Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001905

Physical Location & Seq

Genomic Coordinates Reverse (-)

65859359 .. 65861340

Gene Structure 1982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG490100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCGACTTTAACCACACCCCAACCCCCGACCTCACCGCGCACCGACGCCATCGACCTCCGCAAAGCCTTCAAGGGCTTCGGCTGCGACACTGCCGCCGTCATCAACATCCTCGCCCACCGCGACGCCACCCAACGCGCCCAAATCGCCCGCGAGTACAGTACCATGTACTCCGAGGACTTCACCAAGCGCCTCTCCTCCGAGCTCAGCGGAAATACCAAGAAAGCCCTCCTCCTCTGGATGCCCGACCCCGCCACCCGCGACGCCACCATCGTCCGTCACGCCCTCACCGGCTCCGATCACCGCGCCGCCACCGAGGTCATCTGCTCCCGAACCCCCTCCCAGATCGCCCTATTCAAGCAAGTTTACTCCTCGATTTTCAATACCCATCTAGAACGCGACATCGGACTGTACACCTCCGGCGACCTCAAGAATCTCCTGCTCGGTTTCGTCACCACGCAGAGGTACGAGGGCTTGGAATTCGACAGGGTAGCGGCGGAGAACGATGCGAAATCTCTGTACATGGCCGGAGAGAAAAGACTGGGGACTGATGAGAAGAAATTTATCGACGTTTTTAGTAATCGAAGCCGGGCTCATCTGAATGCGGTGAGCTCGGCTTATGAGAACATGTATGGGAATTCACTGAGAAAAGCGGTGAAGAAGGAGACTTCCGGGAACTTTGAGCATGGCCTGGTGACGATTCTGGAGTGTGCTGATCATCCAGGGAGGTACTTTGCTAGGATACTGCATAAAGCGATGAAGGGTTTGGGGACGGATGATAGTACATTGTTGAGAGTGGTGGTGACGAGGGCGGAGATTGATATGATGTATGTGAAGATTGAGTACCAGAAGAAGTATGGACAACATGATGGATGTTTCATTCAAATACTTTTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0006950 GO:0006970 GO:0007275 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009555 GO:0009628 GO:0009639 GO:0009651 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0044706 GO:0044877 GO:0046872 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051015 GO:0051704 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

299

Amino Acids

33.56

Weight (kDa)

9.01

Isoelectric Point (pI)

