Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001905

Physical Location & Seq

Genomic Coordinates Reverse (-)

3209497 .. 3211483

Gene Structure 1987 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCTTCTCTCAAAGTTCCCGCCACTGTTCCTCTTCCCGAAGAAGACGCTGAGCAACTCTACAAAGCCTTTAAAGGATGGGGAACCAATGAGAGGATGATCATATCAATCTTGGCTCACAGAAATGCAACGCAACGTAGTTTCATTCGTGCCGTTTATGCTGCTAACTACAATAAGGATCTTCTCAAGGAATTAGACAGAGAGCTTTCCGGTGACTTTGAGCGAGCTGTGATGTTGTGGACTTTTGAACCAGCGGAGAGAGATGCTTATTTGGCAAAAGAATCTACCAAAATGTTCACCAAAAACAATTGGGTTCTTGTCGAAATCGCTTGTACTAGATCTGCTCTTGAACTCTTTAATGCCAAGCAAGCATACCAAGCCCGCTACAAGACCTCCCTCGAGGAAGACGTCGCATACCACACATCTGGAGACATTCGAAAGCTCTTGGTACCTCTTGTGAGCACTTTTAGGTACGATGGAGATGAAGTGAACATGACGTTAGCTAGGTCCGAGGCTAAGATACTTCACGAGAAGATCAAGGAAAAGGCTTATGCTGATGATGATCTCATAAGAATCTTGACAACCAGGAGCAAAGCACAAATCAGCGCAACTCTCAATCACTACAAAAACAATTTCGGAACTTCCATGAGCAAATACCTAAAGGAGGATTCGGAAAACGAATACATTCAATTGCTCAAAGCCGTGATCAAATGCTTGACATATCCAGAGAAGTATTTTGAGAAAGTTCTACGTCAAGCCATCAACAAATTGGGAACAGATGAGTGGGGACTAACGAGAGTGGTCACTACACGAGCAGAGTTTGACATGGAACGGATCAAAGAGGAATATATACGTAGAAACAGTGTTCCTCTTGATCGAGCCATTGCTAAAGACACTCATGGTGACTATGAGGATATACTTCTCGCTCTTCTCGGACATGACCATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006950 GO:0006970 GO:0008150 GO:0008643 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009579 GO:0009628 GO:0009639 GO:0009651 GO:0010035 GO:0015774 GO:0016020 GO:0033036 GO:0033037 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

316

Amino Acids

36.5

Weight (kDa)

