Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001905

Physical Location & Seq

Genomic Coordinates Reverse (-)

55977502 .. 55978333

Gene Structure 832 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00375100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCATCTGTGATCATCCCACCGGTGCCACCTTCGCTGCGTGATGATGCTGCTCATCTGTACCAGGCCTTTAAAGGTCAGGCAGTAGTCAATATCCTTGCTCACAGGAATATTGCAACACAGCGTGATGCCATCCAAAAAGAATACAACACCATGCACTCCGAAGATCTCAACAAGCGCTTGTCCTCCGAACTTAGTGGACATGTCAAGAAAGCAATACTGTTGTGGATGCCTGGTCCGGCAACGCGTGATGCAAACATAGTAAGGCACGCATTGGATGGTGGTGTTGATCCCAAAGCGGCCAGTGAAGTCATATGCTCTCGTACTCCGTCCCAGCTGCGACAATTCAAGCAAATCTACTTTTCAAATTTCAGTGTTGGCCTCGAGGATGACATTGCATCTAAAGCCTCAGGAGATCACAAAAAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0006950 GO:0006970 GO:0007275 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009555 GO:0009628 GO:0009639 GO:0009651 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0044706 GO:0044877 GO:0046872 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051015 GO:0051704 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

143

Amino Acids

15.69

Weight (kDa)

9.1

Isoelectric Point (pI)

