Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001905

Physical Location & Seq

Genomic Coordinates Forward (+)

7247237 .. 7248320

Gene Structure 1084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000871

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCGACTTTAACCACACCCCAACCCCCGACCTCACCGCGCACCGACGCCATCGACCTCCGCAAAGCCTTCAAGGGCTTCGGCTGCGACACCGCCGCCGTCATCAACATCCTCGCCCACCGCGACGCAGCCCACCGCGCCCAAATCGCGCGCGAGTACAGTACCATGTACTCCGAGGACTTCACCAAGCGCCTCTCCTCCGAGCTCAGCGGAAATACCAAGAAAGCCCTCCTCCTCTGGATCCCCGACCCCGCCACCCGCGACGCCAACATCGTCCGTCACGCCCTCACCGGCTCCGACCACCGCGCCGCCACCGAGGTCATCTGCTCCCGAACCCCCTCCCAGATCGCCCTATTCAAGCAAGTCTACTCCTCGATTTTCAATACCCATCTAGAACGCGACATCGGACTGCACACATCCGGCGACCTCAAGAATCTCCTGCTGGGTTTCGTCACCACGCAGAGGTACGAGGGCTTGGAATTCGACAGGGTAGCGGCGGAGAAAGACGCGAAATCCCTGTTCATGGCCGGAGAGAAAAGACTAGGGACTGATGAGAAGCAATTTATCGAAGTTTTTAGTAAAAGAAGCCGGGCTCATCTGAATGCGGTGAGCTCGGCTTATGAGAGCATGTATGGGAATTCTCTGAGAAAAGCGGTGAAGAAGGAGACTTCCGGGAACTTCGAGCATGGGCTGGTGACGATTCTGGAGTGTGCTGATCATCCGGGTAGGTACTTTGCTAGGATACTGCATAAAGCGATGAAGGGTTTGGGGACGGATGATAGTACATTGTTGAGAGTGGTGGTGACGAGGGCGGAGATTGATATGATGTATGTGAAGATTGAGTACCAGAAGAAGTATGGTAAGAGTTTGAACGAGGCTGTAAAGTCTGAGACTTCTGGGAATTTCAGGGCTTTTCTTCTGGCTCTGATAGGTTTGTCTCCAGAGATTGTTCATCCGAATAAGGGCCTTGTAATTACTGGTGCACTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0006950 GO:0006970 GO:0007275 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009555 GO:0009628 GO:0009639 GO:0009651 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0044706 GO:0044877 GO:0046872 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051015 GO:0051704 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

331

Amino Acids

36.6

Weight (kDa)