33.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	16 - 79	4.3e-17	Annexin
Annexin	PF00191	88 - 148	2.7e-09	Annexin
Annexin	PF00191	169 - 234	8.6e-21	Annexin
Annexin	PF00191	244 - 288	1.1e-13	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68090 AT1G68090 AT5G10220 AT5G10230
fragaria_vesca	FvH4_5g36750 FvH4_5g36780
malus_domestica	MD08G1187000.v1.1 MD15G1372900.v1.1 MD16G1013400.v1.1
prunus_persica	Prupe.1G337800_v2.0.a1 Prupe.1G337800_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1
pyrus_communis	pycom08g16080 pycom15g33390
rosa_chinensis	RchiOBHm_Chr4g0433651 RchiOBHm_Chr7g0242801 RchiOBHm_Chr7g0242891
rosa_laevigata	RLG00000000871 RLG00000000878 RLG00000006741
rosa_multiflora	Rmu_sc0000312.1_g000020 Rmu_sc0004165.1_g000047 Rmu_sc0004165.1_g000053 Rmu_sc0007085.1_g000001 Rmu_sc0007085.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375100
rosa_rugosa	Rorug07G0317500 Rorug07G0317600
rosa_samantha	Rh4DG329300 Rh7AG472200 Rh7AG472500 Rh7AG473200 Rh7BG442900 Rh7BG443200 Rh7CG489400 Rh7CG490100 Rh7DG457900 Rh7DG458400
rosa_wichuraiana	Rw4G028130 Rw7G039090 Rw7G039130 Rw7G039340 Rw7G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	7 cut(s)	40, 123, 138, 153, 261, 306, 399
AcoI	YGGCCR	1 cut(s)	525
AcsI	RAATTY	3 cut(s)	479, 560, 637
AcyI	GRCGYC	3 cut(s)	48, 126, 264
AfaI	GTAC	9 cut(s)	158, 163, 170, 413, 467, 521, 731, 784, 845
AfiI	CCNNNNNNNGG	1 cut(s)	462
AflIII	ACRYGT	1 cut(s)	627
AgsI	TTSAA	5 cut(s)	73, 358, 382, 884, 895
AjnI	CCWGG	2 cut(s)	690, 721
AluBI	AGCT	2 cut(s)	205, 612
AluI	AGCT	2 cut(s)	205, 612
Alw21I	GWGCWC	2 cut(s)	207, 614
Alw26I	GTCTC	1 cut(s)	659
AoxI	GGCC	2 cut(s)	525, 688
ApeKI	GCWGC	1 cut(s)	84
ApoI	RAATTY	3 cut(s)	479, 560, 637
AspLEI	GCGC	4 cut(s)	42, 140, 192, 308
AsuC2I	CCSGG	2 cut(s)	590, 673
AsuHPI	GGTGA	9 cut(s)	27, 175, 280, 293, 445, 619, 667, 706, 814
BanII	GRGCYC	3 cut(s)	207, 595, 614
BarI	GAAGNNNNNNTAC	2 cut(s)	827, 859
Bbv12I	GWGCWC	2 cut(s)	207, 614
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	4 cut(s)	59, 278, 396, 863
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	2 cut(s)	692, 723
BciVI	GTATCC	1 cut(s)	735
BclI	TGATCA	1 cut(s)	715
BcnI	CCSGG	2 cut(s)	590, 673
BcoDI	GTCTC	1 cut(s)	659
BfaI	CTAG	2 cut(s)	392, 738
BfoI	RGCGCY	1 cut(s)	193
BfuI	GTATCC	1 cut(s)	735
BisI	GCNGC	4 cut(s)	85, 96, 309, 495
BlpI	GCTNAGC	1 cut(s)	206
BlsI	GCNGC	4 cut(s)	86, 97, 310, 496
Bme1390I	CCNGG	4 cut(s)	590, 673, 692, 723
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	4 cut(s)	590, 673, 692, 723
BmrI	ACTGGG	1 cut(s)	551
BmsI	GCATC	2 cut(s)	231, 496
BmuI	ACTGGG	1 cut(s)	551
BpmI	CTGGAG	1 cut(s)	725
Bpu1102I	GCTNAGC	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	2 cut(s)	590, 673
BsaHI	GRCGYC	3 cut(s)	48, 126, 264
BsaJI	CCNNGG	3 cut(s)	174, 315, 722
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	546
BseBI	CCWGG	2 cut(s)	692, 723
BseDI	CCNNGG	3 cut(s)	174, 315, 722
BseGI	GGATG	5 cut(s)	108, 246, 718, 781, 878
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseMII	CTCAG	2 cut(s)	220, 635
BseNI	ACTGG	1 cut(s)	546
BseRI	GAGGAG	4 cut(s)	187, 221, 224, 361
BseXI	GCAGC	1 cut(s)	71
Bsh1236I	CGCG	7 cut(s)	40, 123, 138, 153, 261, 306, 399
BshFI	GGCC	2 cut(s)	527, 690
BsiHKAI	GWGCWC	2 cut(s)	207, 614
