Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001905

Physical Location & Seq

Genomic Coordinates Forward (+)

65594705 .. 65595157

Gene Structure 453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG472500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTGGACAAAGATGCGAAGGCTTTCTTTAAAGCAGGGGAGAGGAAATTGGGGACGGATGAGAAGAAGTTCATTGAGATTTTCAGTGGGAGGAGCAGTGCGCATTTGAACGCTGTGAGTGCTGCTTATCAGAACATGTATGGGAGTTCTTTAAAGAAGGCGGTGAAGAAGGAGACGTCGGGGCTTTTCGAGCACGGGCTGGTGACGATTCTGCAGTGTGCTGAGCATCCCGGGAGGTATTTCGCTAAGGTTTTGCATAAGGCGATGAAGGGTTTAGGGACAGATGATAGTACACTTTTGAGGGTGATTGTTTCGAGGGCGGAGATTGATTTGCAGTATGTAAAGGCTGAGTACCAAAAGAAGTATGGAAAGAGTTTGGGTGATGCTGTTCGTTCTGAGACTTCTGGGAATTACAGGGATTTTCTTCTGGCTCTTATAGGCCCCAGTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0006950 GO:0006970 GO:0007275 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009555 GO:0009628 GO:0009639 GO:0009651 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0044706 GO:0044877 GO:0046872 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051015 GO:0051704 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

150

Amino Acids

16.59

Weight (kDa)

9.45

Isoelectric Point (pI)

