Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001905

Physical Location & Seq

Genomic Coordinates Reverse (-)

57697284 .. 57700053

Gene Structure 2770 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40212

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCATCTGTGATCATCCCACCGGTGCCACCTTCGCTGCGTGATGATGCTGCTCATCTCTACGAGGCCTTTAAAGGATTTGGATGTGATACTGCAGCAGTAGTCAATATCCTTGCTCACAGGAATATTGCAACACAGCGTGATGCCATCCAAAAAAAATACAACACCATGCACTCCGAAGATCTCAACAAGCGCTTGTCCTCCGAACTTAGTGTACATGTCAAGAAAGCAATATTGTTGTGGATGCCTGATCCAGCAACGCGTGATGCAAACATAGTGAGGCACGCATTGGATCGTGGTGTTGATCTCAAAGCGGCCAGTGAAGTCATATGCTCTCGTACTCCGTCCCAGCTGCGACAATTCAAGCAAATCTACTTTTCAAATTTCAGTTTGCTGCTTGCATTTGTTAGCGAATCCCAGTACGAAGGCCCAGAATTCGATCAATTAGAAGTGGAGAAAGATTCAGAAGCTCAGTATAAGGCCGGGGGGAAGAGATTTGCGGGAGCCGATGATAAGACTTTCATAGATATATTTAACGGAAGAAGCAGGGCGCATTTGGCTGCTGTTAGCTCTACTTACCAAAATAAATATCGCCATACATTGGAAAAGGAAACATCTGGAAATTTTGGGCATGCGCTTATGACTATCTTACAATGTGCTCAACATCGTGCCATTTTTTTTTTGCAAAGGTTTTATGTAAGGCGATTAAGGGTTTGGGTACATCCGACACTGACAAGGGTTGTGGTGACGAGGGCGGAGAGTGACATGCAGTATATAAAGGCAGAATACCACCAGAGAAATATGGAAAAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0006950 GO:0006970 GO:0007275 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009555 GO:0009628 GO:0009639 GO:0009651 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0044706 GO:0044877 GO:0046872 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051015 GO:0051704 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

271

Amino Acids

31.01

Weight (kDa)

