Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001905

Physical Location & Seq

Genomic Coordinates Reverse (-)

54815718 .. 54817591

Gene Structure 1874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G028130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCATCTGTGATCATCCCACCGGTGCCACCTTCGCTGCGTGATGATGCTGCTCATCTCTACCAGGCCTTTAAAGGATTTGGATGTGATACTGCAGCAGTAGTCAATATCCTTGCTCACAGGAATATTGCAACACAGCGTGATGCCATCCAAAAAAAATACAACACCATGCACTCCAAAGATCTCAACAAGCGCTTGTCCTCCGAACTTAGTGGACATGTCAAGAAAGCAATATTGTTGTGGATGCCTGATCCGGCAACGAGTGATGCAAACATAGCTACGGCCAGTGAAGTCATATGCTCTCGTACTCCGTCCCAGCTGCGACAATTCAAGCAAATCTACTTTTCAAATTTCAGTGTTGGCCTCGAGGATGACATTGCATCATATGCTCTCTTGCTGCTTGCATTTGTTAGCGAATCCCAGTACGAAGGCCCAGAATTCGATCAATTAGAAGTGGAGAAAGATTCAGAAGCTCAGTATAAGGCCGGGGGGAAGAGATTTGCGGGAGCCGTTGATAAGACTTTCATAGATATATTTAGCGGAAGAAGCAGGGCGCTTTTGGCTGCTGTTAGCTCTACTTACCAAAAAAAATATCGCCATACATTGGAAAAGGAAACATCTGGAAATTTTGGGCATGCGCTTATGACTATCTTACAATGTGCTCAACATCGTGCCATTTTTTTTTTTGCGAAGGTTTTACGTAAGGCGATTAAGGGTTTGGGTACGGATGACCCGATCGACACTGACAAGGAGAAATATGGAAAAGCATTGAACGATGCAGTTCATTCTGATACTACTGGACATTACAGGGCCTTTCTTCTCGCTCTTTTAGGCACCAATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0006950 GO:0006970 GO:0007275 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009555 GO:0009628 GO:0009639 GO:0009651 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0044706 GO:0044877 GO:0046872 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051015 GO:0051704 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

281

Amino Acids

31.03

Weight (kDa)