BsiSI	CCGG	5 cut(s)	291, 420, 528, 589, 672
BslFI	GGGAC	2 cut(s)	559, 784
BslI	CCNNNNNNNGG	1 cut(s)	462
BsmAI	GTCTC	1 cut(s)	659
BsmFI	GGGAC	2 cut(s)	559, 784
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	2 cut(s)	527, 690
Bsp1286I	GDGCHC	3 cut(s)	207, 595, 614
Bsp1407I	TGTACA	2 cut(s)	411, 519
Bsp143I	GATC	3 cut(s)	298, 345, 715
Bsp1720I	GCTNAGC	1 cut(s)	206
BspANI	GGCC	2 cut(s)	527, 690
BspCNI	CTCAG	2 cut(s)	219, 636
BspFNI	CGCG	7 cut(s)	40, 123, 138, 153, 261, 306, 399
BspLI	GGNNCC	1 cut(s)	295
BsrFI	RCCGGY	1 cut(s)	290
BsrGI	TGTACA	2 cut(s)	411, 519
BsrI	ACTGG	1 cut(s)	546
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	3 cut(s)	174, 315, 722
BssMI	GATC	3 cut(s)	298, 345, 715
BssNI	GRCGYC	3 cut(s)	48, 126, 264
Bst2UI	CCWGG	2 cut(s)	692, 723
Bst4CI	ACNGT	2 cut(s)	161, 411
BstACI	GRCGYC	3 cut(s)	48, 126, 264
BstAUI	TGTACA	2 cut(s)	411, 519
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	2 cut(s)	206, 644
BstF5I	GGATG	5 cut(s)	108, 246, 718, 781, 878
BstFNI	CGCG	7 cut(s)	40, 123, 138, 153, 261, 306, 399
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	4 cut(s)	42, 140, 192, 308
BstKTI	GATC	3 cut(s)	301, 348, 718
BstMAI	GTCTC	1 cut(s)	659
BstMBI	GATC	3 cut(s)	298, 345, 715
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 146
BstNI	CCWGG	2 cut(s)	692, 723
BstNSI	RCATGY	1 cut(s)	631
BstSCI	CCNGG	4 cut(s)	588, 671, 690, 721
BstUI	CGCG	7 cut(s)	40, 123, 138, 153, 261, 306, 399
BstV1I	GCAGC	1 cut(s)	71
BsuI	GTATCC	1 cut(s)	735
BsuRI	GGCC	2 cut(s)	527, 690
BtgZI	GCGATG	1 cut(s)	770
BtsCI	GGATG	5 cut(s)	108, 246, 718, 781, 878
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	2 cut(s)	90, 641
Cac8I	GCNNGC	1 cut(s)	151
CfoI	GCGC	4 cut(s)	42, 140, 192, 308
Cfr10I	RCCGGY	1 cut(s)	290
CseI	GACGC	3 cut(s)	56, 134, 272
Csp6I	GTAC	9 cut(s)	157, 162, 169, 412, 466, 520, 730, 783, 844
CviAII	CATG	5 cut(s)	166, 523, 628, 686, 866
CviQI	GTAC	9 cut(s)	157, 162, 169, 412, 466, 520, 730, 783, 844
DdeI	CTNAG	2 cut(s)	206, 644
DpnI	GATC	3 cut(s)	300, 347, 717
DpnII	GATC	3 cut(s)	298, 345, 715
EaeI	YGGCCR	1 cut(s)	525
EciI	GGCGGA	2 cut(s)	512, 827
Ecl136II	GAGCTC	2 cut(s)	205, 612
Eco24I	GRGCYC	3 cut(s)	207, 595, 614
Eco53kI	GAGCTC	2 cut(s)	205, 612
EcoICRI	GAGCTC	2 cut(s)	205, 612
EcoRI	GAATTC	2 cut(s)	479, 637
EcoRII	CCWGG	2 cut(s)	690, 721
EcoT38I	GRGCYC	3 cut(s)	207, 595, 614
FaeI	CATG	5 cut(s)	169, 526, 631, 689, 869
FaqI	GGGAC	2 cut(s)	559, 784
FatI	CATG	5 cut(s)	165, 522, 627, 685, 865
FauI	CCCGC	3 cut(s)	158, 259, 266
FbaI	TGATCA	1 cut(s)	715
Fnu4HI	GCNGC	4 cut(s)	85, 96, 309, 495
FokI	GGATG	5 cut(s)	95, 253, 705, 788, 885
FriOI	GRGCYC	3 cut(s)	207, 595, 614
Fsp4HI	GCNGC	4 cut(s)	85, 96, 309, 495
FspBI	CTAG	2 cut(s)	392, 738
GlaI	GCGC	4 cut(s)	41, 139, 191, 307
GluI	GCNGC	4 cut(s)	85, 96, 309, 495
GsuI	CTGGAG	1 cut(s)	725
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	2 cut(s)	527, 690
HapII	CCGG	5 cut(s)	291, 420, 528, 589, 672
HgaI	GACGC	3 cut(s)	56, 134, 272
HhaI	GCGC	4 cut(s)	42, 140, 192, 308
Hin1I	GRCGYC	3 cut(s)	48, 126, 264
Hin1II	CATG	5 cut(s)	169, 526, 631, 689, 869
Hin6I	GCGC	4 cut(s)	40, 138, 190, 306
HinP1I	GCGC	4 cut(s)	40, 138, 190, 306
HinfI	GANTC	2 cut(s)	433, 700
HpaII	CCGG	5 cut(s)	291, 420, 528, 589, 672
HphI	GGTGA	9 cut(s)	27, 175, 280, 293, 445, 619, 667, 706, 814