9.26

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	16 - 79	3.8e-17	Annexin
Annexin	PF00191	88 - 148	4.7e-10	Annexin
Annexin	PF00191	169 - 234	3.4e-20	Annexin
Annexin	PF00191	244 - 309	2.1e-24	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68090 AT1G68090 AT5G10220 AT5G10230
fragaria_vesca	FvH4_5g36750 FvH4_5g36780
malus_domestica	MD08G1187000.v1.1 MD15G1372900.v1.1 MD16G1013400.v1.1
prunus_persica	Prupe.1G337800_v2.0.a1 Prupe.1G337800_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1
pyrus_communis	pycom08g16080 pycom15g33390
rosa_chinensis	RchiOBHm_Chr4g0433651 RchiOBHm_Chr7g0242801 RchiOBHm_Chr7g0242891
rosa_laevigata	RLG00000000871 RLG00000000878 RLG00000006741
rosa_multiflora	Rmu_sc0000312.1_g000020 Rmu_sc0004165.1_g000047 Rmu_sc0004165.1_g000053 Rmu_sc0007085.1_g000001 Rmu_sc0007085.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375100
rosa_rugosa	Rorug07G0317500 Rorug07G0317600
rosa_samantha	Rh4DG329300 Rh7AG472200 Rh7AG472500 Rh7AG473200 Rh7BG442900 Rh7BG443200 Rh7CG489400 Rh7CG490100 Rh7DG457900 Rh7DG458400
rosa_wichuraiana	Rw4G028130 Rw7G039090 Rw7G039130 Rw7G039340 Rw7G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	366
AclWI	GGATC	2 cut(s)	235, 248
AcoI	YGGCCR	1 cut(s)	525
AcsI	RAATTY	3 cut(s)	479, 637, 901
AcyI	GRCGYC	2 cut(s)	48, 264
AfaI	GTAC	7 cut(s)	158, 163, 170, 467, 731, 784, 845
AfiI	CCNNNNNNNGG	3 cut(s)	462, 523, 962
AgsI	TTSAA	4 cut(s)	73, 358, 382, 871
AhlI	ACTAGT	1 cut(s)	985
AluBI	AGCT	2 cut(s)	205, 612
AluI	AGCT	2 cut(s)	205, 612
Alw21I	GWGCWC	3 cut(s)	207, 614, 985
Alw26I	GTCTC	3 cut(s)	659, 884, 942
Alw44I	GTGCAC	1 cut(s)	981
AlwI	GGATC	2 cut(s)	235, 248
AoxI	GGCC	2 cut(s)	525, 964
ApaLI	GTGCAC	1 cut(s)	981
ApeKI	GCWGC	2 cut(s)	84, 128
ApoI	RAATTY	3 cut(s)	479, 637, 901
AspLEI	GCGC	6 cut(s)	42, 140, 151, 153, 192, 308
AspS9I	GGNCC	1 cut(s)	964
AsuC2I	CCSGG	3 cut(s)	590, 673, 723
AsuHPI	GGTGA	8 cut(s)	27, 175, 280, 445, 619, 667, 706, 814
BaeGI	GKGCMC	1 cut(s)	985
BamHI	GGATCC	1 cut(s)	240
BanII	GRGCYC	3 cut(s)	207, 595, 614
BarI	GAAGNNNNNNTAC	2 cut(s)	827, 859
Bbv12I	GWGCWC	3 cut(s)	207, 614, 985
BbvI	GCAGC	2 cut(s)	71, 140
BccI	CCATC	2 cut(s)	59, 396
BceAI	ACGGC	1 cut(s)	83
BciVI	GTATCC	1 cut(s)	735
BclI	TGATCA	1 cut(s)	715
BcnI	CCSGG	3 cut(s)	590, 673, 723
BcoDI	GTCTC	3 cut(s)	659, 884, 942
BcuI	ACTAGT	1 cut(s)	985
BfaI	CTAG	4 cut(s)	392, 542, 738, 986
BfoI	RGCGCY	1 cut(s)	193
BfuI	GTATCC	1 cut(s)	735
BisI	GCNGC	5 cut(s)	85, 96, 129, 309, 495
BlpI	GCTNAGC	1 cut(s)	206
BlsI	GCNGC	5 cut(s)	86, 97, 130, 310, 496
Bme1390I	CCNGG	3 cut(s)	590, 673, 723
BmgT120I	GGNCC	1 cut(s)	964
BmiI	GGNNCC	2 cut(s)	242, 295
BmrFI	CCNGG	3 cut(s)	590, 673, 723
BpmI	CTGGAG	2 cut(s)	725, 924
Bpu1102I	GCTNAGC	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	413
BpuMI	CCSGG	3 cut(s)	590, 673, 723
BsaHI	GRCGYC	2 cut(s)	48, 264
BsaJI	CCNNGG	2 cut(s)	174, 315
Bsc4I	CCNNNNNNNGG	3 cut(s)	462, 523, 962
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	982
BseDI	CCNNGG	2 cut(s)	174, 315
BseGI	GGATG	5 cut(s)	108, 416, 718, 781, 952
BseLI	CCNNNNNNNGG	3 cut(s)	462, 523, 962
BseMII	CTCAG	3 cut(s)	220, 635, 879
BseNI	ACTGG	1 cut(s)	982
BsePI	GCGCGC	1 cut(s)	149
BseRI	GAGGAG	4 cut(s)	187, 221, 224, 361
BseSI	GKGCMC	1 cut(s)	985
BseXI	GCAGC	2 cut(s)	71, 140
BseYI	CCCAGC	1 cut(s)	442
