Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001905

Physical Location & Seq

Genomic Coordinates Reverse (-)

3206868 .. 3208830

Gene Structure 1963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCGTCTCTCAAAATTCCAGCAAATATTCCTCTTCCCGAAGAAGACTCCGAGCAGCTCCACAAGGCATTCAAAGGATGGGGAACTAATGAAGGGATGATCATATCAATTTTGGCTCATAGAAACGCAACGCAACGCAGTTTCATTCGTGCCGTTTATGCTGCTAACTACAATAAGGATCTTCTCAAGGAATTAGACGGAGAGCTTTCTGGTGACTTTGAGAGAGTTGTGATGTTGTGGACTCTTGATCCAACGGAGAGAGATGCGTATTTGGCCAATGAATCTACCAAATTGTTCACCAAAAACATTTGGGTCCTAGTTGAAATCGCTTGTACTAGACCTTCTCTTGAGTTTTTCAAGACCAAGCAAGCATACCATGTTCGCTACAAGACCTCTCTCGAGGAAGATGTTGCATACCATACATCTGGAAATATCCGAAAGCTATTGGTTCCTCTTGTGAGCACCTTCAGGTACGATGGAAATGCTGATGAGGTCAACGTGAAGCTGGCTAGATCCGAAGCTAAGACACTTCACAAGAAGATCACTGAGAAGGCTTACACTGATGAAGATCTCATCAGAATCTTGACAACAAGGAGCAAAGCACAGATCAATGCAACACTCAATCACTTCAAGGACAAGTTTGGAAGTTCCATTAACAAGTTTCTCAAAGAAGATTCGAACGATGATTATGTTCAATTACTCAAAACCGCGATCAAATGCTTGACATATCCAGAGAAGTACTTTGAGAAGGTTCTACGTCGAGCCATCAACAGGATGGGAACAGACGAGTGGGCACTTACTAGAGTGGTCACTACAAGAGCAGAGGTCGACCTGGAGCGGATCAAAGAAGAATACTTACGCAGGAACAGTGTTCCTCTTGATCGAGCCATTGCTAATGACACTTCTGGTGACTACAAGGATATGCTTCTCGCCCTTCTTGGACATGACCATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006950 GO:0006970 GO:0008150 GO:0008643 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009579 GO:0009628 GO:0009639 GO:0009651 GO:0010035 GO:0015774 GO:0016020 GO:0033036 GO:0033037 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

318

Amino Acids

36.57

Weight (kDa)

