Rroxscaffold_6G00416240

TATA-box-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000930
Physical Location & Seq
Forward (+)
38267337 .. 38269175
1839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00416240.1

Sequence Viewer

Length: 798 bp
ATGACGTTGGAGGCGAATTTGGCTGTTGCTGGTCGCCCTAAACCAACCATCGTGAATATAGTTTCCACCGTCAACTTGGGCTGCAAATTGGACCTAAAGAGGATTGCGAGCCGTGTCAGAAACGCAGAGTACAATCCGAAACGGTTTCATGCCATCATCATGCGAATCCGGGAACCCAAAACCACCTCTCTCATCTTCTCCTCCGGCAAGATGGTCGTCACGAGCGCCAAATCCATAGAAGAGACCAAATTTGCGGCGAGGAAGCACAGCCGAATCGTCCAGAAAGTAGGGCTTGACGTAGGGGCTAAGGTACAGTTTATGGATTTCAAGATTCAAAACATCGTGGCATCCTGCAATGTCAACTTTGCGGTCAGGCTTGAGACTCTTTCCTTCTCCGATACTACTCTTGGGTGTGCCTCGTACGAAGCCGAGATTTTCCCGGGGCTGATATACAGGGTTCTGAAGCCCAAGGTTGTCTTCCTCATCTTTGCGTCGGGGAACGTTGTCATCACTGGGGCCAAGAGCTTCGAGAATCACACGCTCAAGGCCTGGGAGCAAATGTACCCTCTTATTGCACAGCACCGGAGAAACTGCCCCGTCAACCTTGTAACATCACCGGTCCAAGAAAAAAGTGCACCTACAAGAGGAAGAAAAAGAGTGTTCCATCCAGTTCTGCCTCTGAGCCAGTTAGTTGCTTTTGATGTTGTTGAGCCTGTTCCTATTGTGCTGACTATTGCTGCAAGTGTCCCTACTGAATTTGAAATCCCTGTTGATACAGAATGTTATCGTATCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203
Pfam Domains
Protein Families
TBP

Protein Analysis

265

Amino Acids

29.45

Weight (kDa)

9.78

Isoelectric Point (pI)

