Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001905

Physical Location & Seq

Genomic Coordinates Reverse (-)

25519305 .. 25520895

Gene Structure 1591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCAACAATGAAAATACCAATGACGGTACCTTCTCCTCGAGTCGATGCTGACCAACTCTTTAAGGCCTTCAAAGGAAGAGGCTGCGATACTTCGGTGATCATCAACATCTTAGCTCATCGCAATGCAACACAACGAGCTCTCATCGAACAAGAATACGAAACCAAATTCTCGGATGACCTCCGAAAACGTCTCCACTCTGAGCTTCATGGTCATCTCAAGAAAGCCGTTCTTTTGTGGATGCCTGAAGCAGTGGAGCGAGACGCTTCAATACTGAAACGCTCCTTAAGAGGAGCCGTGACTGATCATAAAGCGATTGCTGAGATTATATGCACACGATCTGGCTCTCAGCTTCGTCAGATCAAACAGGTCTACTCAAACACTTTCGGTGTGAAACTTGAAGAGGACATCGAATCCGAAGCTTCTGGCAATCACAAAAGAGTTTTGCTCGCGTATTTGAACACTACGCGATATGAAGGACCAGAGATCGATAATGCGAGTGTAGAGAACGATGCTAGGACTCTCAAGAGCGCGGTTGCAAGGAAGCATAAATCTGATGACCAGACGTTGATTCAGATATTCACTGACCGAAGCAGGACTCATTTGGTCGCTGTAAGATCTACTTACCGTTCCATGTACGGCAAAGAACTTGGAAAGGCCATAAGAGATGAGACTCGCGGGAACTTCGAGCATGTCCTTCTAACAATTTTACAATGTGCTGAAAACTCTTGTTTCTATTTCGCAAAGGCATTGAGGAAATCAATGAAAGGATTAGGAACAGATGACACGGCGTTGATAAGAATCGTGGTGACGAGAGCAGAGGTGGATATGCAGTTCATCATCACAGAATACCGTAAGAGATACAAGAAGACTTTGTACAATGCTGTTCATTCTGATACAACTAGTCATTACAGGACTTTTCTCCTCTCTCTTTTAGGCCCCAACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0006950 GO:0006970 GO:0007275 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009555 GO:0009628 GO:0009639 GO:0009651 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0044706 GO:0044877 GO:0046872 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051015 GO:0051704 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

316

Amino Acids

35.99

Weight (kDa)