BsgI	GTGCAG	1 cut(s)	395
BshFI	GGCC	2 cut(s)	527, 966
BsiHKAI	GWGCWC	3 cut(s)	207, 614, 985
BsiSI	CCGG	6 cut(s)	291, 420, 528, 589, 672, 722
BslFI	GGGAC	2 cut(s)	559, 784
BslI	CCNNNNNNNGG	3 cut(s)	462, 523, 962
BsmAI	GTCTC	3 cut(s)	659, 884, 942
BsmFI	GGGAC	2 cut(s)	559, 784
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	2 cut(s)	527, 966
Bsp1286I	GDGCHC	4 cut(s)	207, 595, 614, 985
Bsp143I	GATC	3 cut(s)	240, 345, 715
Bsp1720I	GCTNAGC	1 cut(s)	206
BspANI	GGCC	2 cut(s)	527, 966
BspCNI	CTCAG	3 cut(s)	219, 636, 880
BspLI	GGNNCC	2 cut(s)	242, 295
BspPI	GGATC	2 cut(s)	235, 248
BsrFI	RCCGGY	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	982
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	2 cut(s)	174, 315
BssHII	GCGCGC	1 cut(s)	149
BssMI	GATC	3 cut(s)	240, 345, 715
BssNI	GRCGYC	2 cut(s)	48, 264
Bst4CI	ACNGT	1 cut(s)	161
BstACI	GRCGYC	2 cut(s)	48, 264
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	3 cut(s)	206, 644, 888
BstF5I	GGATG	5 cut(s)	108, 416, 718, 781, 952
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	6 cut(s)	42, 140, 151, 153, 192, 308
BstKTI	GATC	3 cut(s)	243, 348, 718
BstMAI	GTCTC	3 cut(s)	659, 884, 942
BstMBI	GATC	3 cut(s)	240, 345, 715
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 137, 146
BstNSI	RCATGY	1 cut(s)	631
BstSCI	CCNGG	3 cut(s)	588, 671, 721
BstSLI	GKGCMC	1 cut(s)	985
BstV1I	GCAGC	2 cut(s)	71, 140
BstX2I	RGATCY	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	240
BsuI	GTATCC	1 cut(s)	735
BsuRI	GGCC	2 cut(s)	527, 966
BtgZI	GCGATG	1 cut(s)	770
BtsCI	GGATG	5 cut(s)	108, 416, 718, 781, 952
Cac8I	GCNNGC	1 cut(s)	151
CfoI	GCGC	6 cut(s)	42, 140, 151, 153, 192, 308
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	1 cut(s)	964
CseI	GACGC	4 cut(s)	56, 134, 272, 515
Csp6I	GTAC	7 cut(s)	157, 162, 169, 466, 730, 783, 844
CviAII	CATG	4 cut(s)	166, 523, 628, 686
CviQI	GTAC	7 cut(s)	157, 162, 169, 466, 730, 783, 844
DdeI	CTNAG	3 cut(s)	206, 644, 888
DpnI	GATC	3 cut(s)	242, 347, 717
DpnII	GATC	3 cut(s)	240, 345, 715
EaeI	YGGCCR	1 cut(s)	525
EciI	GGCGGA	2 cut(s)	512, 827
Ecl136II	GAGCTC	2 cut(s)	205, 612
Eco24I	GRGCYC	3 cut(s)	207, 595, 614
Eco53kI	GAGCTC	2 cut(s)	205, 612
EcoICRI	GAGCTC	2 cut(s)	205, 612
EcoO109I	RGGNCCY	1 cut(s)	964
EcoRI	GAATTC	2 cut(s)	479, 637
EcoT38I	GRGCYC	3 cut(s)	207, 595, 614
FaeI	CATG	4 cut(s)	169, 526, 631, 689
FaqI	GGGAC	2 cut(s)	559, 784
FatI	CATG	4 cut(s)	165, 522, 627, 685
FauI	CCCGC	2 cut(s)	259, 266
FbaI	TGATCA	1 cut(s)	715
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	5 cut(s)	85, 96, 129, 309, 495
FokI	GGATG	5 cut(s)	95, 403, 705, 788, 939
FriOI	GRGCYC	3 cut(s)	207, 595, 614
Fsp4HI	GCNGC	5 cut(s)	85, 96, 129, 309, 495
FspBI	CTAG	4 cut(s)	392, 542, 738, 986
GlaI	GCGC	6 cut(s)	41, 139, 150, 152, 191, 307
GluI	GCNGC	5 cut(s)	85, 96, 129, 309, 495
GsaI	CCCAGC	1 cut(s)	446
GsuI	CTGGAG	2 cut(s)	725, 924
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	2 cut(s)	527, 966
HapII	CCGG	6 cut(s)	291, 420, 528, 589, 672, 722
HgaI	GACGC	4 cut(s)	56, 134, 272, 515
HhaI	GCGC	6 cut(s)	42, 140, 151, 153, 192, 308
Hin1I	GRCGYC	2 cut(s)	48, 264
Hin1II	CATG	4 cut(s)	169, 526, 631, 689
Hin6I	GCGC	6 cut(s)	40, 138, 149, 151, 190, 306
HinP1I	GCGC	6 cut(s)	40, 138, 149, 151, 190, 306
HinfI	GANTC	2 cut(s)	433, 700
HpaII	CCGG	6 cut(s)	291, 420, 528, 589, 672, 722