33.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBP PF00352 15 - 95 1.5e-30 Transcription factor TFIID (or TATA-binding protein, TBP)
TBP PF00352 108 - 193 1.3e-25 Transcription factor TFIID (or TATA-binding protein, TBP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 254, 368
AclI AACGTT 1 cut(s) 501
AcsI RAATTY 3 cut(s) 16, 248, 755
AcuI CTGAAG 1 cut(s) 482
AfaI GTAC 4 cut(s) 131, 312, 422, 563
AfiI CCNNNNNNNGG 1 cut(s) 644
AgeI ACCGGT 1 cut(s) 616
AgsI TTSAA 3 cut(s) 328, 335, 761
AjnI CCWGG 1 cut(s) 548
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
AluBI AGCT 2 cut(s) 525, 795
AluI AGCT 2 cut(s) 525, 795
Alw21I GWGCWC 1 cut(s) 637
Alw26I GTCTC 2 cut(s) 236, 374
Alw44I GTGCAC 1 cut(s) 633
Ama87I CYCGRG 1 cut(s) 439
AoxI GGCC 2 cut(s) 516, 546
ApaLI GTGCAC 1 cut(s) 633
ApeKI GCWGC 2 cut(s) 81, 737
ApoI RAATTY 3 cut(s) 16, 248, 755
AsiGI ACCGGT 1 cut(s) 616
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 3 cut(s) 91, 516, 619
AsuC2I CCSGG 3 cut(s) 170, 440, 441
AsuHPI GGTGA 1 cut(s) 606
AvaI CYCGRG 1 cut(s) 439
AvaII GGWCC 2 cut(s) 91, 619
BaeGI GKGCMC 1 cut(s) 637
BauI CACGAG 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 469
Bbv12I GWGCWC 1 cut(s) 637
BbvI GCAGC 2 cut(s) 68, 724
BccI CCATC 4 cut(s) 56, 161, 205, 672
BceAI ACGGC 1 cut(s) 96
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 1 cut(s) 550
BcnI CCSGG 3 cut(s) 170, 440, 441
BcoDI GTCTC 2 cut(s) 236, 374
BfoI RGCGCY 1 cut(s) 228
BisI GCNGC 3 cut(s) 82, 255, 738
BlsI GCNGC 3 cut(s) 83, 256, 739
Bme1390I CCNGG 4 cut(s) 170, 440, 441, 550
Bme18I GGWCC 2 cut(s) 91, 619
BmeT110I CYCGRG 1 cut(s) 439
BmgT120I GGNCC 3 cut(s) 91, 516, 619
BmiI GGNNCC 2 cut(s) 174, 517
BmrFI CCNGG 4 cut(s) 170, 440, 441, 550
BmrI ACTGGG 1 cut(s) 522
BmsI GCATC 1 cut(s) 356
BmuI ACTGGG 1 cut(s) 522
BpiI GAAGAC 1 cut(s) 469
Bpu10I CCTNAGC 1 cut(s) 306
BpuEI CTTGAG 2 cut(s) 398, 527
BpuMI CCSGG 3 cut(s) 170, 440, 441
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 4 cut(s) 439, 440, 468, 549
BsaWI WCCGGW 2 cut(s) 582, 616
BsaXI ACNNNNNCTCC 2 cut(s) 545, 575
Bsc4I CCNNNNNNNGG 1 cut(s) 644
Bse118I RCCGGY 1 cut(s) 616
Bse1I ACTGG 3 cut(s) 517, 668, 685
Bse3DI GCAATG 1 cut(s) 361
BseBI CCWGG 1 cut(s) 550
BseDI CCNNGG 4 cut(s) 439, 440, 468, 549
BseGI GGATG 2 cut(s) 347, 664
BseLI CCNNNNNNNGG 1 cut(s) 644
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 671
BseNI ACTGG 3 cut(s) 517, 668, 685
BseRI GAGGAG 1 cut(s) 190
BseSI GKGCMC 1 cut(s) 637
BseXI GCAGC 2 cut(s) 68, 724
BshFI GGCC 2 cut(s) 518, 548
BshTI ACCGGT 1 cut(s) 616
BsiHKAI GWGCWC 1 cut(s) 637
BsiHKCI CYCGRG 1 cut(s) 439
BsiSI CCGG 5 cut(s) 169, 204, 440, 583, 617
BsiWI CGTACG 1 cut(s) 420
BslFI GGGAC 1 cut(s) 731
BslI CCNNNNNNNGG 1 cut(s) 644
BsmAI GTCTC 2 cut(s) 236, 374
BsmFI GGGAC 1 cut(s) 731
BsnI GGCC 2 cut(s) 518, 548
Bso31I GGTCTC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 439
Bsp1286I GDGCHC 1 cut(s) 637
BspACI CCGC 2 cut(s) 254, 368
BspANI GGCC 2 cut(s) 518, 548
BspCNI CTCAG 1 cut(s) 672
BspLI GGNNCC 2 cut(s) 174, 517
BspTNI GGTCTC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 361
BsrFI RCCGGY 1 cut(s) 616
BsrI ACTGG 3 cut(s) 517, 668, 685
BssAI RCCGGY 1 cut(s) 616
BssECI CCNNGG 4 cut(s) 439, 440, 468, 549
BssSI CACGAG 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 468
Bst2BI CACGAG 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 550
Bst4CI ACNGT 3 cut(s) 70, 144, 315
Bst6I CTCTTC 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 2 cut(s) 306, 680
BstENI CCTNNNNNAGG 1 cut(s) 642
BstF5I GGATG 2 cut(s) 347, 664
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 1 cut(s) 227
BstMAI GTCTC 2 cut(s) 236, 374
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstNI CCWGG 1 cut(s) 550
BstSCI CCNGG 4 cut(s) 168, 438, 439, 548
BstSLI GKGCMC 1 cut(s) 637
BstV1I GCAGC 2 cut(s) 68, 724
BstV2I GAAGAC 1 cut(s) 469
BsuRI GGCC 2 cut(s) 518, 548
BtsCI GGATG 2 cut(s) 347, 664
BtsIMutI CAGTG 1 cut(s) 510
Cac8I GCNNGC 1 cut(s) 109
CfoI GCGC 1 cut(s) 227
Cfr10I RCCGGY 1 cut(s) 616
Cfr13I GGNCC 3 cut(s) 91, 516, 619
Cfr9I CCCGGG 1 cut(s) 439
CseI GACGC 1 cut(s) 480
