Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001905

Physical Location & Seq

Genomic Coordinates Forward (+)

65588596 .. 65590585

Gene Structure 1990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG472200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTCCTCTTTGATAGTTCCACCAGTCCTAACCACCCCCAGAGACGACGCCATCCTCCTCCACAAAGCCTTCAAAGGCTTCGGCTGCGACAAGCCCGCCGTCATCAACATCCTCGCCCACCGTGACTCCACCCAGCGAGCCTACATCAATCACGAGTACCGCACCATGTACTCCGAGGACCTCAACCACCGCCTCTCCTCCGAGCTAAGCGGAAATATCAAGAAAGCCCTCCTCCTTTGGACCCACGACCCTCCCACCCGCGACGCCACCATCGTCCGGGAGGCCCTCACCGGCCCCAACATCATCGATCTCAGAGCCGCTACTGAAGTCATCTGCTCTCGAACCTCCACCCAGATCATGCAGTTCAAGCAAGTCTACTTTGCGTTGTTTGGTTCTTATCTTGAGCATGACATCGAAGTTCAAGCTTCCGGCGACCACAAGAACCTGCTGCTAAGTTACGTCGCCACGCCTAGATATGAAGGTCTTGACTTTGACAGGTTCATGGTGGACAAAGATGCGAAGGCTTTGTACAAAGCAGGGGAGAGGAAATTGGGGACGGATGAGAAGAAGTTCATTGAGATTTTCAGTGGGAGGAGCAGTGCGCATTTGAATGCTGTGAGTGCTGCTTATCAGAACATGTATGGGAGTTCTTTAAAGAAGGCGGTGAAGAAGGAGACGTCGGGGCTTTTCGAGCATGGGCTGGTGACGATTCTGCAGTGTGCTGAGCATCCCGGGAGGTATTTCGCTAAGGTTTTGCATAAGGCGATGAAGGGTTTAGGGACAGATGATAGTACACTTCTGAGGGTGATTGTGTCGAGGGCTGAGATTGATTTGCAGTATATAAAGGCTGAGTACCAAAAGAAGTATGGCAAGAGTTTGGGTGATGCTGTTCGTTCTGAGACTTCTGGGAATTACAAGGATTTTCTTCTGGCTCTTATAGGCCCAAGTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0006950 GO:0006970 GO:0007275 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009555 GO:0009628 GO:0009639 GO:0009651 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0044706 GO:0044877 GO:0046872 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051015 GO:0051704 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

317

Amino Acids

35.49

Weight (kDa)

8.87

Isoelectric Point (pI)

