FvH4_6g12030

TATA-box-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000930
Physical Location & Seq
Reverse (-)
7252470 .. 7253166
697 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12030.t1

Sequence Viewer

Length: 690 bp
ATGACGTTGGAGGCTAGTTTGGCTGTTGCTGATGGCCCTCCTGAACCAAAAATCGTGAATATAGTTTCCACCGTAAACTTGGACTGCAAACTAGACCTAAAGATGATCGCGATGAAGGCTCGAAACGCAGAGTACAACCCGAAACGGTTTCACGCCGTCATAATACGAATCAGGAAACCCAAAACCACCTCTCTCGTCTTCTCCTCCGGCAAGATGGTCGTCACCGGCGCCAAAAGCTACATAGAGTCTAAACAAGCGGCGTGGAAGTACTTTAACGTCGTCAAGAAAACAGGGTTTGAGGTAAGTTTCAAGGATTACAAGATTCAAAACATCGTGGCAAACTGCAAGCTCAACTATCCGATCAGGCTCGAGACTCTTGCGCACTCCGGGACTCTTGGGTTGGCCACGTACGAGGCTGAGATATTTCCGGGGTTGATATACAGGGTTCTGAAGCCCAAGGTTGTCTTCATTGTCTTTGCGTCCGGGAACATTATCATCACTGGGGCCAAGATCAAGGAGGACACGGACACAGCTTGGGAGCTAATGTACCCTCTTATTGCACAGCACGGAAGACCCGTCAACTTTGTACCATCTTCGATTGTAGCATCTCCGATCGAAGAAAAAAGTGCACCTAAAAGAGGAAAAAAGAGGGTGATTGAAGCATCTAGTTCTGCCTCTGGCTCAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko05016 ko05165 ko05166 ko05168 ko05169 ko05203 map03022 map05016 map05165 map05166 map05168 map05169 map05203
Pfam Domains
Protein Families
TBP

Protein Analysis

230

Amino Acids

25.2

Weight (kDa)