9.48

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	16 - 79	2.8e-17	Annexin
Annexin	PF00191	87 - 151	6.1e-19	Annexin
Annexin	PF00191	171 - 236	5.3e-16	Annexin
Annexin	PF00191	246 - 311	2.3e-20	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68090 AT1G68090 AT5G10220 AT5G10230
fragaria_vesca	FvH4_5g36750 FvH4_5g36780
malus_domestica	MD08G1187000.v1.1 MD15G1372900.v1.1 MD16G1013400.v1.1
prunus_persica	Prupe.1G337800_v2.0.a1 Prupe.1G337800_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1
pyrus_communis	pycom08g16080 pycom15g33390
rosa_chinensis	RchiOBHm_Chr4g0433651 RchiOBHm_Chr7g0242801 RchiOBHm_Chr7g0242891
rosa_laevigata	RLG00000000871 RLG00000000878 RLG00000006741
rosa_multiflora	Rmu_sc0000312.1_g000020 Rmu_sc0004165.1_g000047 Rmu_sc0004165.1_g000053 Rmu_sc0007085.1_g000001 Rmu_sc0007085.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375100
rosa_rugosa	Rorug07G0317500 Rorug07G0317600
rosa_samantha	Rh4DG329300 Rh7AG472200 Rh7AG472500 Rh7AG473200 Rh7BG442900 Rh7BG443200 Rh7CG489400 Rh7CG490100 Rh7DG457900 Rh7DG458400
rosa_wichuraiana	Rw4G028130 Rw7G039090 Rw7G039130 Rw7G039340 Rw7G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	28
AccB1I	GGYRCC	1 cut(s)	28
AccI	GTMKAC	1 cut(s)	372
AccII	CGCG	4 cut(s)	452, 469, 533, 678
AciI	CCGC	2 cut(s)	533, 678
AclI	AACGTT	1 cut(s)	945
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	267
AfaI	GTAC	3 cut(s)	30, 638, 878
AflII	CTTAAG	1 cut(s)	286
AgsI	TTSAA	4 cut(s)	73, 270, 401, 460
AhlI	ACTAGT	1 cut(s)	902
AloI	GAACNNNNNNTCC	2 cut(s)	818, 850
AluBI	AGCT	5 cut(s)	116, 140, 205, 352, 422
AluI	AGCT	5 cut(s)	116, 140, 205, 352, 422
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	3 cut(s)	197, 255, 665
Ama87I	CYCGRG	1 cut(s)	39
AoxI	GGCC	3 cut(s)	66, 657, 937
ApeKI	GCWGC	1 cut(s)	84
ApoI	RAATTY	1 cut(s)	167
Asp718I	GGTACC	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	533
AspS9I	GGNCC	2 cut(s)	479, 938
AsuHPI	GGTGA	2 cut(s)	109, 820
AvaI	CYCGRG	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	479
BaeI	ACNNNNGTAYC	2 cut(s)	81, 114
BanI	GGYRCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	142
BarI	GAAGNNNNNNTAC	2 cut(s)	860, 892
BbsI	GAAGAC	1 cut(s)	875
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	71
BceAI	ACGGC	4 cut(s)	212, 281, 655, 804
BclI	TGATCA	2 cut(s)	99, 304
BcoDI	GTCTC	3 cut(s)	197, 255, 665
BcuI	ACTAGT	1 cut(s)	902
BfaI	CTAG	2 cut(s)	516, 903
BfrI	CTTAAG	1 cut(s)	286
BglII	AGATCT	1 cut(s)	617
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
Bme18I	GGWCC	1 cut(s)	479
BmeT110I	CYCGRG	1 cut(s)	39
BmgT120I	GGNCC	2 cut(s)	479, 938
BmiI	GGNNCC	3 cut(s)	30, 295, 940
BmsI	GCATC	3 cut(s)	37, 231, 502
BpiI	GAAGAC	1 cut(s)	875
BplI	GAGNNNNNCTC	2 cut(s)	432, 464
BpuEI	CTTGAG	2 cut(s)	203, 509
Bsa29I	ATCGAT	1 cut(s)	489
BsaBI	GATNNNNATC	1 cut(s)	800
Bse3DI	GCAATG	1 cut(s)	130
Bse8I	GATNNNNATC	1 cut(s)	800
BseCI	ATCGAT	1 cut(s)	489
BseGI	GGATG	2 cut(s)	181, 246
BseJI	GATNNNNATC	1 cut(s)	800
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	3 cut(s)	192, 312, 362
BseRI	GAGGAG	3 cut(s)	27, 306, 914
BseXI	GCAGC	1 cut(s)	71
Bsh1236I	CGCG	4 cut(s)	452, 469, 533, 678
BshFI	GGCC	3 cut(s)	68, 659, 939