7.73

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	16 - 79	5.4e-22	Annexin
Annexin	PF00191	87 - 152	3.2e-11	Annexin
Annexin	PF00191	173 - 234	2.2e-11	Annexin
Annexin	PF00191	247 - 312	2.4e-18	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68090 AT1G68090 AT5G10220 AT5G10230
fragaria_vesca	FvH4_5g36750 FvH4_5g36780
malus_domestica	MD08G1187000.v1.1 MD15G1372900.v1.1 MD16G1013400.v1.1
prunus_persica	Prupe.1G337800_v2.0.a1 Prupe.1G337800_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1
pyrus_communis	pycom08g16080 pycom15g33390
rosa_chinensis	RchiOBHm_Chr4g0433651 RchiOBHm_Chr7g0242801 RchiOBHm_Chr7g0242891
rosa_laevigata	RLG00000000871 RLG00000000878 RLG00000006741
rosa_multiflora	Rmu_sc0000312.1_g000020 Rmu_sc0004165.1_g000047 Rmu_sc0004165.1_g000053 Rmu_sc0007085.1_g000001 Rmu_sc0007085.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375100
rosa_rugosa	Rorug07G0317500 Rorug07G0317600
rosa_samantha	Rh4DG329300 Rh7AG472200 Rh7AG472500 Rh7AG473200 Rh7BG442900 Rh7BG443200 Rh7CG489400 Rh7CG490100 Rh7DG457900 Rh7DG458400
rosa_wichuraiana	Rw4G028130 Rw7G039090 Rw7G039130 Rw7G039340 Rw7G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	838
AccI	GTMKAC	1 cut(s)	828
AccII	CGCG	1 cut(s)	710
AciI	CCGC	2 cut(s)	708, 838
AclWI	GGATC	4 cut(s)	186, 242, 507, 848
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	15
AcuI	CTGAAG	1 cut(s)	451
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	334, 473, 740
AfiI	CCNNNNNNNGG	1 cut(s)	771
AgsI	TTSAA	5 cut(s)	73, 323, 358, 631, 695
AjnI	CCWGG	1 cut(s)	831
AluBI	AGCT	5 cut(s)	58, 205, 442, 505, 521
AluI	AGCT	5 cut(s)	58, 205, 442, 505, 521
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	4 cut(s)	186, 242, 507, 848
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	2 cut(s)	55, 161
ApoI	RAATTY	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	3 cut(s)	224, 289, 920
AsuII	TTCGAA	1 cut(s)	677
AvaI	CYCGRG	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	313
BaeGI	GKGCMC	1 cut(s)	796
BalI	TGGCCA	1 cut(s)	275
BarI	GAAGNNNNNNTAC	4 cut(s)	325, 357, 840, 872
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	464
BbvI	GCAGC	2 cut(s)	67, 148
BccI	CCATC	4 cut(s)	72, 470, 769, 773
BceAI	ACGGC	1 cut(s)	137
BcgI	CGANNNNNNTGC	2 cut(s)	464, 498
BciT130I	CCWGG	1 cut(s)	833
BclI	TGATCA	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	4 cut(s)	317, 336, 510, 801
BglII	AGATCT	1 cut(s)	568
BisI	GCNGC	2 cut(s)	56, 162
BlsI	GCNGC	2 cut(s)	57, 163
BmcAI	AGTACT	1 cut(s)	740
Bme1390I	CCNGG	1 cut(s)	833
Bme18I	GGWCC	1 cut(s)	313
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	2 cut(s)	314, 450
BmrFI	CCNGG	1 cut(s)	833
BmsI	GCATC	1 cut(s)	253
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	854
Bpu14I	TTCGAA	1 cut(s)	677
BpuEI	CTTGAG	2 cut(s)	170, 368
BsaBI	GATNNNNATC	1 cut(s)	567
BsaHI	GRCGYC	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	1 cut(s)	771
Bse3DI	GCAATG	1 cut(s)	888
Bse8I	GATNNNNATC	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	833