6.43

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	16 - 79	6.5e-23	Annexin
Annexin	PF00191	87 - 152	2.7e-16	Annexin
Annexin	PF00191	171 - 234	3e-12	Annexin
Annexin	PF00191	245 - 310	2.3e-17	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68090 AT1G68090 AT5G10220 AT5G10230
fragaria_vesca	FvH4_5g36750 FvH4_5g36780
malus_domestica	MD08G1187000.v1.1 MD15G1372900.v1.1 MD16G1013400.v1.1
prunus_persica	Prupe.1G337800_v2.0.a1 Prupe.1G337800_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1
pyrus_communis	pycom08g16080 pycom15g33390
rosa_chinensis	RchiOBHm_Chr4g0433651 RchiOBHm_Chr7g0242801 RchiOBHm_Chr7g0242891
rosa_laevigata	RLG00000000871 RLG00000000878 RLG00000006741
rosa_multiflora	Rmu_sc0000312.1_g000020 Rmu_sc0004165.1_g000047 Rmu_sc0004165.1_g000053 Rmu_sc0007085.1_g000001 Rmu_sc0007085.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375100
rosa_rugosa	Rorug07G0317500 Rorug07G0317600
rosa_samantha	Rh4DG329300 Rh7AG472200 Rh7AG472500 Rh7AG473200 Rh7BG442900 Rh7BG443200 Rh7CG489400 Rh7CG490100 Rh7DG457900 Rh7DG458400
rosa_wichuraiana	Rw4G028130 Rw7G039090 Rw7G039130 Rw7G039340 Rw7G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	411
AbsI	CCTCGAGG	1 cut(s)	398
Acc65I	GGTACC	1 cut(s)	448
AccB1I	GGYRCC	1 cut(s)	448
AciI	CCGC	3 cut(s)	21, 254, 382
AclWI	GGATC	2 cut(s)	186, 842
AcyI	GRCGYC	1 cut(s)	408
AfaI	GTAC	3 cut(s)	334, 450, 473
AfiI	CCNNNNNNNGG	2 cut(s)	93, 664
AgsI	TTSAA	3 cut(s)	248, 350, 689
AjnI	CCWGG	1 cut(s)	584
AluBI	AGCT	4 cut(s)	205, 227, 442, 503
AluI	AGCT	4 cut(s)	205, 227, 442, 503
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	2 cut(s)	186, 842
Ama87I	CYCGRG	1 cut(s)	398
ApeKI	GCWGC	1 cut(s)	161
Asp700I	GAANNNNTTC	1 cut(s)	684
Asp718I	GGTACC	1 cut(s)	448
AspLEI	GCGC	1 cut(s)	608
AspS9I	GGNCC	1 cut(s)	507
AsuHPI	GGTGA	3 cut(s)	224, 289, 914
AsuII	TTCGAA	1 cut(s)	436
AvaI	CYCGRG	1 cut(s)	398
AvaII	GGWCC	1 cut(s)	507
BanI	GGYRCC	1 cut(s)	448
BauI	CACGAG	2 cut(s)	527, 810
BbsI	GAAGAC	2 cut(s)	51, 411
Bbv12I	GWGCWC	1 cut(s)	464
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	3 cut(s)	72, 470, 767
BceAI	ACGGC	2 cut(s)	137, 686
BciT130I	CCWGG	1 cut(s)	586
BclI	TGATCA	2 cut(s)	99, 705
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	2 cut(s)	336, 504
BglII	AGATCT	1 cut(s)	338
BisI	GCNGC	1 cut(s)	162
BlpI	GCTNAGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	163
Bme1390I	CCNGG	1 cut(s)	586
Bme18I	GGWCC	1 cut(s)	507
BmeT110I	CYCGRG	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	507
BmiI	GGNNCC	2 cut(s)	85, 450
BmrFI	CCNGG	1 cut(s)	586
BmsI	GCATC	1 cut(s)	253
BpiI	GAAGAC	2 cut(s)	51, 411
BpmI	CTGGAG	1 cut(s)	447
Bpu1102I	GCTNAGC	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	436
BpuEI	CTTGAG	1 cut(s)	170
BsaAI	YACGTR	1 cut(s)	854
BsaBI	GATNNNNATC	1 cut(s)	561
BsaHI	GRCGYC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	510
BsaWI	WCCGGW	1 cut(s)	209
BsaXI	ACNNNNNCTCC	4 cut(s)	377, 407, 471, 501
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 664
Bse3DI	GCAATG	1 cut(s)	882
Bse8I	GATNNNNATC	1 cut(s)	561
BseBI	CCWGG	1 cut(s)	586
BseDI	CCNNGG	1 cut(s)	510
BseGI	GGATG	2 cut(s)	83, 102
BseJI	GATNNNNATC	1 cut(s)	561
BseLI	CCNNNNNNNGG	2 cut(s)	93, 664
BseMI	GCAATG	1 cut(s)	882
BseMII	CTCAG	1 cut(s)	42
BseXI	GCAGC	1 cut(s)	148