Hpy166II	GTNNAC	2 cut(s)	367, 414
Hpy188I	TCNGA	5 cut(s)	175, 202, 298, 407, 600
Hpy188III	TCNNGA	5 cut(s)	238, 330, 392, 430, 704
Hpy8I	GTNNAC	2 cut(s)	367, 414
Hpy99I	CGWCG	4 cut(s)	50, 128, 266, 572
HpyAV	CCTTC	3 cut(s)	79, 655, 754
HpyCH4III	ACNGT	2 cut(s)	161, 411
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	1 cut(s)	748
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 146
HpyF3I	CTNAG	2 cut(s)	206, 644
HpySE526I	ACGT	1 cut(s)	570
Hsp92I	GRCGYC	3 cut(s)	48, 126, 264
Hsp92II	CATG	5 cut(s)	169, 526, 631, 689, 869
HspAI	GCGC	4 cut(s)	40, 138, 190, 306
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	3 cut(s)	298, 345, 715
LmnI	GCTCC	2 cut(s)	299, 332
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	2 cut(s)	231, 496
MaeI	CTAG	2 cut(s)	392, 738
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	4 cut(s)	278, 451, 694, 802
MalI	GATC	3 cut(s)	300, 347, 717
MboI	GATC	3 cut(s)	298, 345, 715
MboII	GAAGA	4 cut(s)	568, 670, 847, 862
MhlI	GDGCHC	3 cut(s)	207, 595, 614
MluCI	AATT	3 cut(s)	479, 560, 637
MseI	TTAA	1 cut(s)	11
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	5 cut(s)	291, 420, 528, 589, 672
MspR9I	CCNGG	4 cut(s)	590, 673, 692, 723
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	2 cut(s)	692, 723
MvnI	CGCG	7 cut(s)	40, 123, 138, 153, 261, 306, 399
MwoI	GCNNNNNNNGC	2 cut(s)	84, 146
NciI	CCSGG	2 cut(s)	590, 673
NdeII	GATC	3 cut(s)	298, 345, 715
NlaIII	CATG	5 cut(s)	169, 526, 631, 689, 869
NlaIV	GGNNCC	1 cut(s)	295
NmeAIII	GCCGAG	1 cut(s)	593
NmuCI	GTSAC	4 cut(s)	278, 451, 694, 802
NspI	RCATGY	1 cut(s)	631
PciI	ACATGT	1 cut(s)	627
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 270
PctI	GAATGC	1 cut(s)	607
PfeI	GAWTC	2 cut(s)	433, 700
PfoI	TCCNGGA	1 cut(s)	671
PkrI	GCNGC	4 cut(s)	86, 97, 310, 496
PscI	ACATGT	1 cut(s)	627
Psp124BI	GAGCTC	2 cut(s)	207, 614
Psp6I	CCWGG	2 cut(s)	690, 721
PspGI	CCWGG	2 cut(s)	690, 721
PspN4I	GGNNCC	1 cut(s)	295
RsaI	GTAC	9 cut(s)	158, 163, 170, 413, 467, 521, 731, 784, 845
RsaNI	GTAC	9 cut(s)	157, 162, 169, 412, 466, 520, 730, 783, 844
RseI	CAYNNNNRTG	1 cut(s)	600
SacI	GAGCTC	2 cut(s)	207, 614
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	4 cut(s)	85, 96, 309, 495
Sau3AI	GATC	3 cut(s)	298, 345, 715
ScrFI	CCNGG	4 cut(s)	590, 673, 692, 723
SduI	GDGCHC	3 cut(s)	207, 595, 614
SfaNI	GCATC	2 cut(s)	231, 496
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	3 cut(s)	479, 560, 637
SspMI	CTAG	2 cut(s)	392, 738
SstI	GAGCTC	2 cut(s)	207, 614
StyD4I	CCNGG	4 cut(s)	588, 671, 690, 721
TaaI	ACNGT	2 cut(s)	161, 411
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	5 cut(s)	54, 374, 483, 567, 583
TasI	AATT	3 cut(s)	479, 560, 637
TatI	WGTACW	5 cut(s)	156, 168, 411, 519, 782
TauI	GCSGC	3 cut(s)	98, 311, 497
TfiI	GAWTC	2 cut(s)	433, 700
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	2 cut(s)	97, 648
TseFI	GTSAC	4 cut(s)	278, 451, 694, 802
TseI	GCWGC	1 cut(s)	84
Tsp45I	GTSAC	4 cut(s)	278, 451, 694, 802
TspDTI	ATGAA	2 cut(s)	773, 868
TspGWI	ACGGA	2 cut(s)	266, 788
TspRI	CASTG	2 cut(s)	97, 648
XapI	RAATTY	3 cut(s)	479, 560, 637
XbaI	TCTAGA	1 cut(s)	391
XceI	RCATGY	1 cut(s)	631
XcmI	CCANNNNNNNNNTGG	1 cut(s)	854
XspI	CTAG	2 cut(s)	392, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.