9.74

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBP PF00352 16 - 96 1.2e-29 Transcription factor TFIID (or TATA-binding protein, TBP)
TBP PF00352 105 - 188 2.9e-25 Transcription factor TFIID (or TATA-binding protein, TBP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 381
AccB1I GGYRCC 1 cut(s) 227
AccII CGCG 1 cut(s) 110
AciI CCGC 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 402
AcuI CTGAAG 1 cut(s) 470
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 5 cut(s) 134, 269, 410, 548, 588
AfiI CCNNNNNNNGG 1 cut(s) 638
AgsI TTSAA 3 cut(s) 310, 326, 659
AjuI GAANNNNNNNTTGG 2 cut(s) 449, 481
AluBI AGCT 4 cut(s) 237, 349, 533, 541
AluI AGCT 4 cut(s) 237, 349, 533, 541
Alw21I GWGCWC 1 cut(s) 631
Alw26I GTCTC 1 cut(s) 365
Alw44I GTGCAC 1 cut(s) 627
Ama87I CYCGRG 1 cut(s) 368
AoxI GGCC 3 cut(s) 34, 402, 504
ApaLI GTGCAC 1 cut(s) 627
AspLEI GCGC 2 cut(s) 230, 382
AspS9I GGNCC 2 cut(s) 35, 504
AsuC2I CCSGG 3 cut(s) 388, 429, 484
AsuHPI GGTGA 2 cut(s) 214, 664
AvaI CYCGRG 1 cut(s) 368
BaeGI GKGCMC 1 cut(s) 631
BalI TGGCCA 1 cut(s) 404
BanI GGYRCC 1 cut(s) 227
BbsI GAAGAC 3 cut(s) 190, 457, 577
Bbv12I GWGCWC 1 cut(s) 631
BccI CCATC 3 cut(s) 26, 208, 598
BceAI ACGGC 1 cut(s) 140
BcgI CGANNNNNNTGC 4 cut(s) 199, 233, 359, 393
BcnI CCSGG 3 cut(s) 388, 429, 484
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 3 cut(s) 15, 92, 666
BfoI RGCGCY 1 cut(s) 231
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
BmcAI AGTACT 1 cut(s) 269
Bme1390I CCNGG 3 cut(s) 388, 429, 484
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 2 cut(s) 35, 504
BmiI GGNNCC 2 cut(s) 229, 505
BmrFI CCNGG 3 cut(s) 388, 429, 484
BmrI ACTGGG 1 cut(s) 510
BmsI GCATC 2 cut(s) 614, 671
BmuI ACTGGG 1 cut(s) 510
BpiI GAAGAC 3 cut(s) 190, 457, 577
BpuMI CCSGG 3 cut(s) 388, 429, 484
BsaAI YACGTR 1 cut(s) 408
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 428, 456
BsaXI ACNNNNNCTCC 2 cut(s) 530, 560
Bsc4I CCNNNNNNNGG 1 cut(s) 638
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 505
BseDI CCNNGG 2 cut(s) 428, 456
BseLI CCNNNNNNNGG 1 cut(s) 638
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 1 cut(s) 505
BseRI GAGGAG 1 cut(s) 193
BseSI GKGCMC 1 cut(s) 631
Bsh1236I CGCG 1 cut(s) 110
Bsh1285I CGRYCG 1 cut(s) 615
BshFI GGCC 3 cut(s) 36, 404, 506
BshNI GGYRCC 1 cut(s) 227
BsiEI CGRYCG 1 cut(s) 615
BsiHKAI GWGCWC 1 cut(s) 631
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 5 cut(s) 207, 225, 387, 428, 483
BsiWI CGTACG 1 cut(s) 408
BslFI GGGAC 1 cut(s) 403
BslI CCNNNNNNNGG 1 cut(s) 638
BsmAI GTCTC 1 cut(s) 365
BsmFI GGGAC 1 cut(s) 403
BsnI GGCC 3 cut(s) 36, 404, 506
BsoBI CYCGRG 1 cut(s) 368
Bsp1286I GDGCHC 1 cut(s) 631
Bsp143I GATC 4 cut(s) 105, 360, 510, 612
Bsp68I TCGCGA 1 cut(s) 110
BspACI CCGC 1 cut(s) 257
BspANI GGCC 3 cut(s) 36, 404, 506
BspCNI CTCAG 1 cut(s) 409
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 2 cut(s) 229, 505
BspT107I GGYRCC 1 cut(s) 227
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 1 cut(s) 505
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 428, 456
BssMI GATC 4 cut(s) 105, 360, 510, 612
BssNI GRCGYC 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 456
Bst4CI ACNGT 2 cut(s) 73, 147
BstACI GRCGYC 1 cut(s) 228
BstBAI YACGTR 1 cut(s) 408
BstC8I GCNNGC 1 cut(s) 347
BstDEI CTNAG 2 cut(s) 417, 682
BstENI CCTNNNNNAGG 1 cut(s) 636
BstFNI CGCG 1 cut(s) 110
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 2 cut(s) 230, 382
BstKTI GATC 4 cut(s) 108, 363, 513, 615
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 4 cut(s) 105, 360, 510, 612
BstMCI CGRYCG 1 cut(s) 615
BstMWI GCNNNNNNNGC 4 cut(s) 20, 116, 125, 234
BstSCI CCNGG 3 cut(s) 386, 427, 482
BstSLI GKGCMC 1 cut(s) 631
BstUI CGCG 1 cut(s) 110
BstV2I GAAGAC 3 cut(s) 190, 457, 577
BsuRI GGCC 3 cut(s) 36, 404, 506
BtgZI GCGATG 1 cut(s) 125
BtsIMutI CAGTG 1 cut(s) 498
BtuMI TCGCGA 1 cut(s) 110
Cac8I GCNNGC 1 cut(s) 347
CfoI GCGC 2 cut(s) 230, 382
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 2 cut(s) 35, 504
CseI GACGC 1 cut(s) 468
Csp6I GTAC 5 cut(s) 133, 268, 409, 547, 587
CspCI CAANNNNNGTGG 2 cut(s) 242, 277
CviQI GTAC 5 cut(s) 133, 268, 409, 547, 587
DdeI CTNAG 2 cut(s) 417, 682
DinI GGCGCC 1 cut(s) 229
DpnI GATC 4 cut(s) 107, 362, 512, 614