BshNI	GGYRCC	1 cut(s)	448
BsiHKAI	GWGCWC	1 cut(s)	464
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	801
BslI	CCNNNNNNNGG	2 cut(s)	93, 664
BsmAI	GTCTC	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	801
BsoBI	CYCGRG	1 cut(s)	398
Bsp119I	TTCGAA	1 cut(s)	436
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp143I	GATC	8 cut(s)	99, 178, 338, 534, 562, 705, 834, 874
Bsp1720I	GCTNAGC	1 cut(s)	51
BspACI	CCGC	3 cut(s)	21, 254, 382
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	2 cut(s)	85, 450
BspPI	GGATC	2 cut(s)	186, 842
BspQI	GCTCTTC	1 cut(s)	933
BspT104I	TTCGAA	1 cut(s)	436
BspT107I	GGYRCC	1 cut(s)	448
BsrDI	GCAATG	1 cut(s)	882
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	8 cut(s)	99, 178, 338, 534, 562, 705, 834, 874
BssNI	GRCGYC	1 cut(s)	408
BssSI	CACGAG	2 cut(s)	527, 810
Bst2BI	CACGAG	2 cut(s)	527, 810
Bst2UI	CCWGG	1 cut(s)	586
Bst4CI	ACNGT	2 cut(s)	28, 863
Bst6I	CTCTTC	2 cut(s)	39, 933
BstACI	GRCGYC	1 cut(s)	408
BstBAI	YACGTR	1 cut(s)	854
BstBI	TTCGAA	1 cut(s)	436
BstC8I	GCNNGC	3 cut(s)	225, 369, 382
BstDEI	CTNAG	2 cut(s)	51, 516
BstENI	CCTNNNNNAGG	1 cut(s)	662
BstF5I	GGATG	2 cut(s)	83, 102
BstHHI	GCGC	1 cut(s)	608
BstKTI	GATC	8 cut(s)	102, 181, 341, 537, 565, 708, 837, 877
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	8 cut(s)	99, 178, 338, 534, 562, 705, 834, 874
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 272, 368, 377
BstNI	CCWGG	1 cut(s)	586
BstSCI	CCNGG	1 cut(s)	584
BstSNI	TACGTA	1 cut(s)	854
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	2 cut(s)	51, 411
BstX2I	RGATCY	2 cut(s)	178, 338
BstXI	CCANNNNNNTGG	1 cut(s)	425
BstYI	RGATCY	2 cut(s)	178, 338
BtsCI	GGATG	2 cut(s)	83, 102
BtsIMutI	CAGTG	2 cut(s)	24, 868
Cac8I	GCNNGC	3 cut(s)	225, 369, 382
CfoI	GCGC	1 cut(s)	608
Cfr13I	GGNCC	1 cut(s)	507
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	3 cut(s)	333, 449, 472
CviAII	CATG	6 cut(s)	493, 646, 826, 899, 938, 944
CviQI	GTAC	3 cut(s)	333, 449, 472
DdeI	CTNAG	2 cut(s)	51, 516
DpnI	GATC	8 cut(s)	101, 180, 340, 536, 564, 707, 836, 876
DpnII	GATC	8 cut(s)	99, 178, 338, 534, 562, 705, 834, 874
DraI	TTTAAA	1 cut(s)	73
Eam1104I	CTCTTC	2 cut(s)	39, 933
EarI	CTCTTC	2 cut(s)	39, 933
Eco105I	TACGTA	1 cut(s)	854
Eco47I	GGWCC	1 cut(s)	507
Eco88I	CYCGRG	1 cut(s)	398
EcoNI	CCTNNNNNAGG	1 cut(s)	662
EcoRII	CCWGG	1 cut(s)	584
FaeI	CATG	6 cut(s)	496, 649, 829, 902, 941, 947
FaqI	GGGAC	1 cut(s)	801
FatI	CATG	6 cut(s)	492, 645, 825, 898, 937, 943
FauI	CCCGC	2 cut(s)	28, 389
FbaI	TGATCA	2 cut(s)	99, 705
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	2 cut(s)	90, 109
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	2 cut(s)	336, 504
GlaI	GCGC	1 cut(s)	607
GluI	GCNGC	1 cut(s)	162
GsuI	CTGGAG	1 cut(s)	447
HapII	CCGG	1 cut(s)	210
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	608
Hin1I	GRCGYC	1 cut(s)	408
Hin1II	CATG	6 cut(s)	496, 649, 829, 902, 941, 947
Hin6I	GCGC	1 cut(s)	606
HinP1I	GCGC	1 cut(s)	606
HinfI	GANTC	3 cut(s)	281, 573, 668
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	3 cut(s)	224, 289, 914
Hpy166II	GTNNAC	3 cut(s)	240, 297, 490
Hpy188I	TCNGA	4 cut(s)	511, 638, 673, 935
Hpy188III	TCNNGA	7 cut(s)	38, 347, 426, 527, 577, 725, 872
Hpy8I	GTNNAC	3 cut(s)	240, 297, 490
Hpy99I	CGWCG	1 cut(s)	413
HpyCH4III	ACNGT	2 cut(s)	28, 863