9.26

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	16 - 80	4.6e-13	Annexin
Annexin	PF00191	156 - 216	1.7e-08	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68090 AT1G68090 AT5G10220 AT5G10230
fragaria_vesca	FvH4_5g36750 FvH4_5g36780
malus_domestica	MD08G1187000.v1.1 MD15G1372900.v1.1 MD16G1013400.v1.1
prunus_persica	Prupe.1G337800_v2.0.a1 Prupe.1G337800_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1
pyrus_communis	pycom08g16080 pycom15g33390
rosa_chinensis	RchiOBHm_Chr4g0433651 RchiOBHm_Chr7g0242801 RchiOBHm_Chr7g0242891
rosa_laevigata	RLG00000000871 RLG00000000878 RLG00000006741
rosa_multiflora	Rmu_sc0000312.1_g000020 Rmu_sc0004165.1_g000047 Rmu_sc0004165.1_g000053 Rmu_sc0007085.1_g000001 Rmu_sc0007085.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375100
rosa_rugosa	Rorug07G0317500 Rorug07G0317600
rosa_samantha	Rh4DG329300 Rh7AG472200 Rh7AG472500 Rh7AG473200 Rh7BG442900 Rh7BG443200 Rh7CG489400 Rh7CG490100 Rh7DG457900 Rh7DG458400
rosa_wichuraiana	Rw4G028130 Rw7G039090 Rw7G039130 Rw7G039340 Rw7G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AccB7I	CCANNNNNTGG	1 cut(s)	601
AccII	CGCG	1 cut(s)	262
AciI	CCGC	3 cut(s)	314, 500, 755
AclWI	GGATC	2 cut(s)	245, 300
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	3 cut(s)	382, 434, 622
AdeI	CACNNNGTG	1 cut(s)	140
AfaI	GTAC	4 cut(s)	216, 340, 422, 720
AfeI	AGCGCT	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	601
AflIII	ACRYGT	2 cut(s)	217, 260
AgeI	ACCGGT	1 cut(s)	22
AgsI	TTSAA	2 cut(s)	364, 381
AluBI	AGCT	3 cut(s)	352, 470, 570
AluI	AGCT	3 cut(s)	352, 470, 570
Alw21I	GWGCWC	1 cut(s)	661
AlwI	GGATC	2 cut(s)	245, 300
Aor51HI	AGCGCT	1 cut(s)	194
AoxI	GGCC	4 cut(s)	66, 315, 427, 480
ApeKI	GCWGC	6 cut(s)	37, 50, 95, 352, 394, 560
ApoI	RAATTY	3 cut(s)	382, 434, 622
AsiGI	ACCGGT	1 cut(s)	22
AspLEI	GCGC	3 cut(s)	195, 553, 637
AspS9I	GGNCC	1 cut(s)	428
AsuC2I	CCSGG	1 cut(s)	484
AsuHPI	GGTGA	1 cut(s)	757
BanI	GGYRCC	1 cut(s)	25
Bbv12I	GWGCWC	1 cut(s)	661
BbvI	GCAGC	6 cut(s)	24, 37, 107, 339, 381, 547
BccI	CCATC	1 cut(s)	155
BclI	TGATCA	1 cut(s)	12
BcnI	CCSGG	1 cut(s)	484
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	1 cut(s)	196
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	7 cut(s)	38, 51, 96, 315, 353, 395, 561
BlsI	GCNGC	7 cut(s)	39, 52, 97, 316, 354, 396, 562
Bme1390I	CCNGG	1 cut(s)	484
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	2 cut(s)	27, 505
BmrFI	CCNGG	1 cut(s)	484
BmrI	ACTGGG	1 cut(s)	412
BmsI	GCATC	5 cut(s)	14, 37, 133, 234, 256
BmuI	ACTGGG	1 cut(s)	412
BpuMI	CCSGG	1 cut(s)	484
BsaJI	CCNNGG	1 cut(s)	483
BsaWI	WCCGGW	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	1 cut(s)	601
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	2 cut(s)	318, 418
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	5 cut(s)	15, 89, 147, 249, 721
BseLI	CCNNNNNNNGG	1 cut(s)	601
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	2 cut(s)	318, 418
BseXI	GCAGC	6 cut(s)	24, 37, 107, 339, 381, 547
BseYI	CCCAGC	1 cut(s)	348
Bsh1236I	CGCG	1 cut(s)	262
BshFI	GGCC	4 cut(s)	68, 317, 429, 482
BshNI	GGYRCC	1 cut(s)	25
BshTI	ACCGGT	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	661
