Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000930

Physical Location & Seq

Genomic Coordinates Forward (+)

24204687 .. 24205361

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGATGGAAACCCAGCAACCCTCTGCAAGCGAAATCGTTCCCACTATTCAGAACGTGATCTCTACGGTTAACCTGGGCTGCAAGTTAGATCTTCATCAAATCACTGTGCAGGCTCAAAACGCAGAATACAATCCCAAGCGTTTGCATTCCGTGATAATGAGAACGAGAGAGCCAAAGGCCACAGTTTTGATCTTCGCCTCTGGGAAAATGGTGTGCACTGGTGCCAAAAGCGAAGCCGAGTCGGAACTGGCAGCTAGGAAGTGTGTACGAACCATCCTGAAGATGGGTTTCGACGCCAAGTTTAATGATTTCAAGATCCAGAACATGGTTGCAAACTGTGATGTCAGATTTCCGATCAGACTTGAAGGTTTGGCTTATGCAAACCCCCAGTGTACGAGTTATGAGCCGGAACTTTTTCCAGGCTTGAGGTACCGCATGAAGGAACCCAAGATTACTCTTCTTGTATTCGCGTCGGGGAAACTAGTCATCACAGGTGCAAAGCGCAGAGAAGACATCCATAAGGCCTTTGAGGTCATATACCCTGCCCTTGGAGAGTTTAAGAAAGTATGCTATAGCAGTATAGCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203

Pfam Domains

Protein Families

TBP

Protein Analysis

197

Amino Acids

21.95

Weight (kDa)