HpyCH4IV	ACGT	5 cut(s)	136, 408, 497, 751, 853
HpyCH4V	TGCA	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 272, 368, 377
HpyF3I	CTNAG	2 cut(s)	51, 516
HpySE526I	ACGT	5 cut(s)	136, 408, 497, 751, 853
Hsp92I	GRCGYC	1 cut(s)	408
Hsp92II	CATG	6 cut(s)	496, 649, 829, 902, 941, 947
HspAI	GCGC	1 cut(s)	606
KpnI	GGTACC	1 cut(s)	452
Ksp22I	TGATCA	2 cut(s)	99, 705
Kzo9I	GATC	8 cut(s)	99, 178, 338, 534, 562, 705, 834, 874
LguI	GCTCTTC	1 cut(s)	933
LmnI	GCTCC	1 cut(s)	588
LpnPI	CCDG	6 cut(s)	223, 264, 411, 571, 598, 738
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	2 cut(s)	336, 504
MaeII	ACGT	5 cut(s)	136, 408, 497, 751, 853
MaeIII	GTNAC	3 cut(s)	212, 802, 902
MalI	GATC	8 cut(s)	101, 180, 340, 536, 564, 707, 836, 876
MboI	GATC	8 cut(s)	99, 178, 338, 534, 562, 705, 834, 874
MboII	GAAGA	7 cut(s)	26, 53, 56, 173, 416, 544, 920
MfeI	CAATTG	2 cut(s)	307, 689
MflI	RGATCY	2 cut(s)	178, 338
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	5 cut(s)	191, 307, 631, 689, 767
MroXI	GAANNNNTTC	1 cut(s)	684
MseI	TTAA	2 cut(s)	72, 357
MslI	CAYNNNNRTG	2 cut(s)	123, 942
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	586
MunI	CAATTG	2 cut(s)	307, 689
MvaI	CCWGG	1 cut(s)	586
MwoI	GCNNNNNNNGC	4 cut(s)	158, 272, 368, 377
NdeII	GATC	8 cut(s)	99, 178, 338, 534, 562, 705, 834, 874
NlaIII	CATG	6 cut(s)	496, 649, 829, 902, 941, 947
NlaIV	GGNNCC	2 cut(s)	85, 450
NmuCI	GTSAC	3 cut(s)	212, 802, 902
NspV	TTCGAA	1 cut(s)	436
PaeR7I	CTCGAG	1 cut(s)	398
PciSI	GCTCTTC	1 cut(s)	933
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	684
PfeI	GAWTC	3 cut(s)	281, 573, 668
PkrI	GCNGC	1 cut(s)	163
Ppu21I	YACGTR	1 cut(s)	854
Psp6I	CCWGG	1 cut(s)	584
PspGI	CCWGG	1 cut(s)	584
PspN4I	GGNNCC	2 cut(s)	85, 450
PspPI	GGNCC	1 cut(s)	507
PspXI	VCTCGAGB	1 cut(s)	398
PsuI	RGATCY	2 cut(s)	178, 338
RsaI	GTAC	3 cut(s)	334, 450, 473
RsaNI	GTAC	3 cut(s)	333, 449, 472
RseI	CAYNNNNRTG	2 cut(s)	123, 942
SapI	GCTCTTC	1 cut(s)	933
SaqAI	TTAA	2 cut(s)	72, 357
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	8 cut(s)	99, 178, 338, 534, 562, 705, 834, 874
Sau96I	GGNCC	1 cut(s)	507
ScrFI	CCNGG	1 cut(s)	586
SduI	GDGCHC	1 cut(s)	464
SfaNI	GCATC	1 cut(s)	253
Sfr274I	CTCGAG	1 cut(s)	398
SfuI	TTCGAA	1 cut(s)	436
SinI	GGWCC	1 cut(s)	507
SlaI	CTCGAG	1 cut(s)	398
SmiMI	CAYNNNNRTG	2 cut(s)	123, 942
SmlI	CTYRAG	2 cut(s)	185, 398
SmoI	CTYRAG	2 cut(s)	185, 398
SnaBI	TACGTA	1 cut(s)	854
Sse9I	AATT	5 cut(s)	191, 307, 631, 689, 767
SsiI	CCGC	3 cut(s)	21, 254, 382
SspMI	CTAG	2 cut(s)	336, 504
StyD4I	CCNGG	1 cut(s)	584
TaaI	ACNGT	2 cut(s)	28, 863
TaiI	ACGT	5 cut(s)	139, 411, 500, 754, 856
TaqI	TCGA	4 cut(s)	321, 399, 436, 877
TasI	AATT	5 cut(s)	191, 307, 631, 689, 767
TatI	WGTACW	1 cut(s)	332
TfiI	GAWTC	3 cut(s)	281, 573, 668
Tru1I	TTAA	2 cut(s)	72, 357
Tru9I	TTAA	2 cut(s)	72, 357
TscAI	CASTG	2 cut(s)	31, 868
TseFI	GTSAC	3 cut(s)	212, 802, 902
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	3 cut(s)	212, 802, 902
TspDTI	ATGAA	2 cut(s)	133, 498
TspGWI	ACGGA	1 cut(s)	847
TspRI	CASTG	2 cut(s)	31, 868
VpaK11BI	GGWCC	1 cut(s)	507
XagI	CCTNNNNNAGG	1 cut(s)	662
XcmI	CCANNNNNNNNNTGG	1 cut(s)	766
XhoI	CTCGAG	1 cut(s)	398
XmnI	GAANNNNTTC	1 cut(s)	684
XspI	CTAG	2 cut(s)	336, 504
ZraI	GACGTC	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.