31.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	16 - 79	2.7e-18	Annexin
Annexin	PF00191	88 - 152	2.7e-08	Annexin
Annexin	PF00191	172 - 237	1.4e-20	Annexin
Annexin	PF00191	247 - 312	2e-25	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68090 AT1G68090 AT5G10220 AT5G10230
fragaria_vesca	FvH4_5g36750 FvH4_5g36780
malus_domestica	MD08G1187000.v1.1 MD15G1372900.v1.1 MD16G1013400.v1.1
prunus_persica	Prupe.1G337800_v2.0.a1 Prupe.1G337800_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1
pyrus_communis	pycom08g16080 pycom15g33390
rosa_chinensis	RchiOBHm_Chr4g0433651 RchiOBHm_Chr7g0242801 RchiOBHm_Chr7g0242891
rosa_laevigata	RLG00000000871 RLG00000000878 RLG00000006741
rosa_multiflora	Rmu_sc0000312.1_g000020 Rmu_sc0004165.1_g000047 Rmu_sc0004165.1_g000053 Rmu_sc0007085.1_g000001 Rmu_sc0007085.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375100
rosa_rugosa	Rorug07G0317500 Rorug07G0317600
rosa_samantha	Rh4DG329300 Rh7AG472200 Rh7AG472500 Rh7AG473200 Rh7BG442900 Rh7BG443200 Rh7CG489400 Rh7CG490100 Rh7DG457900 Rh7DG458400
rosa_wichuraiana	Rw4G028130 Rw7G039090 Rw7G039130 Rw7G039340 Rw7G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	680
Acc16I	TGCGCA	1 cut(s)	603
Acc36I	ACCTGC	1 cut(s)	453
AccI	GTMKAC	1 cut(s)	375
AccII	CGCG	1 cut(s)	261
AciI	CCGC	7 cut(s)	96, 160, 190, 210, 259, 318, 662
AcuI	CTGAAG	1 cut(s)	345
AcyI	GRCGYC	3 cut(s)	48, 264, 677
AfaI	GTAC	5 cut(s)	158, 170, 530, 793, 854
AfiI	CCNNNNNNNGG	1 cut(s)	276
AflIII	ACRYGT	1 cut(s)	636
AgsI	TTSAA	4 cut(s)	73, 367, 422, 610
AluBI	AGCT	2 cut(s)	205, 425
AluI	AGCT	2 cut(s)	205, 425
Alw26I	GTCTC	3 cut(s)	36, 668, 893
Ama87I	CYCGRG	1 cut(s)	731
AoxI	GGCC	3 cut(s)	282, 292, 940
ApeKI	GCWGC	3 cut(s)	84, 448, 623
Asp700I	GAANNNNTTC	1 cut(s)	569
AspLEI	GCGC	1 cut(s)	604
AspS9I	GGNCC	5 cut(s)	178, 240, 283, 293, 941
AsuC2I	CCSGG	3 cut(s)	278, 732, 733
AsuHPI	GGTGA	5 cut(s)	280, 676, 715, 817, 893
AvaI	CYCGRG	1 cut(s)	731
AvaII	GGWCC	2 cut(s)	178, 240
BarI	GAAGNNNNNNTAC	2 cut(s)	512, 544
BauI	CACGAG	1 cut(s)	152
BbvI	GCAGC	3 cut(s)	71, 435, 610
BccI	CCATC	2 cut(s)	59, 278
BceAI	ACGGC	1 cut(s)	83
BcnI	CCSGG	3 cut(s)	278, 732, 733
BcoDI	GTCTC	3 cut(s)	36, 668, 893
BfaI	CTAG	1 cut(s)	471
BfmI	CTRYAG	1 cut(s)	713
BfuAI	ACCTGC	1 cut(s)	453
BisI	GCNGC	4 cut(s)	85, 318, 449, 624
BlpI	GCTNAGC	2 cut(s)	206, 723
BlsI	GCNGC	4 cut(s)	86, 319, 450, 625
Bme1390I	CCNGG	3 cut(s)	278, 732, 733
Bme18I	GGWCC	2 cut(s)	178, 240
BmeT110I	CYCGRG	1 cut(s)	731
BmgT120I	GGNCC	5 cut(s)	178, 240, 283, 293, 941
BmiI	GGNNCC	2 cut(s)	242, 295
BmrFI	CCNGG	3 cut(s)	278, 732, 733