BseGI	GGATG	3 cut(s)	83, 102, 780
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	1 cut(s)	771
BseMI	GCAATG	1 cut(s)	888
BseMII	CTCAG	1 cut(s)	537
BseSI	GKGCMC	1 cut(s)	796
BseXI	GCAGC	2 cut(s)	67, 148
Bsh1236I	CGCG	1 cut(s)	710
BshFI	GGCC	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	464
BsiHKCI	CYCGRG	1 cut(s)	398
BslI	CCNNNNNNNGG	1 cut(s)	771
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	275
BsoBI	CYCGRG	1 cut(s)	398
Bsp119I	TTCGAA	1 cut(s)	677
Bsp1286I	GDGCHC	2 cut(s)	464, 796
BspACI	CCGC	2 cut(s)	708, 838
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	1 cut(s)	538
BspFNI	CGCG	1 cut(s)	710
BspLI	GGNNCC	2 cut(s)	314, 450
BspPI	GGATC	4 cut(s)	186, 242, 507, 848
BspT104I	TTCGAA	1 cut(s)	677
BsrBI	CCGCTC	1 cut(s)	838
BsrDI	GCAATG	1 cut(s)	888
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	833
Bst4CI	ACNGT	1 cut(s)	869
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	677
BstC8I	GCNNGC	2 cut(s)	369, 507
BstDEI	CTNAG	2 cut(s)	522, 546
BstF5I	GGATG	3 cut(s)	83, 102, 780
BstFNI	CGCG	1 cut(s)	710
BstMAI	GTCTC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 272
BstNI	CCWGG	1 cut(s)	833
BstSCI	CCNGG	1 cut(s)	831
BstSLI	GKGCMC	1 cut(s)	796
BstUI	CGCG	1 cut(s)	710
BstV1I	GCAGC	2 cut(s)	67, 148
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	3 cut(s)	178, 512, 568
BstXI	CCANNNNNNTGG	1 cut(s)	425
BstYI	RGATCY	3 cut(s)	178, 512, 568
BsuRI	GGCC	1 cut(s)	275
BtsCI	GGATG	3 cut(s)	83, 102, 780
BtsIMutI	CAGTG	3 cut(s)	543, 558, 874
Cac8I	GCNNGC	2 cut(s)	369, 507
Cfr13I	GGNCC	1 cut(s)	313
Csp6I	GTAC	3 cut(s)	333, 472, 739
CviAII	CATG	3 cut(s)	377, 944, 950
CviQI	GTAC	3 cut(s)	333, 472, 739
DdeI	CTNAG	2 cut(s)	522, 546
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	451
Eco88I	CYCGRG	1 cut(s)	398
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	831
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	3 cut(s)	380, 947, 953
FatI	CATG	3 cut(s)	376, 943, 949
FbaI	TGATCA	1 cut(s)	99
FblI	GTMKAC	1 cut(s)	828
Fnu4HI	GCNGC	2 cut(s)	56, 162
FokI	GGATG	3 cut(s)	90, 109, 787
Fsp4HI	GCNGC	2 cut(s)	56, 162
FspBI	CTAG	4 cut(s)	317, 336, 510, 801
GluI	GCNGC	2 cut(s)	56, 162
GsuI	CTGGAG	1 cut(s)	854
HaeIII	GGCC	1 cut(s)	275
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	380, 947, 953
HincII	GTYRAC	2 cut(s)	496, 829
HindII	GTYRAC	2 cut(s)	496, 829
HinfI	GANTC	5 cut(s)	47, 241, 281, 579, 674
HphI	GGTGA	3 cut(s)	224, 289, 920
Hpy166II	GTNNAC	4 cut(s)	240, 297, 496, 829
Hpy188I	TCNGA	4 cut(s)	52, 437, 517, 578
Hpy188III	TCNNGA	9 cut(s)	38, 245, 347, 358, 398, 426, 583, 731, 878
Hpy8I	GTNNAC	4 cut(s)	240, 297, 496, 829
Hpy99I	CGWCG	1 cut(s)	762
HpyAV	CCTTC	6 cut(s)	86, 351, 475, 544, 742, 944
HpyCH4III	ACNGT	1 cut(s)	869
HpyCH4IV	ACGT	2 cut(s)	498, 757
HpyCH4V	TGCA	2 cut(s)	413, 614
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 272
HpyF3I	CTNAG	2 cut(s)	522, 546
HpySE526I	ACGT	2 cut(s)	498, 757
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	380, 947, 953
