220, 272, 299, 471, 572
CviKI_1	RGCY	8 cut(s)	48, 161, 197, 220, 272, 299, 471, 572
CviQI	GTAC	1 cut(s)	264
DpnI	GATC	2 cut(s)	60, 138
DpnII	GATC	2 cut(s)	58, 136
DraI	TTTAAA	1 cut(s)	361
DrdI	GACNNNNNNGTC	1 cut(s)	414
DseDI	GACNNNNNNGTC	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	161
Eco24I	GRGCYC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	602
EcoRII	CCWGG	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	163
FaiI	YATR	9 cut(s)	206, 312, 374, 404, 424, 450, 565, 584, 586
FaqI	GGGAC	1 cut(s)	71
Fnu4HI	GCNGC	2 cut(s)	195, 300
FokI	GGATG	1 cut(s)	57
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	2 cut(s)	195, 300
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	2 cut(s)	195, 300
HapII	CCGG	2 cut(s)	53, 78
HinfI	GANTC	3 cut(s)	281, 318, 408
HpaII	CCGG	2 cut(s)	53, 78
Hpy188I	TCNGA	2 cut(s)	99, 327
Hpy188III	TCNNGA	3 cut(s)	367, 522, 607
HpyAV	CCTTC	3 cut(s)	84, 407, 541
HpyCH4III	ACNGT	2 cut(s)	115, 462
HpyCH4V	TGCA	7 cut(s)	129, 152, 170, 194, 233, 245, 302
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 167
Kzo9I	GATC	2 cut(s)	58, 136
LmnI	GCTCC	3 cut(s)	217, 269, 542
Lsp1109I	GCAGC	2 cut(s)	206, 286
LweI	GCATC	3 cut(s)	90, 254, 331
MaeI	CTAG	1 cut(s)	332
MalI	GATC	2 cut(s)	60, 138
MboI	GATC	2 cut(s)	58, 136
MboII	GAAGA	1 cut(s)	86
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	6 cut(s)	118, 131, 293, 395, 528, 602
MlyI	GAGTC	1 cut(s)	402
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	2 cut(s)	13, 28
MseI	TTAA	3 cut(s)	141, 360, 393
MspA1I	CMGCKG	1 cut(s)	197
MspCI	CTTAAG	1 cut(s)	140
MspI	CCGG	2 cut(s)	53, 78
MspR9I	CCNGG	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	468
MwoI	GCNNNNNNNGC	2 cut(s)	158, 167
NdeII	GATC	2 cut(s)	58, 136
NlaIV	GGNNCC	3 cut(s)	219, 271, 382
PfeI	GAWTC	2 cut(s)	281, 318
PinAI	ACCGGT	1 cut(s)	52
PkrI	GCNGC	2 cut(s)	196, 301
PleI	GAGTC	1 cut(s)	402
PpsI	GAGTC	1 cut(s)	402
Psp124BI	GAGCTC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	466
PspGI	CCWGG	1 cut(s)	466
PspN4I	GGNNCC	3 cut(s)	219, 271, 382
PsuI	RGATCY	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
SacI	GAGCTC	1 cut(s)	163
SaqAI	TTAA	3 cut(s)	141, 360, 393
SatI	GCNGC	2 cut(s)	195, 300
Sau3AI	GATC	2 cut(s)	58, 136
SchI	GAGTC	1 cut(s)	402
ScrFI	CCNGG	1 cut(s)	468
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	5 cut(s)	163, 199, 337, 418, 552
SfaNI	GCATC	3 cut(s)	90, 254, 331
SmlI	CTYRAG	2 cut(s)	62, 140
SmoI	CTYRAG	2 cut(s)	62, 140
Sse9I	AATT	6 cut(s)	118, 131, 293, 395, 528, 602
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	1 cut(s)	332
SstI	GAGCTC	1 cut(s)	163
StyD4I	CCNGG	1 cut(s)	466
TaaI	ACNGT	2 cut(s)	115, 462
TaqI	TCGA	3 cut(s)	290, 316, 411
TasI	AATT	6 cut(s)	118, 131, 293, 395, 528, 602
TatI	WGTACW	1 cut(s)	263
TfiI	GAWTC	2 cut(s)	281, 318
Tru1I	TTAA	3 cut(s)	141, 360, 393
Tru9I	TTAA	3 cut(s)	141, 360, 393
TseI	GCWGC	2 cut(s)	194, 299
TspDTI	ATGAA	2 cut(s)	465, 500
TspGWI	ACGGA	1 cut(s)	319
Vha464I	CTTAAG	1 cut(s)	140
XapI	RAATTY	2 cut(s)	395, 602
XcmI	CCANNNNNNNNNTGG	2 cut(s)	118, 374
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.