23.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	5 - 70	6.1e-20	Annexin
Annexin	PF00191	80 - 145	1.1e-25	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68090 AT1G68090 AT5G10220 AT5G10230
fragaria_vesca	FvH4_5g36750 FvH4_5g36780
malus_domestica	MD08G1187000.v1.1 MD15G1372900.v1.1 MD16G1013400.v1.1
prunus_persica	Prupe.1G337800_v2.0.a1 Prupe.1G337800_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1
pyrus_communis	pycom08g16080 pycom15g33390
rosa_chinensis	RchiOBHm_Chr4g0433651 RchiOBHm_Chr7g0242801 RchiOBHm_Chr7g0242891
rosa_laevigata	RLG00000000871 RLG00000000878 RLG00000006741
rosa_multiflora	Rmu_sc0000312.1_g000020 Rmu_sc0004165.1_g000047 Rmu_sc0004165.1_g000053 Rmu_sc0007085.1_g000001 Rmu_sc0007085.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375100
rosa_rugosa	Rorug07G0317500 Rorug07G0317600
rosa_samantha	Rh4DG329300 Rh7AG472200 Rh7AG472500 Rh7AG473200 Rh7BG442900 Rh7BG443200 Rh7CG489400 Rh7CG490100 Rh7DG457900 Rh7DG458400
rosa_wichuraiana	Rw4G028130 Rw7G039090 Rw7G039130 Rw7G039340 Rw7G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	179
Acc16I	TGCGCA	1 cut(s)	102
AciI	CCGC	2 cut(s)	161, 320
AcyI	GRCGYC	1 cut(s)	176
AfaI	GTAC	2 cut(s)	292, 353
AflIII	ACRYGT	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	109
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	2 cut(s)	167, 392
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	439
ApeKI	GCWGC	1 cut(s)	122
Asp700I	GAANNNNTTC	2 cut(s)	23, 68
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	440
AsuC2I	CCSGG	2 cut(s)	231, 232
AsuHPI	GGTGA	4 cut(s)	175, 214, 316, 392
AvaI	CYCGRG	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	109
BcnI	CCSGG	2 cut(s)	231, 232
BcoDI	GTCTC	2 cut(s)	167, 392
BfmI	CTRYAG	1 cut(s)	212
BisI	GCNGC	1 cut(s)	123
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	2 cut(s)	231, 232
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	1 cut(s)	442
BmrFI	CCNGG	2 cut(s)	231, 232
BmrI	ACTGGG	1 cut(s)	438
BmsI	GCATC	3 cut(s)	4, 235, 373
BmuI	ACTGGG	1 cut(s)	438
Bpu10I	CCTNAGC	1 cut(s)	246
Bpu1102I	GCTNAGC	1 cut(s)	222
BpuMI	CCSGG	2 cut(s)	231, 232
BsaHI	GRCGYC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bse1I	ACTGG	1 cut(s)	444
BseDI	CCNNGG	1 cut(s)	230
BseGI	GGATG	2 cut(s)	64, 226
BseMII	CTCAG	3 cut(s)	213, 339, 387
BseNI	ACTGG	1 cut(s)	444
BseRI	GAGGAG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	1 cut(s)	441
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	2 cut(s)	67, 292
BsmAI	GTCTC	2 cut(s)	167, 392
BsmBI	CGTCTC	1 cut(s)	167
BsmFI	GGGAC	2 cut(s)	67, 292
BsnI	GGCC	1 cut(s)	441
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp1720I	GCTNAGC	1 cut(s)	222
BspACI	CCGC	2 cut(s)	161, 320
BspANI	GGCC	1 cut(s)	441
BspCNI	CTCAG	3 cut(s)	214, 340, 388
BspLI	GGNNCC	1 cut(s)	442
BspMAI	CTGCAG	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	444
BssECI	CCNNGG	1 cut(s)	230
BssNI	GRCGYC	1 cut(s)	176
BstACI	GRCGYC	1 cut(s)	176
BstDEI	CTNAG	4 cut(s)	222, 246, 348, 396
BstF5I	GGATG	2 cut(s)	64, 226
BstHHI	GCGC	1 cut(s)	103
BstMAI	GTCTC	2 cut(s)	167, 392
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 190
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	2 cut(s)	229, 230
BstSFI	CTRYAG	1 cut(s)	212
BstV1I	GCAGC	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	441
BtgZI	GCGATG	1 cut(s)	278
BtsCI	GGATG	2 cut(s)	64, 226
BtsI	GCAGTG	2 cut(s)	103, 221
BtsIMutI	CAGTG	3 cut(s)	91, 103, 221
CfoI	GCGC	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	440
Cfr9I	CCCGGG	1 cut(s)	230
Csp6I	GTAC	2 cut(s)	291, 352
CviAII	CATG	1 cut(s)	136
CviJI	RGCY	6 cut(s)	23, 184, 199, 347, 431, 441
CviKI_1	RGCY	6 cut(s)	23, 184, 199, 347, 431, 441
CviQI	GTAC	2 cut(s)	291, 352
DdeI	CTNAG	4 cut(s)	222, 246, 348, 396
DraI	TTTAAA	2 cut(s)	31, 153
EciI	GGCGGA	1 cut(s)	335
Eco88I	CYCGRG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	440
Esp3I	CGTCTC	1 cut(s)	167
FaeI	CATG	1 cut(s)	139
FaiI	YATR	6 cut(s)	137, 141, 258, 339, 366, 437
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	2 cut(s)	67, 292
FatI	CATG	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	2 cut(s)	71, 213
Fsp4HI	GCNGC	1 cut(s)	123
FspAI	RTGCGCAY	1 cut(s)	102
FspI	TGCGCA	1 cut(s)	102
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	441
HapII	CCGG	1 cut(s)	231
HhaI	GCGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	176
Hin1II	CATG	1 cut(s)	139
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HinfI	GANTC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	4 cut(s)	175, 214, 316, 392
Hpy166II	GTNNAC	2 cut(s)	7, 293
Hpy188I	TCNGA	2 cut(s)	132, 397
Hpy8I	GTNNAC	2 cut(s)	7, 293
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	4 cut(s)	13, 151, 163, 262
HpyCH4IV	ACGT	1 cut(s)	176
HpyCH4V	TGCA	3 cut(s)	214, 256, 334
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 190
HpyF3I	CTNAG	4 cut(s)	222, 246, 348, 396
HpySE526I	ACGT	1 cut(s)	176
Hsp92I	GRCGYC	1 cut(s)	176
Hsp92II	CATG	1 cut(s)	139
HspAI	GCGC	1 cut(s)	101
LmnI	GCTCC	1 cut(s)	93
LpnPI	CCDG	6 cut(s)	21, 185, 244, 390, 400, 413
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	3 cut(s)	4, 235, 373
MaeII	ACGT	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	202
MboII	GAAGA	3 cut(s)	76, 178, 416
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	2 cut(s)	47, 409
MnlI	CCTC	5 cut(s)	36, 84, 228, 294, 309
MroXI	GAANNNNTTC	2 cut(s)	23, 68
MseI	TTAA	2 cut(s)	30, 152
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	2 cut(s)	231, 232
MwoI	GCNNNNNNNGC	2 cut(s)	119, 190
NciI	CCSGG	2 cut(s)	231, 232
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	442
NmuCI	GTSAC	1 cut(s)	202
NsbI	TGCGCA	1 cut(s)	102
NspI	RCATGY	1 cut(s)	139
PciI	ACATGT	1 cut(s)	135
PdmI	GAANNNNTTC	2 cut(s)	23, 68
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	124
PscI	ACATGT	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	442
PspPI	GGNCC	1 cut(s)	440
PstI	CTGCAG	1 cut(s)	216
RsaI	GTAC	2 cut(s)	292, 353
RsaNI	GTAC	2 cut(s)	291, 352
SaqAI	TTAA	2 cut(s)	30, 152
SatI	GCNGC	1 cut(s)	123
Sau96I	GGNCC	1 cut(s)	440
ScrFI	CCNGG	2 cut(s)	231, 232
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	3 cut(s)	179, 239, 252
SfaNI	GCATC	3 cut(s)	4, 235, 373
SfcI	CTRYAG	1 cut(s)	212
SmaI	CCCGGG	1 cut(s)	232
Sse9I	AATT	2 cut(s)	47, 409
SsiI	CCGC	2 cut(s)	161, 320
StyD4I	CCNGG	2 cut(s)	229, 230
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	2 cut(s)	189, 314
TasI	AATT	2 cut(s)	47, 409
TatI	WGTACW	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	2 cut(s)	30, 152
Tru9I	TTAA	2 cut(s)	30, 152
TscAI	CASTG	3 cut(s)	91, 103, 221
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	2 cut(s)	61, 281
TspGWI	ACGGA	1 cut(s)	71
TspMI	CCCGGG	1 cut(s)	230
TspRI	CASTG	3 cut(s)	91, 103, 221
XceI	RCATGY	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	362
XmaI	CCCGGG	1 cut(s)	230
XmnI	GAANNNNTTC	2 cut(s)	23, 68
ZraI	GACGTC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.