9.23

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TBP	PF00352	14 - 94	4.2e-30	Transcription factor TFIID (or TATA-binding protein, TBP)
TBP	PF00352	103 - 185	8.7e-32	Transcription factor TFIID (or TATA-binding protein, TBP)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000930)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55520 AT1G55520 AT1G55520 AT1G55520 AT3G13445 AT3G13445
fragaria_vesca	FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_1g28010 FvH4_3g32401 FvH4_3g32450 FvH4_3g45850 FvH4_3g45850 FvH4_4g21060 FvH4_6g12030
malus_domestica	MD03G1002100.v1.1 MD11G1002100.v1.1 MD12G1002700.v1.1 MD12G1176800.v1.1 MD14G1002000.v1.1
prunus_persica	Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.6G001900_v2.0.a1 Prupe.7G002800_v2.0.a1 Prupe.7G002800_v2.0.a1
pyrus_communis	pycom11g00190 pycom12g16680
rosa_chinensis	RchiOBHm_Chr3g0463861 RchiOBHm_Chr3g0497421 RchiOBHm_Chr5g0083961
rosa_laevigata	RLG00000022465 RLG00000024749 RLG00000035285 RLG00000037068
rosa_multiflora	Rmu_sc0004796.1_g000003
rosa_roxburghii	Rroxscaffold_1G00000660 Rroxscaffold_6G00388060 Rroxscaffold_6G00416240
rosa_rugosa	Rorug03G0068600 Rorug03G0292900 Rorug05G0488000 Rorug05G0488100
rosa_samantha	Rh3AG125700 Rh3AG336400 Rh3BG129800 Rh3BG374500 Rh3CG132300 Rh3CG370600 Rh3DG130900 Rh3DG371500 Rh3DG372800 Rh5AG540800 Rh5BG565800 Rh5CG587700 Rh5DG574400
rosa_wichuraiana	Rw3G010610 Rw3G029570 Rw5G050290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	429
AccB1I	GGYRCC	2 cut(s)	221, 429
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccII	CGCG	1 cut(s)	470
AciI	CCGC	1 cut(s)	433
AclWI	GGATC	1 cut(s)	310
AcuI	CTGAAG	1 cut(s)	299
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	3 cut(s)	267, 394, 431
AfiI	CCNNNNNNNGG	4 cut(s)	283, 325, 439, 548
AgsI	TTSAA	2 cut(s)	313, 365
AhlI	ACTAGT	1 cut(s)	481
AjnI	CCWGG	2 cut(s)	72, 418
AluBI	AGCT	3 cut(s)	254, 584, 588
AluI	AGCT	3 cut(s)	254, 584, 588
Alw21I	GWGCWC	1 cut(s)	218
Alw44I	GTGCAC	1 cut(s)	214
AlwI	GGATC	1 cut(s)	310
AoxI	GGCC	2 cut(s)	177, 522
ApaLI	GTGCAC	1 cut(s)	214
ApeKI	GCWGC	2 cut(s)	78, 251
Asp700I	GAANNNNTTC	2 cut(s)	36, 414
Asp718I	GGTACC	1 cut(s)	429
AspLEI	GCGC	1 cut(s)	504
AsuNHI	GCTAGC	1 cut(s)	584
BaeGI	GKGCMC	1 cut(s)	218
BanI	GGYRCC	2 cut(s)	221, 429
BbsI	GAAGAC	1 cut(s)	516
Bbv12I	GWGCWC	1 cut(s)	218
BbvI	GCAGC	2 cut(s)	65, 263
BccI	CCATC	2 cut(s)	277, 281
BciT130I	CCWGG	2 cut(s)	74, 420
BcuI	ACTAGT	1 cut(s)	481
BfaI	CTAG	4 cut(s)	255, 482, 585, 589
BfmI	CTRYAG	1 cut(s)	571
BglII	AGATCT	1 cut(s)	88
BisI	GCNGC	2 cut(s)	79, 252
BlsI	GCNGC	2 cut(s)	80, 253
Bme1390I	CCNGG	2 cut(s)	74, 420
BmiI	GGNNCC	3 cut(s)	223, 431, 444
BmrFI	CCNGG	2 cut(s)	74, 420
BmrI	ACTGGG	1 cut(s)	382
BmtI	GCTAGC	1 cut(s)	588
BmuI	ACTGGG	1 cut(s)	382
BpiI	GAAGAC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	445
BsaBI	GATNNNNATC	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	2 cut(s)	73, 547
Bsc4I	CCNNNNNNNGG	4 cut(s)	283, 325, 439, 548
Bse1I	ACTGG	3 cut(s)	223, 252, 388
Bse8I	GATNNNNATC	1 cut(s)	93
BseBI	CCWGG	2 cut(s)	74, 420
BseDI	CCNNGG	2 cut(s)	73, 547
BseGI	GGATG	2 cut(s)	273, 513
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	4 cut(s)	283, 325, 439, 548
BseNI	ACTGG	3 cut(s)	223, 252, 388
BseSI	GKGCMC	1 cut(s)	218
BseXI	GCAGC	2 cut(s)	65, 263
BseYI	CCCAGC	1 cut(s)	12
BsgI	GTGCAG	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	470
BshFI	GGCC	2 cut(s)	179, 524
BshNI	GGYRCC	2 cut(s)	221, 429
BsiHKAI	GWGCWC	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	407
BslI	CCNNNNNNNGG	4 cut(s)	283, 325, 439, 548
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	2 cut(s)	179, 524
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp143I	GATC	5 cut(s)	57, 88, 189, 315, 354
BspACI	CCGC	1 cut(s)	433
BspANI	GGCC	2 cut(s)	179, 524
BspFNI	CGCG	1 cut(s)	470
BspLI	GGNNCC	3 cut(s)	223, 431, 444
BspOI	GCTAGC	1 cut(s)	588
BspPI	GGATC	1 cut(s)	310
BspT107I	GGYRCC	2 cut(s)	221, 429
BsrI	ACTGG	3 cut(s)	223, 252, 388
BssECI	CCNNGG	2 cut(s)	73, 547
BssMI	GATC	5 cut(s)	57, 88, 189, 315, 354
BssNI	GRCGYC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	547
Bst2UI	CCWGG	2 cut(s)	74, 420
Bst4CI	ACNGT	4 cut(s)	67, 106, 184, 338
Bst6I	CTCTTC	1 cut(s)	462
BstACI	GRCGYC	1 cut(s)	294
BstC8I	GCNNGC	3 cut(s)	28, 111, 586
BstF5I	GGATG	2 cut(s)	273, 513
BstFNI	CGCG	1 cut(s)	470
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	5 cut(s)	60, 91, 192, 318, 357