BshNI	GGYRCC	1 cut(s)	28
BshVI	ATCGAT	1 cut(s)	489
BsiHKAI	GWGCWC	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	39
BsmAI	GTCTC	3 cut(s)	197, 255, 665
BsmBI	CGTCTC	2 cut(s)	197, 255
BsnI	GGCC	3 cut(s)	68, 659, 939
BsoBI	CYCGRG	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp1407I	TGTACA	1 cut(s)	876
Bsp143I	GATC	6 cut(s)	99, 304, 338, 360, 486, 617
BspACI	CCGC	2 cut(s)	533, 678
BspANI	GGCC	3 cut(s)	68, 659, 939
BspCNI	CTCAG	3 cut(s)	193, 313, 361
BspDI	ATCGAT	1 cut(s)	489
BspFNI	CGCG	4 cut(s)	452, 469, 533, 678
BspLI	GGNNCC	3 cut(s)	30, 295, 940
BspT107I	GGYRCC	1 cut(s)	28
BspTI	CTTAAG	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	130
BsrGI	TGTACA	1 cut(s)	876
BssMI	GATC	6 cut(s)	99, 304, 338, 360, 486, 617
Bst4CI	ACNGT	3 cut(s)	28, 629, 854
Bst6I	CTCTTC	2 cut(s)	73, 396
BstAFI	CTTAAG	1 cut(s)	286
BstAUI	TGTACA	1 cut(s)	876
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	4 cut(s)	112, 201, 321, 348
BstF5I	GGATG	2 cut(s)	181, 246
BstFNI	CGCG	4 cut(s)	452, 469, 533, 678
BstHHI	GCGC	1 cut(s)	533
BstKTI	GATC	6 cut(s)	102, 307, 341, 363, 489, 620
BstMAI	GTCTC	3 cut(s)	197, 255, 665
BstMBI	GATC	6 cut(s)	99, 304, 338, 360, 486, 617
BstNSI	RCATGY	1 cut(s)	695
BstUI	CGCG	4 cut(s)	452, 469, 533, 678
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	875
BstX2I	RGATCY	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	617
Bsu15I	ATCGAT	1 cut(s)	489
BsuRI	GGCC	3 cut(s)	68, 659, 939
BsuTUI	ATCGAT	1 cut(s)	489
BtgZI	GCGATG	1 cut(s)	104
BtsCI	GGATG	2 cut(s)	181, 246
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	2 cut(s)	258, 582
Cac8I	GCNNGC	1 cut(s)	450
CfoI	GCGC	1 cut(s)	533
Cfr13I	GGNCC	2 cut(s)	479, 938
ClaI	ATCGAT	1 cut(s)	489
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	3 cut(s)	29, 637, 877
CviAII	CATG	3 cut(s)	209, 634, 692
CviQI	GTAC	3 cut(s)	29, 637, 877
DdeI	CTNAG	4 cut(s)	112, 201, 321, 348
DpnI	GATC	6 cut(s)	101, 306, 340, 362, 488, 619
DpnII	GATC	6 cut(s)	99, 304, 338, 360, 486, 617
Eam1104I	CTCTTC	2 cut(s)	73, 396
EarI	CTCTTC	2 cut(s)	73, 396
Ecl136II	GAGCTC	1 cut(s)	140
Eco147I	AGGCCT	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	479
Eco53kI	GAGCTC	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	267
Eco88I	CYCGRG	1 cut(s)	39
EcoICRI	GAGCTC	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	938
EcoT38I	GRGCYC	1 cut(s)	142
Esp3I	CGTCTC	2 cut(s)	197, 255
FaeI	CATG	3 cut(s)	212, 637, 695
FalI	AAGNNNNNCTT	4 cut(s)	216, 248, 607, 639
FatI	CATG	3 cut(s)	208, 633, 691
FauI	CCCGC	1 cut(s)	671
FbaI	TGATCA	2 cut(s)	99, 304
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	2 cut(s)	188, 253
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	1 cut(s)	85
FspBI	CTAG	2 cut(s)	516, 903
GlaI	GCGC	1 cut(s)	532
GluI	GCNGC	1 cut(s)	85
HaeIII	GGCC	3 cut(s)	68, 659, 939
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	533
Hin1II	CATG	3 cut(s)	212, 637, 695
Hin6I	GCGC	1 cut(s)	531
HinP1I	GCGC	1 cut(s)	531
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	7 cut(s)	42, 413, 520, 571, 598, 673, 801
HphI	GGTGA	2 cut(s)	109, 820
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	8 cut(s)	175, 185, 202, 360, 418, 556, 576, 895