57.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	16 - 75	7.7e-11	Annexin
Annexin	PF00191	83 - 142	3.9e-10	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68090 AT1G68090 AT5G10220 AT5G10230
fragaria_vesca	FvH4_5g36750 FvH4_5g36780
malus_domestica	MD08G1187000.v1.1 MD15G1372900.v1.1 MD16G1013400.v1.1
prunus_persica	Prupe.1G337800_v2.0.a1 Prupe.1G337800_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1
pyrus_communis	pycom08g16080 pycom15g33390
rosa_chinensis	RchiOBHm_Chr4g0433651 RchiOBHm_Chr7g0242801 RchiOBHm_Chr7g0242891
rosa_laevigata	RLG00000000871 RLG00000000878 RLG00000006741
rosa_multiflora	Rmu_sc0000312.1_g000020 Rmu_sc0004165.1_g000047 Rmu_sc0004165.1_g000053 Rmu_sc0007085.1_g000001 Rmu_sc0007085.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375100
rosa_rugosa	Rorug07G0317500 Rorug07G0317600
rosa_samantha	Rh4DG329300 Rh7AG472200 Rh7AG472500 Rh7AG473200 Rh7BG442900 Rh7BG443200 Rh7CG489400 Rh7CG490100 Rh7DG457900 Rh7DG458400
rosa_wichuraiana	Rw4G028130 Rw7G039090 Rw7G039130 Rw7G039340 Rw7G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	383
AccB1I	GGYRCC	1 cut(s)	25
AccII	CGCG	1 cut(s)	247
AciI	CCGC	1 cut(s)	299
AclWI	GGATC	1 cut(s)	284
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	367
AdeI	CACNNNGTG	1 cut(s)	125
AfaI	GTAC	2 cut(s)	62, 325
AfeI	AGCGCT	1 cut(s)	179
AflIII	ACRYGT	2 cut(s)	202, 245
AgeI	ACCGGT	1 cut(s)	22
AgsI	TTSAA	2 cut(s)	349, 366
AjnI	CCWGG	2 cut(s)	63, 232
AluBI	AGCT	1 cut(s)	337
AluI	AGCT	1 cut(s)	337
AlwI	GGATC	1 cut(s)	284
Ama87I	CYCGRG	1 cut(s)	383
Aor51HI	AGCGCT	1 cut(s)	179
AoxI	GGCC	3 cut(s)	66, 300, 379
ApeKI	GCWGC	3 cut(s)	37, 50, 337
ApoI	RAATTY	1 cut(s)	367
AsiGI	ACCGGT	1 cut(s)	22
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	236
AvaI	CYCGRG	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	236
AxyI	CCTNAGG	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	25
BbvI	GCAGC	3 cut(s)	24, 37, 324
BccI	CCATC	2 cut(s)	140, 272
BciT130I	CCWGG	2 cut(s)	65, 234
BclI	TGATCA	1 cut(s)	12
BfaI	CTAG	1 cut(s)	430
BfoI	RGCGCY	1 cut(s)	181
BglII	AGATCT	1 cut(s)	166
BisI	GCNGC	4 cut(s)	38, 51, 300, 338
BlsI	GCNGC	4 cut(s)	39, 52, 301, 339
Bme1390I	CCNGG	2 cut(s)	65, 234
Bme18I	GGWCC	1 cut(s)	236
BmeT110I	CYCGRG	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	2 cut(s)	65, 234
BmsI	GCATC	6 cut(s)	14, 37, 118, 219, 241, 407
BsaWI	WCCGGW	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	303
Bse21I	CCTNAGG	1 cut(s)	409
Bse3DI	GCAATG	1 cut(s)	393
BseBI	CCWGG	2 cut(s)	65, 234
BseGI	GGATG	5 cut(s)	15, 132, 234, 283, 394
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	303
BseXI	GCAGC	3 cut(s)	24, 37, 324
BseYI	CCCAGC	1 cut(s)	333
Bsh1236I	CGCG	1 cut(s)	247
BshFI	GGCC	3 cut(s)	68, 302, 381
BshNI	GGYRCC	1 cut(s)	25
BshTI	ACCGGT	1 cut(s)	22
BsiHKCI	CYCGRG	1 cut(s)	383
BsiSI	CCGG	2 cut(s)	23, 239
BslFI	GGGAC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	316
BsnI	GGCC	3 cut(s)	68, 302, 381
BsoBI	CYCGRG	1 cut(s)	383
Bsp143I	GATC	4 cut(s)	12, 166, 289, 415
BspACI	CCGC	1 cut(s)	299
BspANI	GGCC	3 cut(s)	68, 302, 381
BspCNI	CTCAG	1 cut(s)	422
BspFNI	CGCG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	303
BssAI	RCCGGY	1 cut(s)	22
BssMI	GATC	4 cut(s)	12, 166, 289, 415
Bst2UI	CCWGG	2 cut(s)	65, 234
Bst4CI	ACNGT	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	2 cut(s)	194, 409
BstF5I	GGATG	5 cut(s)	15, 132, 234, 283, 394
BstFNI	CGCG	1 cut(s)	247
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	4 cut(s)	15, 169, 292, 418
BstMBI	GATC	4 cut(s)	12, 166, 289, 415
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 404
BstNI	CCWGG	2 cut(s)	65, 234
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	2 cut(s)	63, 232
BstUI	CGCG	1 cut(s)	247
BstV1I	GCAGC	3 cut(s)	24, 37, 324
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
Bsu36I	CCTNAGG	1 cut(s)	409
BsuRI	GGCC	3 cut(s)	68, 302, 381
BtsCI	GGATG	5 cut(s)	15, 132, 234, 283, 394
BtsIMutI	CAGTG	2 cut(s)	310, 379
Cac8I	GCNNGC	1 cut(s)	270
CfoI	GCGC	1 cut(s)	180