Ksp22I	TGATCA	1 cut(s)	99
LmnI	GCTCC	3 cut(s)	63, 594, 835
Lsp1109I	GCAGC	2 cut(s)	67, 148
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	4 cut(s)	317, 336, 510, 801
MaeII	ACGT	2 cut(s)	498, 757
MaeIII	GTNAC	3 cut(s)	212, 808, 908
MbiI	CCGCTC	1 cut(s)	838
MboII	GAAGA	9 cut(s)	26, 53, 56, 173, 416, 550, 578, 683, 860
MflI	RGATCY	3 cut(s)	178, 512, 568
MhlI	GDGCHC	2 cut(s)	464, 796
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	5 cut(s)	15, 108, 191, 290, 695
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	2 cut(s)	41, 235
MmeI	TCCRAC	1 cut(s)	275
MnlI	CCTC	7 cut(s)	42, 394, 403, 462, 484, 817, 885
Mox20I	TGGCCA	1 cut(s)	275
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	1 cut(s)	654
MslI	CAYNNNNRTG	1 cut(s)	948
Msp20I	TGGCCA	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	833
Mva1269I	GAATGC	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	833
MvnI	CGCG	1 cut(s)	710
MwoI	GCNNNNNNNGC	2 cut(s)	158, 272
NlaIII	CATG	3 cut(s)	380, 947, 953
NlaIV	GGNNCC	2 cut(s)	314, 450
NmuCI	GTSAC	3 cut(s)	212, 808, 908
NspV	TTCGAA	1 cut(s)	677
PaeR7I	CTCGAG	1 cut(s)	398
PctI	GAATGC	1 cut(s)	68
PfeI	GAWTC	3 cut(s)	281, 579, 674
PkrI	GCNGC	2 cut(s)	57, 163
PleI	GAGTC	2 cut(s)	41, 235
PpsI	GAGTC	2 cut(s)	41, 235
PpuMI	RGGWCCY	1 cut(s)	313
Psp5II	RGGWCCY	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	831
PspGI	CCWGG	1 cut(s)	831
PspN4I	GGNNCC	2 cut(s)	314, 450
PspPI	GGNCC	1 cut(s)	313
PspPPI	RGGWCCY	1 cut(s)	313
PsuI	RGATCY	3 cut(s)	178, 512, 568
RsaI	GTAC	3 cut(s)	334, 473, 740
RsaNI	GTAC	3 cut(s)	333, 472, 739
RseI	CAYNNNNRTG	1 cut(s)	948
SalI	GTCGAC	1 cut(s)	827
SaqAI	TTAA	1 cut(s)	654
SatI	GCNGC	2 cut(s)	56, 162
Sau96I	GGNCC	1 cut(s)	313
ScaI	AGTACT	1 cut(s)	740
SchI	GAGTC	2 cut(s)	41, 235
ScrFI	CCNGG	1 cut(s)	833
SduI	GDGCHC	2 cut(s)	464, 796
SfaNI	GCATC	1 cut(s)	253
Sfr274I	CTCGAG	1 cut(s)	398
SfuI	TTCGAA	1 cut(s)	677
SinI	GGWCC	1 cut(s)	313
SlaI	CTCGAG	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	948
SmlI	CTYRAG	3 cut(s)	185, 347, 398
SmoI	CTYRAG	3 cut(s)	185, 347, 398
Sse9I	AATT	5 cut(s)	15, 108, 191, 290, 695
SsiI	CCGC	2 cut(s)	708, 838
SspI	AATATT	1 cut(s)	28
SspMI	CTAG	4 cut(s)	317, 336, 510, 801
StyD4I	CCNGG	1 cut(s)	831
TaaI	ACNGT	1 cut(s)	869
TaiI	ACGT	2 cut(s)	501, 760
TaqI	TCGA	5 cut(s)	399, 677, 760, 828, 883
TasI	AATT	5 cut(s)	15, 108, 191, 290, 695
TatI	WGTACW	2 cut(s)	332, 738
TfiI	GAWTC	3 cut(s)	281, 579, 674
Tru1I	TTAA	1 cut(s)	654
Tru9I	TTAA	1 cut(s)	654
TscAI	CASTG	3 cut(s)	550, 565, 874
TseFI	GTSAC	3 cut(s)	212, 808, 908
TseI	GCWGC	2 cut(s)	55, 161
Tsp45I	GTSAC	3 cut(s)	212, 808, 908
TspDTI	ATGAA	4 cut(s)	105, 133, 294, 579
TspGWI	ACGGA	2 cut(s)	213, 269
TspRI	CASTG	3 cut(s)	550, 565, 874
VpaK11BI	GGWCC	1 cut(s)	313
XapI	RAATTY	1 cut(s)	15
XcmI	CCANNNNNNNNNTGG	1 cut(s)	772
XhoI	CTCGAG	1 cut(s)	398
XmiI	GTMKAC	1 cut(s)	828
XspI	CTAG	4 cut(s)	317, 336, 510, 801
ZrmI	AGTACT	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.