Hpy188III	TCNNGA	2 cut(s)	220, 526
Hpy8I	GTNNAC	1 cut(s)	373
HpyAV	CCTTC	4 cut(s)	42, 79, 470, 707
HpyCH4III	ACNGT	3 cut(s)	28, 629, 854
HpyCH4IV	ACGT	3 cut(s)	190, 566, 945
HpyCH4V	TGCA	4 cut(s)	128, 333, 539, 832
HpyF3I	CTNAG	4 cut(s)	112, 201, 321, 348
HpySE526I	ACGT	3 cut(s)	190, 566, 945
Hsp92II	CATG	3 cut(s)	212, 637, 695
HspAI	GCGC	1 cut(s)	531
KpnI	GGTACC	1 cut(s)	32
Ksp22I	TGATCA	2 cut(s)	99, 304
Kzo9I	GATC	6 cut(s)	99, 304, 338, 360, 486, 617
LmnI	GCTCC	3 cut(s)	256, 287, 293
LpnPI	CCDG	8 cut(s)	258, 327, 353, 411, 495, 575, 580, 898
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	3 cut(s)	37, 231, 502
MaeI	CTAG	2 cut(s)	516, 903
MaeII	ACGT	3 cut(s)	190, 566, 945
MaeIII	GTNAC	2 cut(s)	298, 808
MalI	GATC	6 cut(s)	101, 306, 340, 362, 488, 619
MboI	GATC	6 cut(s)	99, 304, 338, 360, 486, 617
MboII	GAAGA	3 cut(s)	90, 413, 880
MflI	RGATCY	1 cut(s)	617
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	2 cut(s)	167, 705
MlyI	GAGTC	4 cut(s)	51, 514, 592, 667
MnlI	CCTC	8 cut(s)	48, 74, 191, 284, 397, 747, 814, 935
MseI	TTAA	2 cut(s)	63, 287
MslI	CAYNNNNRTG	1 cut(s)	123
MspCI	CTTAAG	1 cut(s)	286
MvnI	CGCG	4 cut(s)	452, 469, 533, 678
NdeII	GATC	6 cut(s)	99, 304, 338, 360, 486, 617
NlaIII	CATG	3 cut(s)	212, 637, 695
NlaIV	GGNNCC	3 cut(s)	30, 295, 940
NmuCI	GTSAC	2 cut(s)	298, 808
NspI	RCATGY	1 cut(s)	695
PaeR7I	CTCGAG	1 cut(s)	39
PceI	AGGCCT	1 cut(s)	68
PfeI	GAWTC	3 cut(s)	413, 571, 801
PkrI	GCNGC	1 cut(s)	86
PleI	GAGTC	4 cut(s)	50, 514, 592, 667
PpsI	GAGTC	4 cut(s)	50, 514, 592, 667
Psp124BI	GAGCTC	1 cut(s)	142
Psp1406I	AACGTT	1 cut(s)	945
PspN4I	GGNNCC	3 cut(s)	30, 295, 940
PspPI	GGNCC	2 cut(s)	479, 938
PspXI	VCTCGAGB	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	617
RsaI	GTAC	3 cut(s)	30, 638, 878
RsaNI	GTAC	3 cut(s)	29, 637, 877
RseI	CAYNNNNRTG	1 cut(s)	123
SacI	GAGCTC	1 cut(s)	142
SaqAI	TTAA	2 cut(s)	63, 287
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	6 cut(s)	99, 304, 338, 360, 486, 617
Sau96I	GGNCC	2 cut(s)	479, 938
SchI	GAGTC	4 cut(s)	51, 514, 592, 667
SduI	GDGCHC	1 cut(s)	142
SfaNI	GCATC	3 cut(s)	37, 231, 502
Sfr274I	CTCGAG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	479
SlaI	CTCGAG	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	4 cut(s)	39, 218, 286, 524
SmoI	CTYRAG	4 cut(s)	39, 218, 286, 524
SpeI	ACTAGT	1 cut(s)	902
Sse9I	AATT	2 cut(s)	167, 705
SseBI	AGGCCT	1 cut(s)	68
SsiI	CCGC	2 cut(s)	533, 678
SspMI	CTAG	2 cut(s)	516, 903
SstI	GAGCTC	1 cut(s)	142
StuI	AGGCCT	1 cut(s)	68
TaaI	ACNGT	3 cut(s)	28, 629, 854
TaiI	ACGT	3 cut(s)	193, 569, 948
TaqI	TCGA	6 cut(s)	40, 45, 147, 411, 489, 687
TaqII	GACCGA	1 cut(s)	603
TasI	AATT	2 cut(s)	167, 705
TatI	WGTACW	1 cut(s)	876
TfiI	GAWTC	3 cut(s)	413, 571, 801
Tru1I	TTAA	2 cut(s)	63, 287
Tru9I	TTAA	2 cut(s)	63, 287
TscAI	CASTG	2 cut(s)	258, 589
TseFI	GTSAC	2 cut(s)	298, 808
TseI	GCWGC	1 cut(s)	84
Tsp45I	GTSAC	2 cut(s)	298, 808
TspDTI	ATGAA	6 cut(s)	26, 197, 489, 779, 826, 878
TspRI	CASTG	2 cut(s)	258, 589
Vha464I	CTTAAG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	1 cut(s)	695
XhoI	CTCGAG	1 cut(s)	39
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	2 cut(s)	516, 903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.