DpnII GATC 4 cut(s) 105, 360, 510, 612
EaeI YGGCCR 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 456
Eco57I CTGAAG 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 368
EcoNI CCTNNNNNAGG 1 cut(s) 636
EcoT14I CCWWGG 1 cut(s) 456
EgeI GGCGCC 1 cut(s) 229
EheI GGCGCC 1 cut(s) 229
ErhI CCWWGG 1 cut(s) 456
FaiI YATR 4 cut(s) 62, 161, 242, 439
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FaqI GGGAC 1 cut(s) 403
Fnu4HI GCNGC 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 3 cut(s) 15, 92, 666
FspI TGCGCA 1 cut(s) 381
GlaI GCGC 2 cut(s) 229, 381
GluI GCNGC 1 cut(s) 258
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 3 cut(s) 36, 404, 506
HapII CCGG 5 cut(s) 207, 225, 387, 428, 483
HgaI GACGC 1 cut(s) 468
HhaI GCGC 2 cut(s) 230, 382
Hin1I GRCGYC 1 cut(s) 228
Hin6I GCGC 2 cut(s) 228, 380
HinP1I GCGC 2 cut(s) 228, 380
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HinfI GANTC 5 cut(s) 168, 245, 322, 373, 391
HpaII CCGG 5 cut(s) 207, 225, 387, 428, 483
HphI GGTGA 2 cut(s) 214, 664
Hpy166II GTNNAC 3 cut(s) 76, 580, 629
Hpy188I TCNGA 3 cut(s) 360, 450, 612
Hpy188III TCNNGA 6 cut(s) 41, 55, 109, 172, 283, 370
Hpy8I GTNNAC 3 cut(s) 76, 580, 629
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 1 cut(s) 109
HpyCH4III ACNGT 2 cut(s) 73, 147
HpyCH4IV ACGT 3 cut(s) 5, 276, 407
HpyCH4V TGCA 4 cut(s) 87, 345, 560, 629
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 116, 125, 234
HpyF3I CTNAG 2 cut(s) 417, 682
HpySE526I ACGT 3 cut(s) 5, 276, 407
Hsp92I GRCGYC 1 cut(s) 228
HspAI GCGC 2 cut(s) 228, 380
KasI GGCGCC 1 cut(s) 227
Kzo9I GATC 4 cut(s) 105, 360, 510, 612
LmnI GCTCC 1 cut(s) 538
LweI GCATC 2 cut(s) 614, 671
MaeI CTAG 3 cut(s) 15, 92, 666
MaeII ACGT 3 cut(s) 5, 276, 407
MaeIII GTNAC 1 cut(s) 220
MalI GATC 4 cut(s) 107, 362, 512, 614
MboI GATC 4 cut(s) 105, 360, 510, 612
MboII GAAGA 5 cut(s) 190, 457, 582, 585, 629
MhlI GDGCHC 1 cut(s) 631
MlsI TGGCCA 1 cut(s) 404
MluNI TGGCCA 1 cut(s) 404
Mly113I GGCGCC 1 cut(s) 228
MlyI GAGTC 3 cut(s) 254, 367, 385
Mox20I TGGCCA 1 cut(s) 404
MscI TGGCCA 1 cut(s) 404
MseI TTAA 1 cut(s) 273
Msp20I TGGCCA 1 cut(s) 404
MspI CCGG 5 cut(s) 207, 225, 387, 428, 483
MspR9I CCNGG 3 cut(s) 388, 429, 484
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 4 cut(s) 20, 116, 125, 234
NarI GGCGCC 1 cut(s) 228
NciI CCSGG 3 cut(s) 388, 429, 484
NdeII GATC 4 cut(s) 105, 360, 510, 612
NlaIV GGNNCC 2 cut(s) 229, 505
NmuCI GTSAC 1 cut(s) 220
NruI TCGCGA 1 cut(s) 110
NsbI TGCGCA 1 cut(s) 381
PaeR7I CTCGAG 1 cut(s) 368
PcsI WCGNNNNNNNCGW 1 cut(s) 573
PfeI GAWTC 2 cut(s) 168, 322
Pfl23II CGTACG 1 cut(s) 408
PfoI TCCNGGA 2 cut(s) 386, 482
PkrI GCNGC 1 cut(s) 259
Ple19I CGATCG 1 cut(s) 615
PleI GAGTC 3 cut(s) 253, 367, 385
PluTI GGCGCC 1 cut(s) 231
PpsI GAGTC 3 cut(s) 253, 367, 385
Ppu21I YACGTR 1 cut(s) 408
PspLI CGTACG 1 cut(s) 408
PspN4I GGNNCC 2 cut(s) 229, 505
PspPI GGNCC 2 cut(s) 35, 504
PvuI CGATCG 1 cut(s) 615
RruI TCGCGA 1 cut(s) 110
RsaI GTAC 5 cut(s) 134, 269, 410, 548, 588
RsaNI GTAC 5 cut(s) 133, 268, 409, 547, 587
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 4 cut(s) 105, 360, 510, 612
Sau96I GGNCC 2 cut(s) 35, 504
ScaI AGTACT 1 cut(s) 269
SchI GAGTC 3 cut(s) 254, 367, 385
ScrFI CCNGG 3 cut(s) 388, 429, 484
SduI GDGCHC 1 cut(s) 631
SfaNI GCATC 2 cut(s) 614, 671
SfoI GGCGCC 1 cut(s) 229
Sfr274I CTCGAG 1 cut(s) 368
SgrAI CRCCGGYG 1 cut(s) 224
SlaI CTCGAG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
SsiI CCGC 1 cut(s) 257
SspDI GGCGCC 1 cut(s) 227
SspMI CTAG 3 cut(s) 15, 92, 666
StyD4I CCNGG 3 cut(s) 386, 427, 482
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 2 cut(s) 73, 147
TaiI ACGT 3 cut(s) 8, 279, 410
TaqI TCGA 4 cut(s) 121, 369, 596, 615
TatI WGTACW 2 cut(s) 132, 267
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 2 cut(s) 168, 322
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 1 cut(s) 505
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 128, 457
TspGWI ACGGA 2 cut(s) 539, 582
TspRI CASTG 1 cut(s) 505
VneI GTGCAC 1 cut(s) 627
XagI CCTNNNNNAGG 1 cut(s) 636
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XhoI CTCGAG 1 cut(s) 368
XspI CTAG 3 cut(s) 15, 92, 666
ZrmI AGTACT 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.