BmsI	GCATC	3 cut(s)	505, 736, 874
Bpu10I	CCTNAGC	1 cut(s)	747
Bpu1102I	GCTNAGC	2 cut(s)	206, 723
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	3 cut(s)	278, 732, 733
Bsa29I	ATCGAT	1 cut(s)	306
BsaHI	GRCGYC	3 cut(s)	48, 264, 677
BsaJI	CCNNGG	2 cut(s)	174, 731
BsaXI	ACNNNNNCTCC	6 cut(s)	110, 140, 179, 209, 583, 613
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	23
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	2 cut(s)	174, 731
BseGI	GGATG	4 cut(s)	51, 108, 565, 727
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMII	CTCAG	6 cut(s)	325, 714, 791, 813, 840, 888
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	4 cut(s)	47, 187, 221, 607
BseXI	GCAGC	3 cut(s)	71, 435, 610
BseYI	CCCAGC	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	3 cut(s)	284, 294, 942
BshVI	ATCGAT	1 cut(s)	306
BsiHKCI	CYCGRG	1 cut(s)	731
BsiSI	CCGG	4 cut(s)	277, 291, 429, 732
BslFI	GGGAC	2 cut(s)	568, 793
BslI	CCNNNNNNNGG	1 cut(s)	276
BsmAI	GTCTC	3 cut(s)	36, 668, 893
BsmBI	CGTCTC	2 cut(s)	36, 668
BsmFI	GGGAC	2 cut(s)	568, 793
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	3 cut(s)	284, 294, 942
BsoBI	CYCGRG	1 cut(s)	731
Bsp1407I	TGTACA	1 cut(s)	528
Bsp143I	GATC	2 cut(s)	307, 354
Bsp1720I	GCTNAGC	2 cut(s)	206, 723
BspACI	CCGC	7 cut(s)	96, 160, 190, 210, 259, 318, 662
BspANI	GGCC	3 cut(s)	284, 294, 942
BspCNI	CTCAG	6 cut(s)	324, 715, 792, 814, 841, 889
BspDI	ATCGAT	1 cut(s)	306
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	2 cut(s)	242, 295
BspMAI	CTGCAG	1 cut(s)	717
BspMI	ACCTGC	1 cut(s)	453
BsrFI	RCCGGY	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	528
BsrI	ACTGG	1 cut(s)	23
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	2 cut(s)	174, 731
BssMI	GATC	2 cut(s)	307, 354
BssNI	GRCGYC	3 cut(s)	48, 264, 677
BssSI	CACGAG	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	152
Bst4CI	ACNGT	1 cut(s)	122
BstACI	GRCGYC	3 cut(s)	48, 264, 677
BstAUI	TGTACA	1 cut(s)	528
BstC8I	GCNNGC	2 cut(s)	96, 138
BstDEI	CTNAG	9 cut(s)	206, 311, 452, 723, 747, 800, 822, 849, 897
BstF5I	GGATG	4 cut(s)	51, 108, 565, 727
BstFNI	CGCG	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	604
BstKTI	GATC	2 cut(s)	310, 357
BstMAI	GTCTC	3 cut(s)	36, 668, 893
BstMBI	GATC	2 cut(s)	307, 354
BstMWI	GCNNNNNNNGC	4 cut(s)	84, 367, 620, 691
BstNSI	RCATGY	1 cut(s)	640
BstSCI	CCNGG	3 cut(s)	276, 730, 731
BstSFI	CTRYAG	1 cut(s)	713
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	3 cut(s)	71, 435, 610
Bsu15I	ATCGAT	1 cut(s)	306
BsuRI	GGCC	3 cut(s)	284, 294, 942
BsuTUI	ATCGAT	1 cut(s)	306
BtgZI	GCGATG	1 cut(s)	779