BstMBI	GATC	5 cut(s)	57, 88, 189, 315, 354
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	2 cut(s)	74, 420
BstSCI	CCNGG	2 cut(s)	72, 418
BstSFI	CTRYAG	1 cut(s)	571
BstSLI	GKGCMC	1 cut(s)	218
BstUI	CGCG	1 cut(s)	470
BstV1I	GCAGC	2 cut(s)	65, 263
BstV2I	GAAGAC	1 cut(s)	516
BstX2I	RGATCY	2 cut(s)	88, 315
BstYI	RGATCY	2 cut(s)	88, 315
BsuRI	GGCC	2 cut(s)	179, 524
BtsCI	GGATG	2 cut(s)	273, 513
BtsIMutI	CAGTG	3 cut(s)	102, 216, 395
Cac8I	GCNNGC	3 cut(s)	28, 111, 586
CfoI	GCGC	1 cut(s)	504
CseI	GACGC	2 cut(s)	302, 459
Csp6I	GTAC	3 cut(s)	266, 393, 430
CviAII	CATG	2 cut(s)	325, 436
CviQI	GTAC	3 cut(s)	266, 393, 430
DpnI	GATC	5 cut(s)	59, 90, 191, 317, 356
DpnII	GATC	5 cut(s)	57, 88, 189, 315, 354
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	547
Eco147I	AGGCCT	1 cut(s)	524
Eco57I	CTGAAG	1 cut(s)	299
EcoRII	CCWGG	2 cut(s)	72, 418
EcoT14I	CCWWGG	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	547
FaeI	CATG	2 cut(s)	328, 439
FatI	CATG	2 cut(s)	324, 435
Fnu4HI	GCNGC	2 cut(s)	79, 252
FokI	GGATG	2 cut(s)	260, 500
Fsp4HI	GCNGC	2 cut(s)	79, 252
FspBI	CTAG	4 cut(s)	255, 482, 585, 589
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	2 cut(s)	79, 252
GsaI	CCCAGC	1 cut(s)	16
HaeIII	GGCC	2 cut(s)	179, 524
HapII	CCGG	1 cut(s)	407
HgaI	GACGC	2 cut(s)	302, 459
HhaI	GCGC	1 cut(s)	504
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	2 cut(s)	328, 439
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HinfI	GANTC	1 cut(s)	239
HpaI	GTTAAC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	407
Hpy166II	GTNNAC	4 cut(s)	70, 216, 266, 393
Hpy188I	TCNGA	5 cut(s)	51, 244, 347, 354, 359
Hpy188III	TCNNGA	3 cut(s)	277, 313, 319
Hpy8I	GTNNAC	4 cut(s)	70, 216, 266, 393
Hpy99I	CGWCG	2 cut(s)	296, 475
HpyAV	CCTTC	2 cut(s)	359, 433
HpyCH4III	ACNGT	4 cut(s)	67, 106, 184, 338
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	8 cut(s)	26, 81, 109, 145, 216, 332, 380, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpySE526I	ACGT	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	328, 439
HspAI	GCGC	1 cut(s)	502
KpnI	GGTACC	1 cut(s)	433
KspAI	GTTAAC	1 cut(s)	70
Kzo9I	GATC	5 cut(s)	57, 88, 189, 315, 354
Lsp1109I	GCAGC	2 cut(s)	65, 263
MaeI	CTAG	4 cut(s)	255, 482, 585, 589
MaeII	ACGT	1 cut(s)	54
MalI	GATC	5 cut(s)	59, 90, 191, 317, 356
MboI	GATC	5 cut(s)	57, 88, 189, 315, 354
MboII	GAAGA	5 cut(s)	83, 184, 292, 449, 521
MflI	RGATCY	2 cut(s)	88, 315
MhlI	GDGCHC	1 cut(s)	218
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	4 cut(s)	31, 208, 420, 523
MroXI	GAANNNNTTC	2 cut(s)	36, 414
MseI	TTAA	3 cut(s)	69, 303, 558
MspI	CCGG	1 cut(s)	407
MspR9I	CCNGG	2 cut(s)	74, 420
Mva1269I	GAATGC	1 cut(s)	145
MvaI	CCWGG	2 cut(s)	74, 420
MvnI	CGCG	1 cut(s)	470
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	5 cut(s)	57, 88, 189, 315, 354
NheI	GCTAGC	1 cut(s)	584
NlaIII	CATG	2 cut(s)	328, 439
NlaIV	GGNNCC	3 cut(s)	223, 431, 444
NmeAIII	GCCGAG	1 cut(s)	262
PceI	AGGCCT	1 cut(s)	524
PctI	GAATGC	1 cut(s)	145
PdmI	GAANNNNTTC	2 cut(s)	36, 414
PflMI	CCANNNNNTGG	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	80, 253
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Psp6I	CCWGG	2 cut(s)	72, 418
PspFI	CCCAGC	1 cut(s)	12
PspGI	CCWGG	2 cut(s)	72, 418
PspN4I	GGNNCC	3 cut(s)	223, 431, 444
PsuI	RGATCY	2 cut(s)	88, 315
RsaI	GTAC	3 cut(s)	267, 394, 431
RsaNI	GTAC	3 cut(s)	266, 393, 430
SaqAI	TTAA	3 cut(s)	69, 303, 558
SatI	GCNGC	2 cut(s)	79, 252
Sau3AI	GATC	5 cut(s)	57, 88, 189, 315, 354
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	2 cut(s)	74, 420
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	9 cut(s)	57, 75, 256, 370, 431, 496, 534, 586, 590
SfcI	CTRYAG	1 cut(s)	571
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
SpeI	ACTAGT	1 cut(s)	481
SseBI	AGGCCT	1 cut(s)	524
SsiI	CCGC	1 cut(s)	433
SspMI	CTAG	4 cut(s)	255, 482, 585, 589
StuI	AGGCCT	1 cut(s)	524
StyD4I	CCNGG	2 cut(s)	72, 418
StyI	CCWWGG	1 cut(s)	547
TaaI	ACNGT	4 cut(s)	67, 106, 184, 338
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	291
Tru1I	TTAA	3 cut(s)	69, 303, 558
Tru9I	TTAA	3 cut(s)	69, 303, 558
TscAI	CASTG	3 cut(s)	109, 223, 395
TseI	GCWGC	2 cut(s)	78, 251
TspDTI	ATGAA	2 cut(s)	83, 452
TspGWI	ACGGA	1 cut(s)	139
TspRI	CASTG	3 cut(s)	109, 223, 395
Van91I	CCANNNNNTGG	1 cut(s)	325
VneI	GTGCAC	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XmnI	GAANNNNTTC	2 cut(s)	36, 414
XspI	CTAG	4 cut(s)	255, 482, 585, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.