Csp6I GTAC 4 cut(s) 130, 311, 421, 562
CspAI ACCGGT 1 cut(s) 616
CviAII CATG 2 cut(s) 149, 160
CviQI GTAC 4 cut(s) 130, 311, 421, 562
DdeI CTNAG 2 cut(s) 306, 680
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 468
Eco147I AGGCCT 1 cut(s) 548
Eco31I GGTCTC 1 cut(s) 236
Eco47I GGWCC 2 cut(s) 91, 619
Eco57I CTGAAG 1 cut(s) 482
Eco88I CYCGRG 1 cut(s) 439
EcoNI CCTNNNNNAGG 1 cut(s) 642
EcoRII CCWGG 1 cut(s) 548
EcoT14I CCWWGG 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 2 cut(s) 152, 163
FaiI YATR 6 cut(s) 59, 150, 161, 236, 320, 451
FalI AAGNNNNNCTT 4 cut(s) 276, 308, 461, 493
FaqI GGGAC 1 cut(s) 731
FatI CATG 2 cut(s) 148, 159
Fnu4HI GCNGC 3 cut(s) 82, 255, 738
FokI GGATG 2 cut(s) 334, 651
Fsp4HI GCNGC 3 cut(s) 82, 255, 738
GlaI GCGC 1 cut(s) 226
GluI GCNGC 3 cut(s) 82, 255, 738
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 2 cut(s) 518, 548
HapII CCGG 5 cut(s) 169, 204, 440, 583, 617
HgaI GACGC 1 cut(s) 480
HhaI GCGC 1 cut(s) 227
Hin1II CATG 2 cut(s) 152, 163
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HincII GTYRAC 3 cut(s) 73, 361, 601
HindII GTYRAC 3 cut(s) 73, 361, 601
HinfI GANTC 5 cut(s) 165, 273, 331, 382, 532
HpaII CCGG 5 cut(s) 169, 204, 440, 583, 617
HphI GGTGA 1 cut(s) 606
Hpy166II GTNNAC 4 cut(s) 73, 361, 601, 635
Hpy188I TCNGA 5 cut(s) 119, 138, 397, 462, 681
Hpy188III TCNNGA 5 cut(s) 52, 220, 280, 328, 529
Hpy8I GTNNAC 4 cut(s) 73, 361, 601, 635
Hpy99I CGWCG 1 cut(s) 496
HpyAV CCTTC 1 cut(s) 400
HpyCH4III ACNGT 3 cut(s) 70, 144, 315
HpyCH4IV ACGT 3 cut(s) 5, 297, 501
HpyCH4V TGCA 5 cut(s) 84, 354, 575, 635, 740
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 2 cut(s) 306, 680
HpySE526I ACGT 3 cut(s) 5, 297, 501
Hsp92II CATG 2 cut(s) 152, 163
HspAI GCGC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 553
Lsp1109I GCAGC 2 cut(s) 68, 724
LweI GCATC 1 cut(s) 356
MaeII ACGT 3 cut(s) 5, 297, 501
MaeIII GTNAC 2 cut(s) 217, 607
MboII GAAGA 4 cut(s) 187, 251, 469, 660
MhlI GDGCHC 1 cut(s) 637
MluCI AATT 4 cut(s) 16, 86, 248, 755
MlyI GAGTC 1 cut(s) 376
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 5 cut(s) 169, 204, 440, 583, 617
MspR9I CCNGG 4 cut(s) 170, 440, 441, 550
MvaI CCWGG 1 cut(s) 550
MwoI GCNNNNNNNGC 1 cut(s) 20
NciI CCSGG 3 cut(s) 170, 440, 441
NlaIII CATG 2 cut(s) 152, 163
NlaIV GGNNCC 2 cut(s) 174, 517
NmeAIII GCCGAG 1 cut(s) 454
NmuCI GTSAC 1 cut(s) 217
PceI AGGCCT 1 cut(s) 548
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PfeI GAWTC 4 cut(s) 165, 273, 331, 532
Pfl23II CGTACG 1 cut(s) 420
PfoI TCCNGGA 1 cut(s) 168
PinAI ACCGGT 1 cut(s) 616
PkrI GCNGC 3 cut(s) 83, 256, 739
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
Psp1406I AACGTT 1 cut(s) 501
Psp6I CCWGG 1 cut(s) 548
PspGI CCWGG 1 cut(s) 548
PspLI CGTACG 1 cut(s) 420
PspN4I GGNNCC 2 cut(s) 174, 517
PspPI GGNCC 3 cut(s) 91, 516, 619
RsaI GTAC 4 cut(s) 131, 312, 422, 563
RsaNI GTAC 4 cut(s) 130, 311, 421, 562
RseI CAYNNNNRTG 1 cut(s) 158
SatI GCNGC 3 cut(s) 82, 255, 738
Sau96I GGNCC 3 cut(s) 91, 516, 619
SchI GAGTC 1 cut(s) 376
ScrFI CCNGG 4 cut(s) 170, 440, 441, 550
SduI GDGCHC 1 cut(s) 637
SfaNI GCATC 1 cut(s) 356
SinI GGWCC 2 cut(s) 91, 619
SmaI CCCGGG 1 cut(s) 441
SmiMI CAYNNNNRTG 1 cut(s) 158
SmlI CTYRAG 2 cut(s) 377, 542
SmoI CTYRAG 2 cut(s) 377, 542
Sse9I AATT 4 cut(s) 16, 86, 248, 755
SseBI AGGCCT 1 cut(s) 548
SsiI CCGC 2 cut(s) 254, 368
StuI AGGCCT 1 cut(s) 548
StyD4I CCNGG 4 cut(s) 168, 438, 439, 548
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 3 cut(s) 70, 144, 315
TaiI ACGT 3 cut(s) 8, 300, 504
TaqI TCGA 1 cut(s) 528
TasI AATT 4 cut(s) 16, 86, 248, 755
TatI WGTACW 1 cut(s) 129
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 4 cut(s) 165, 273, 331, 532
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 2 cut(s) 81, 737
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 1 cut(s) 137
TspMI CCCGGG 1 cut(s) 439
TspRI CASTG 1 cut(s) 517
VneI GTGCAC 1 cut(s) 633
VpaK11BI GGWCC 2 cut(s) 91, 619
XagI CCTNNNNNAGG 1 cut(s) 642
XapI RAATTY 3 cut(s) 16, 248, 755
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XmaI CCCGGG 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.