BtsCI	GGATG	4 cut(s)	51, 108, 565, 727
BtsI	GCAGTG	2 cut(s)	604, 722
BtsIMutI	CAGTG	3 cut(s)	592, 604, 722
BveI	ACCTGC	1 cut(s)	453
Cac8I	GCNNGC	2 cut(s)	96, 138
CfoI	GCGC	1 cut(s)	604
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	5 cut(s)	178, 240, 283, 293, 941
Cfr9I	CCCGGG	1 cut(s)	731
ClaI	ATCGAT	1 cut(s)	306
CseI	GACGC	2 cut(s)	56, 272
Csp6I	GTAC	5 cut(s)	157, 169, 529, 792, 853
CviAII	CATG	6 cut(s)	166, 358, 407, 502, 637, 695
CviQI	GTAC	5 cut(s)	157, 169, 529, 792, 853
DdeI	CTNAG	9 cut(s)	206, 311, 452, 723, 747, 800, 822, 849, 897
DpnI	GATC	2 cut(s)	309, 356
DpnII	GATC	2 cut(s)	307, 354
DraI	TTTAAA	1 cut(s)	654
Eco47I	GGWCC	2 cut(s)	178, 240
Eco57I	CTGAAG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	731
EcoO109I	RGGNCCY	2 cut(s)	178, 283
Esp3I	CGTCTC	2 cut(s)	36, 668
FaeI	CATG	6 cut(s)	169, 361, 410, 505, 640, 698
FaqI	GGGAC	2 cut(s)	568, 793
FatI	CATG	6 cut(s)	165, 357, 406, 501, 636, 694
FauI	CCCGC	2 cut(s)	103, 266
FblI	GTMKAC	1 cut(s)	375
Fnu4HI	GCNGC	4 cut(s)	85, 318, 449, 624
FokI	GGATG	4 cut(s)	38, 95, 572, 714
Fsp4HI	GCNGC	4 cut(s)	85, 318, 449, 624
FspAI	RTGCGCAY	1 cut(s)	603
FspBI	CTAG	1 cut(s)	471
FspI	TGCGCA	1 cut(s)	603
GlaI	GCGC	1 cut(s)	603
GluI	GCNGC	4 cut(s)	85, 318, 449, 624
GsaI	CCCAGC	1 cut(s)	136
HaeIII	GGCC	3 cut(s)	284, 294, 942
HapII	CCGG	4 cut(s)	277, 291, 429, 732
HgaI	GACGC	2 cut(s)	56, 272
HhaI	GCGC	1 cut(s)	604
Hin1I	GRCGYC	3 cut(s)	48, 264, 677
Hin1II	CATG	6 cut(s)	169, 361, 410, 505, 640, 698
Hin6I	GCGC	1 cut(s)	602
HinP1I	GCGC	1 cut(s)	602
HindIII	AAGCTT	1 cut(s)	423
HinfI	GANTC	2 cut(s)	125, 709
HpaII	CCGG	4 cut(s)	277, 291, 429, 732
HphI	GGTGA	5 cut(s)	280, 676, 715, 817, 893
Hpy166II	GTNNAC	3 cut(s)	376, 508, 794
Hpy188I	TCNGA	6 cut(s)	175, 202, 314, 633, 801, 898
Hpy188III	TCNNGA	5 cut(s)	152, 220, 339, 401, 485
Hpy8I	GTNNAC	3 cut(s)	376, 508, 794
Hpy99I	CGWCG	4 cut(s)	50, 266, 464, 682
HpyAV	CCTTC	6 cut(s)	79, 473, 514, 652, 664, 763
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	2 cut(s)	459, 677
HpyCH4V	TGCA	4 cut(s)	361, 715, 757, 835
HpyF10VI	GCNNNNNNNGC	4 cut(s)	84, 367, 620, 691
HpyF3I	CTNAG	9 cut(s)	206, 311, 452, 723, 747, 800, 822, 849, 897
HpySE526I	ACGT	2 cut(s)	459, 677
Hsp92I	GRCGYC	3 cut(s)	48, 264, 677
Hsp92II	CATG	6 cut(s)	169, 361, 410, 505, 640, 698
HspAI	GCGC	1 cut(s)	602
Kzo9I	GATC	2 cut(s)	307, 354
LmnI	GCTCC	1 cut(s)	594
Lsp1109I	GCAGC	3 cut(s)	71, 435, 610
LweI	GCATC	3 cut(s)	505, 736, 874
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	2 cut(s)	459, 677
MaeIII	GTNAC	3 cut(s)	122, 455, 703
MalI	GATC	2 cut(s)	309, 356