BsiSI	CCGG	2 cut(s)	23, 483
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	1 cut(s)	601
BsmFI	GGGAC	1 cut(s)	331
BsnI	GGCC	4 cut(s)	68, 317, 429, 482
Bsp1286I	GDGCHC	1 cut(s)	661
Bsp1407I	TGTACA	1 cut(s)	214
Bsp143I	GATC	6 cut(s)	12, 181, 250, 292, 304, 439
BspACI	CCGC	3 cut(s)	314, 500, 755
BspANI	GGCC	4 cut(s)	68, 317, 429, 482
BspCNI	CTCAG	1 cut(s)	484
BspFNI	CGCG	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	27, 505
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	2 cut(s)	245, 300
BspT107I	GGYRCC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	22
BsrGI	TGTACA	1 cut(s)	214
BsrI	ACTGG	2 cut(s)	318, 418
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	6 cut(s)	12, 181, 250, 292, 304, 439
Bst6I	CTCTTC	1 cut(s)	485
BstAUI	TGTACA	1 cut(s)	214
BstC8I	GCNNGC	3 cut(s)	285, 399, 633
BstDEI	CTNAG	2 cut(s)	209, 471
BstF5I	GGATG	5 cut(s)	15, 89, 147, 249, 721
BstFNI	CGCG	1 cut(s)	262
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	3 cut(s)	195, 553, 637
BstKTI	GATC	6 cut(s)	15, 184, 253, 295, 307, 442
BstMBI	GATC	6 cut(s)	12, 181, 250, 292, 304, 439
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 557
BstNSI	RCATGY	3 cut(s)	221, 635, 769
BstSCI	CCNGG	1 cut(s)	482
BstSFI	CTRYAG	1 cut(s)	93
BstUI	CGCG	1 cut(s)	262
BstV1I	GCAGC	6 cut(s)	24, 37, 107, 339, 381, 547
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	4 cut(s)	68, 317, 429, 482
BtsCI	GGATG	5 cut(s)	15, 89, 147, 249, 721
BtsIMutI	CAGTG	2 cut(s)	325, 728
Cac8I	GCNNGC	3 cut(s)	285, 399, 633
CfoI	GCGC	3 cut(s)	195, 553, 637
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	1 cut(s)	428
Csp6I	GTAC	4 cut(s)	215, 339, 421, 719
CspAI	ACCGGT	1 cut(s)	22
CspCI	CAANNNNNGTGG	2 cut(s)	723, 758
CviAII	CATG	4 cut(s)	169, 218, 632, 766
CviJI	RGCY	9 cut(s)	68, 317, 352, 429, 470, 482, 506, 560, 570
CviKI_1	RGCY	9 cut(s)	68, 317, 352, 429, 470, 482, 506, 560, 570
CviQI	GTAC	4 cut(s)	215, 339, 421, 719
DdeI	CTNAG	2 cut(s)	209, 471
DpnI	GATC	6 cut(s)	14, 183, 252, 294, 306, 441
DpnII	GATC	6 cut(s)	12, 181, 250, 292, 304, 439
DraI	TTTAAA	1 cut(s)	73
DraIII	CACNNNGTG	1 cut(s)	140
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	485
EarI	CTCTTC	1 cut(s)	485
EciI	GGCGGA	1 cut(s)	770
Eco147I	AGGCCT	1 cut(s)	68
Eco47III	AGCGCT	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	434
FaeI	CATG	4 cut(s)	172, 221, 635, 769
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	4 cut(s)	168, 217, 631, 765
FauI	CCCGC	1 cut(s)	493
FauNDI	CATATG	1 cut(s)	329
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	7 cut(s)	38, 51, 96, 315, 353, 395, 561
FokI	GGATG	5 cut(s)	2, 96, 134, 256, 708
Fsp4HI	GCNGC	7 cut(s)	38, 51, 96, 315, 353, 395, 561
GlaI	GCGC	3 cut(s)	194, 552, 636
GluI	GCNGC	7 cut(s)	38, 51, 96, 315, 353, 395, 561
GsaI	CCCAGC	1 cut(s)	352
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	4 cut(s)	68, 317, 429, 482
HapII	CCGG	2 cut(s)	23, 483
HhaI	GCGC	3 cut(s)	195, 553, 637
Hin1II	CATG	4 cut(s)	172, 221, 635, 769
Hin6I	GCGC	3 cut(s)	193, 551, 635
HinP1I	GCGC	3 cut(s)	193, 551, 635
HinfI	GANTC	2 cut(s)	413, 461
HpaII	CCGG	2 cut(s)	23, 483
HphI	GGTGA	1 cut(s)	757