HphI	GGTGA	8 cut(s)	27, 175, 280, 445, 619, 667, 706, 814
Hpy166II	GTNNAC	2 cut(s)	367, 983
Hpy188I	TCNGA	9 cut(s)	175, 202, 298, 407, 600, 645, 889, 927, 957
Hpy188III	TCNNGA	6 cut(s)	238, 330, 392, 430, 704, 941
Hpy8I	GTNNAC	2 cut(s)	367, 983
Hpy99I	CGWCG	3 cut(s)	50, 128, 266
HpyAV	CCTTC	3 cut(s)	79, 655, 754
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	3 cut(s)	412, 748, 983
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 137, 146
HpyF3I	CTNAG	3 cut(s)	206, 644, 888
Hsp92I	GRCGYC	2 cut(s)	48, 264
Hsp92II	CATG	4 cut(s)	169, 526, 631, 689
HspAI	GCGC	6 cut(s)	40, 138, 149, 151, 190, 306
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	3 cut(s)	240, 345, 715
LmnI	GCTCC	2 cut(s)	299, 332
Lsp1109I	GCAGC	2 cut(s)	71, 140
MaeI	CTAG	4 cut(s)	392, 542, 738, 986
MaeIII	GTNAC	4 cut(s)	278, 451, 694, 802
MalI	GATC	3 cut(s)	242, 347, 717
MauBI	CGCGCGCG	1 cut(s)	149
MboI	GATC	3 cut(s)	240, 345, 715
MboII	GAAGA	4 cut(s)	670, 847, 862, 908
MflI	RGATCY	1 cut(s)	240
MhlI	GDGCHC	4 cut(s)	207, 595, 614, 985
MluCI	AATT	5 cut(s)	479, 560, 637, 901, 972
MmeI	TCCRAC	1 cut(s)	321
MseI	TTAA	2 cut(s)	11, 991
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	6 cut(s)	291, 420, 528, 589, 672, 722
MspR9I	CCNGG	3 cut(s)	590, 673, 723
Mva1269I	GAATGC	1 cut(s)	607
MwoI	GCNNNNNNNGC	3 cut(s)	84, 137, 146
NciI	CCSGG	3 cut(s)	590, 673, 723
NdeII	GATC	3 cut(s)	240, 345, 715
NlaIII	CATG	4 cut(s)	169, 526, 631, 689
NlaIV	GGNNCC	2 cut(s)	242, 295
NmeAIII	GCCGAG	1 cut(s)	593
NmuCI	GTSAC	4 cut(s)	278, 451, 694, 802
NspI	RCATGY	1 cut(s)	631
PauI	GCGCGC	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 270
PctI	GAATGC	1 cut(s)	607
PfeI	GAWTC	2 cut(s)	433, 700
PfoI	TCCNGGA	1 cut(s)	671
PkrI	GCNGC	5 cut(s)	86, 97, 130, 310, 496
Psp124BI	GAGCTC	2 cut(s)	207, 614
PspFI	CCCAGC	1 cut(s)	442
PspN4I	GGNNCC	2 cut(s)	242, 295
PspPI	GGNCC	1 cut(s)	964
PsuI	RGATCY	1 cut(s)	240
PteI	GCGCGC	1 cut(s)	149
RsaI	GTAC	7 cut(s)	158, 163, 170, 467, 731, 784, 845
RsaNI	GTAC	7 cut(s)	157, 162, 169, 466, 730, 783, 844
RseI	CAYNNNNRTG	1 cut(s)	600
SacI	GAGCTC	2 cut(s)	207, 614
SaqAI	TTAA	2 cut(s)	11, 991
SatI	GCNGC	5 cut(s)	85, 96, 129, 309, 495
Sau3AI	GATC	3 cut(s)	240, 345, 715
Sau96I	GGNCC	1 cut(s)	964
ScrFI	CCNGG	3 cut(s)	590, 673, 723
SduI	GDGCHC	4 cut(s)	207, 595, 614, 985
SetI	ASST	9 cut(s)	35, 60, 207, 321, 429, 467, 614, 731, 934
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SpeI	ACTAGT	1 cut(s)	985
Sse9I	AATT	5 cut(s)	479, 560, 637, 901, 972
SspMI	CTAG	4 cut(s)	392, 542, 738, 986
SstI	GAGCTC	2 cut(s)	207, 614
StyD4I	CCNGG	3 cut(s)	588, 671, 721
TaaI	ACNGT	1 cut(s)	161
TaqI	TCGA	5 cut(s)	54, 374, 483, 567, 681
TasI	AATT	5 cut(s)	479, 560, 637, 901, 972
TatI	WGTACW	3 cut(s)	156, 168, 782
TauI	GCSGC	3 cut(s)	98, 311, 497
TfiI	GAWTC	2 cut(s)	433, 700
Tru1I	TTAA	2 cut(s)	11, 991
Tru9I	TTAA	2 cut(s)	11, 991
TseFI	GTSAC	4 cut(s)	278, 451, 694, 802
TseI	GCWGC	2 cut(s)	84, 128
Tsp45I	GTSAC	4 cut(s)	278, 451, 694, 802
TspDTI	ATGAA	3 cut(s)	511, 773, 941
TspGWI	ACGGA	2 cut(s)	266, 788
VneI	GTGCAC	1 cut(s)	981
XapI	RAATTY	3 cut(s)	479, 637, 901
XbaI	TCTAGA	1 cut(s)	391
XceI	RCATGY	1 cut(s)	631
XcmI	CCANNNNNNNNNTGG	1 cut(s)	854
XmiI	GTMKAC	1 cut(s)	366
XspI	CTAG	4 cut(s)	392, 542, 738, 986

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.