MboI	GATC	2 cut(s)	307, 354
MboII	GAAGA	3 cut(s)	577, 679, 917
MluCI	AATT	2 cut(s)	548, 910
MlyI	GAGTC	1 cut(s)	119
MroXI	GAANNNNTTC	1 cut(s)	569
MseI	TTAA	1 cut(s)	653
MslI	CAYNNNNRTG	1 cut(s)	609
MspI	CCGG	4 cut(s)	277, 291, 429, 732
MspR9I	CCNGG	3 cut(s)	278, 732, 733
Mva1269I	GAATGC	1 cut(s)	616
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	4 cut(s)	84, 367, 620, 691
NciI	CCSGG	3 cut(s)	278, 732, 733
NdeII	GATC	2 cut(s)	307, 354
NlaIII	CATG	6 cut(s)	169, 361, 410, 505, 640, 698
NlaIV	GGNNCC	2 cut(s)	242, 295
NmuCI	GTSAC	2 cut(s)	122, 703
NsbI	TGCGCA	1 cut(s)	603
NspI	RCATGY	1 cut(s)	640
PciI	ACATGT	1 cut(s)	636
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PctI	GAATGC	1 cut(s)	616
PdmI	GAANNNNTTC	1 cut(s)	569
PfeI	GAWTC	1 cut(s)	709
PfoI	TCCNGGA	1 cut(s)	276
PkrI	GCNGC	4 cut(s)	86, 319, 450, 625
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PpuMI	RGGWCCY	1 cut(s)	178
PscI	ACATGT	1 cut(s)	636
Psp5II	RGGWCCY	1 cut(s)	178
PspFI	CCCAGC	1 cut(s)	132
PspN4I	GGNNCC	2 cut(s)	242, 295
PspPI	GGNCC	5 cut(s)	178, 240, 283, 293, 941
PspPPI	RGGWCCY	1 cut(s)	178
PstI	CTGCAG	1 cut(s)	717
RsaI	GTAC	5 cut(s)	158, 170, 530, 793, 854
RsaNI	GTAC	5 cut(s)	157, 169, 529, 792, 853
RseI	CAYNNNNRTG	1 cut(s)	609
SaqAI	TTAA	1 cut(s)	653
SatI	GCNGC	4 cut(s)	85, 318, 449, 624
Sau3AI	GATC	2 cut(s)	307, 354
Sau96I	GGNCC	5 cut(s)	178, 240, 283, 293, 941
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	3 cut(s)	278, 732, 733
SfaNI	GCATC	3 cut(s)	505, 736, 874
SfcI	CTRYAG	1 cut(s)	713
SinI	GGWCC	2 cut(s)	178, 240
SmaI	CCCGGG	1 cut(s)	733
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	2 cut(s)	548, 910
SsiI	CCGC	7 cut(s)	96, 160, 190, 210, 259, 318, 662
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	3 cut(s)	276, 730, 731
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	2 cut(s)	462, 680
TaqI	TCGA	5 cut(s)	306, 340, 414, 690, 815
TasI	AATT	2 cut(s)	548, 910
TatI	WGTACW	3 cut(s)	168, 528, 791
TauI	GCSGC	1 cut(s)	320
TfiI	GAWTC	1 cut(s)	709
Tru1I	TTAA	1 cut(s)	653
Tru9I	TTAA	1 cut(s)	653
TscAI	CASTG	3 cut(s)	592, 604, 722
TseFI	GTSAC	2 cut(s)	122, 703
TseI	GCWGC	3 cut(s)	84, 448, 623
Tsp45I	GTSAC	2 cut(s)	122, 703
TspDTI	ATGAA	4 cut(s)	490, 492, 562, 782
TspGWI	ACGGA	1 cut(s)	572
TspMI	CCCGGG	1 cut(s)	731
TspRI	CASTG	3 cut(s)	592, 604, 722
VpaK11BI	GGWCC	2 cut(s)	178, 240
XceI	RCATGY	1 cut(s)	640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	863
XmaI	CCCGGG	1 cut(s)	731
XmiI	GTMKAC	1 cut(s)	375
XmnI	GAANNNNTTC	1 cut(s)	569
XspI	CTAG	1 cut(s)	471
ZraI	GACGTC	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.