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	236
Csp6I	GTAC	2 cut(s)	61, 324
CspAI	ACCGGT	1 cut(s)	22
CviAII	CATG	2 cut(s)	154, 203
CviJI	RGCY	6 cut(s)	68, 302, 337, 381, 407, 429
CviKI_1	RGCY	6 cut(s)	68, 302, 337, 381, 407, 429
CviQI	GTAC	2 cut(s)	61, 324
DdeI	CTNAG	2 cut(s)	194, 409
DpnI	GATC	4 cut(s)	14, 168, 291, 417
DpnII	GATC	4 cut(s)	12, 166, 289, 415
DraI	TTTAAA	1 cut(s)	73
DraIII	CACNNNGTG	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	300
Eco147I	AGGCCT	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	236
Eco47III	AGCGCT	1 cut(s)	179
Eco81I	CCTNAGG	1 cut(s)	409
Eco88I	CYCGRG	1 cut(s)	383
EcoRII	CCWGG	2 cut(s)	63, 232
FaeI	CATG	2 cut(s)	157, 206
FaiI	YATR	5 cut(s)	155, 204, 260, 314, 316
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	2 cut(s)	153, 202
FauNDI	CATATG	1 cut(s)	314
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	4 cut(s)	38, 51, 300, 338
FokI	GGATG	5 cut(s)	2, 119, 241, 290, 401
Fsp4HI	GCNGC	4 cut(s)	38, 51, 300, 338
FspBI	CTAG	1 cut(s)	430
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	4 cut(s)	38, 51, 300, 338
GsaI	CCCAGC	1 cut(s)	337
HaeII	RGCGCY	1 cut(s)	181
HaeIII	GGCC	3 cut(s)	68, 302, 381
HapII	CCGG	2 cut(s)	23, 239
HhaI	GCGC	1 cut(s)	180
Hin1II	CATG	2 cut(s)	157, 206
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HpaII	CCGG	2 cut(s)	23, 239
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	2 cut(s)	163, 190
Hpy188III	TCNNGA	2 cut(s)	208, 411
Hpy8I	GTNNAC	1 cut(s)	200
HpyAV	CCTTC	1 cut(s)	42
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4V	TGCA	4 cut(s)	116, 157, 254, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 404
HpyF3I	CTNAG	2 cut(s)	194, 409
Hsp92II	CATG	2 cut(s)	157, 206
HspAI	GCGC	1 cut(s)	178
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	4 cut(s)	12, 166, 289, 415
Lsp1109I	GCAGC	3 cut(s)	24, 37, 324
LweI	GCATC	6 cut(s)	14, 37, 118, 219, 241, 407
MaeI	CTAG	1 cut(s)	430
MalI	GATC	4 cut(s)	14, 168, 291, 417
MboI	GATC	4 cut(s)	12, 166, 289, 415
MboII	GAAGA	1 cut(s)	176
MflI	RGATCY	1 cut(s)	166
MluCI	AATT	2 cut(s)	344, 367
MluI	ACGCGT	1 cut(s)	245
MnlI	CCTC	4 cut(s)	196, 379, 392, 418
MseI	TTAA	1 cut(s)	72
MspA1I	CMGCKG	1 cut(s)	337
MspI	CCGG	2 cut(s)	23, 239
MspR9I	CCNGG	2 cut(s)	65, 234
MvaI	CCWGG	2 cut(s)	65, 234
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	2 cut(s)	34, 404
NdeI	CATATG	1 cut(s)	314
NdeII	GATC	4 cut(s)	12, 166, 289, 415
NlaIII	CATG	2 cut(s)	157, 206
NlaIV	GGNNCC	1 cut(s)	27
NspI	RCATGY	1 cut(s)	206
PaeR7I	CTCGAG	1 cut(s)	383
PceI	AGGCCT	1 cut(s)	68
PciI	ACATGT	1 cut(s)	202
PinAI	ACCGGT	1 cut(s)	22
PkrI	GCNGC	4 cut(s)	39, 52, 301, 339
PscI	ACATGT	1 cut(s)	202
Psp6I	CCWGG	2 cut(s)	63, 232
PspFI	CCCAGC	1 cut(s)	333
PspGI	CCWGG	2 cut(s)	63, 232
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	236
PspXI	VCTCGAGB	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	166
PvuII	CAGCTG	1 cut(s)	337
RsaI	GTAC	2 cut(s)	62, 325
RsaNI	GTAC	2 cut(s)	61, 324
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	4 cut(s)	38, 51, 300, 338
Sau3AI	GATC	4 cut(s)	12, 166, 289, 415
Sau96I	GGNCC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	65, 234
SetI	ASST	3 cut(s)	34, 79, 339
SfaNI	GCATC	6 cut(s)	14, 37, 118, 219, 241, 407
Sfr274I	CTCGAG	1 cut(s)	383
SgrAI	CRCCGGYG	1 cut(s)	22
SinI	GGWCC	1 cut(s)	236
SlaI	CTCGAG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	2 cut(s)	344, 367
SseBI	AGGCCT	1 cut(s)	68
SsiI	CCGC	1 cut(s)	299
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	1 cut(s)	430
StuI	AGGCCT	1 cut(s)	68
StyD4I	CCNGG	2 cut(s)	63, 232
TaaI	ACNGT	1 cut(s)	222
TaqI	TCGA	1 cut(s)	384
TasI	AATT	2 cut(s)	344, 367
TauI	GCSGC	1 cut(s)	302
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	2 cut(s)	310, 379
TseI	GCWGC	3 cut(s)	37, 50, 337
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	2 cut(s)	310, 379
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	1 cut(s)	367
XceI	RCATGY	1 cut(s)	206
XhoI	CTCGAG	1 cut(s)	383
XspI	CTAG	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.