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	4 cut(s)	178, 205, 466, 726
Hpy188III	TCNNGA	2 cut(s)	223, 618
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	2 cut(s)	42, 419
HpyCH4V	TGCA	7 cut(s)	95, 131, 172, 269, 401, 685, 769
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 557
HpyF3I	CTNAG	2 cut(s)	209, 471
Hsp92II	CATG	4 cut(s)	172, 221, 635, 769
HspAI	GCGC	3 cut(s)	193, 551, 635
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	6 cut(s)	12, 181, 250, 292, 304, 439
LmnI	GCTCC	1 cut(s)	503
Lsp1109I	GCAGC	6 cut(s)	24, 37, 107, 339, 381, 547
LweI	GCATC	5 cut(s)	14, 37, 133, 234, 256
MaeIII	GTNAC	2 cut(s)	745, 761
MalI	GATC	6 cut(s)	14, 183, 252, 294, 306, 441
MboI	GATC	6 cut(s)	12, 181, 250, 292, 304, 439
MboII	GAAGA	3 cut(s)	191, 502, 552
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	661
MluCI	AATT	5 cut(s)	359, 382, 434, 443, 622
MluI	ACGCGT	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	749
MnlI	CCTC	4 cut(s)	58, 211, 273, 744
MseI	TTAA	3 cut(s)	72, 534, 707
MspA1I	CMGCKG	1 cut(s)	352
MspI	CCGG	2 cut(s)	23, 483
MspR9I	CCNGG	1 cut(s)	484
MvnI	CGCG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	34, 557
NciI	CCSGG	1 cut(s)	484
NdeI	CATATG	1 cut(s)	329
NdeII	GATC	6 cut(s)	12, 181, 250, 292, 304, 439
NlaIII	CATG	4 cut(s)	172, 221, 635, 769
NlaIV	GGNNCC	2 cut(s)	27, 505
NmuCI	GTSAC	2 cut(s)	745, 761
NspI	RCATGY	3 cut(s)	221, 635, 769
PaeI	GCATGC	1 cut(s)	635
PceI	AGGCCT	1 cut(s)	68
PciI	ACATGT	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	413, 461
PflMI	CCANNNNNTGG	1 cut(s)	601
PinAI	ACCGGT	1 cut(s)	22
PkrI	GCNGC	7 cut(s)	39, 52, 97, 316, 354, 396, 562
PscI	ACATGT	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	348
PspN4I	GGNNCC	2 cut(s)	27, 505
PspPI	GGNCC	1 cut(s)	428
PsrI	GAACNNNNNNTAC	2 cut(s)	198, 230
PstI	CTGCAG	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	352
RsaI	GTAC	4 cut(s)	216, 340, 422, 720
RsaNI	GTAC	4 cut(s)	215, 339, 421, 719
SaqAI	TTAA	3 cut(s)	72, 534, 707
SatI	GCNGC	7 cut(s)	38, 51, 96, 315, 353, 395, 561
Sau3AI	GATC	6 cut(s)	12, 181, 250, 292, 304, 439
Sau96I	GGNCC	1 cut(s)	428
ScrFI	CCNGG	1 cut(s)	484
SduI	GDGCHC	1 cut(s)	661
SetI	ASST	5 cut(s)	34, 354, 472, 572, 692
SfaNI	GCATC	5 cut(s)	14, 37, 133, 234, 256
SfcI	CTRYAG	1 cut(s)	93
SgrAI	CRCCGGYG	1 cut(s)	22
SphI	GCATGC	1 cut(s)	635
Sse9I	AATT	5 cut(s)	359, 382, 434, 443, 622
SseBI	AGGCCT	1 cut(s)	68
SsiI	CCGC	3 cut(s)	314, 500, 755
SspI	AATATT	2 cut(s)	127, 234
StuI	AGGCCT	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	482
TaqI	TCGA	1 cut(s)	438
TasI	AATT	5 cut(s)	359, 382, 434, 443, 622
TatI	WGTACW	1 cut(s)	214
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	2 cut(s)	413, 461
Tru1I	TTAA	3 cut(s)	72, 534, 707
Tru9I	TTAA	3 cut(s)	72, 534, 707
TscAI	CASTG	2 cut(s)	325, 735
TseFI	GTSAC	2 cut(s)	745, 761
TseI	GCWGC	6 cut(s)	37, 50, 95, 352, 394, 560
Tsp45I	GTSAC	2 cut(s)	745, 761
TspDTI	ATGAA	1 cut(s)	511
TspGWI	ACGGA	2 cut(s)	333, 552
TspRI	CASTG	2 cut(s)	325, 735
Van91I	CCANNNNNTGG	1 cut(s)	601
XapI	RAATTY	3 cut(s)	382, 434, 622
XceI	RCATGY	3 cut(s)	221, 635, 769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.