8.6

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	16 - 80	1.4e-15	Annexin
Annexin	PF00191	159 - 217	6.7e-06	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68090 AT1G68090 AT5G10220 AT5G10230
fragaria_vesca	FvH4_5g36750 FvH4_5g36780
malus_domestica	MD08G1187000.v1.1 MD15G1372900.v1.1 MD16G1013400.v1.1
prunus_persica	Prupe.1G337800_v2.0.a1 Prupe.1G337800_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1
pyrus_communis	pycom08g16080 pycom15g33390
rosa_chinensis	RchiOBHm_Chr4g0433651 RchiOBHm_Chr7g0242801 RchiOBHm_Chr7g0242891
rosa_laevigata	RLG00000000871 RLG00000000878 RLG00000006741
rosa_multiflora	Rmu_sc0000312.1_g000020 Rmu_sc0004165.1_g000047 Rmu_sc0004165.1_g000053 Rmu_sc0007085.1_g000001 Rmu_sc0007085.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375100
rosa_rugosa	Rorug07G0317500 Rorug07G0317600
rosa_samantha	Rh4DG329300 Rh7AG472200 Rh7AG472500 Rh7AG473200 Rh7BG442900 Rh7BG443200 Rh7CG489400 Rh7CG490100 Rh7DG457900 Rh7DG458400
rosa_wichuraiana	Rw4G028130 Rw7G039090 Rw7G039130 Rw7G039340 Rw7G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	365
AccB1I	GGYRCC	2 cut(s)	25, 833
AccB7I	CCANNNNNTGG	1 cut(s)	604
AciI	CCGC	2 cut(s)	503, 540
AclWI	GGATC	1 cut(s)	245
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	3 cut(s)	349, 437, 625
AdeI	CACNNNGTG	1 cut(s)	140
AfaI	GTAC	3 cut(s)	307, 425, 724
AfeI	AGCGCT	1 cut(s)	194
AfiI	CCNNNNNNNGG	1 cut(s)	604
AflIII	ACRYGT	1 cut(s)	217
AgeI	ACCGGT	1 cut(s)	22
AgsI	TTSAA	3 cut(s)	331, 348, 772
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	4 cut(s)	278, 319, 473, 573
AluI	AGCT	4 cut(s)	278, 319, 473, 573
Alw21I	GWGCWC	1 cut(s)	664
AlwI	GGATC	1 cut(s)	245
Ama87I	CYCGRG	1 cut(s)	365
Aor51HI	AGCGCT	1 cut(s)	194
AoxI	GGCC	6 cut(s)	66, 282, 361, 430, 483, 810
ApeKI	GCWGC	6 cut(s)	37, 50, 95, 319, 397, 563
ApoI	RAATTY	3 cut(s)	349, 437, 625
AsiGI	ACCGGT	1 cut(s)	22
AspLEI	GCGC	3 cut(s)	195, 556, 640
AspS9I	GGNCC	2 cut(s)	431, 810
AsuC2I	CCSGG	1 cut(s)	487
AvaI	CYCGRG	1 cut(s)	365
BanI	GGYRCC	2 cut(s)	25, 833
Bbv12I	GWGCWC	1 cut(s)	664
BbvI	GCAGC	6 cut(s)	24, 37, 107, 306, 384, 550
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	2 cut(s)	297, 494
BciT130I	CCWGG	1 cut(s)	65
BclI	TGATCA	1 cut(s)	12
BcnI	CCSGG	1 cut(s)	487
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	2 cut(s)	196, 557
BglII	AGATCT	1 cut(s)	181
BisI	GCNGC	6 cut(s)	38, 51, 96, 320, 398, 564
BlsI	GCNGC	6 cut(s)	39, 52, 97, 321, 399, 565
Bme1390I	CCNGG	2 cut(s)	65, 487
BmeT110I	CYCGRG	1 cut(s)	365
BmgT120I	GGNCC	2 cut(s)	431, 810
BmiI	GGNNCC	3 cut(s)	27, 508, 835
BmrFI	CCNGG	2 cut(s)	65, 487
BmrI	ACTGGG	1 cut(s)	415
BmsI	GCATC	7 cut(s)	14, 37, 133, 234, 256, 389, 766
BmuI	ACTGGG	1 cut(s)	415
BpuMI	CCSGG	1 cut(s)	487
BsaAI	YACGTR	1 cut(s)	701
BsaJI	CCNNGG	1 cut(s)	486
BsaWI	WCCGGW	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	1 cut(s)	604
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	3 cut(s)	285, 421, 802
Bse3DI	GCAATG	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	6 cut(s)	15, 89, 147, 249, 376, 733
BseLI	CCNNNNNNNGG	1 cut(s)	604
BseMI	GCAATG	1 cut(s)	375
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	3 cut(s)	285, 421, 802
BseXI	GCAGC	6 cut(s)	24, 37, 107, 306, 384, 550
BseYI	CCCAGC	1 cut(s)	315
Bsh1285I	CGRYCG	1 cut(s)	738
BshFI	GGCC	6 cut(s)	68, 284, 363, 432, 485, 812
BshNI	GGYRCC	2 cut(s)	25, 833
BshTI	ACCGGT	1 cut(s)	22
BsiEI	CGRYCG	1 cut(s)	738
BsiHKAI	GWGCWC	1 cut(s)	664
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	3 cut(s)	23, 254, 486
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	604
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	6 cut(s)	68, 284, 363, 432, 485, 812
BsoBI	CYCGRG	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	664
Bsp143I	GATC	5 cut(s)	12, 181, 250, 442, 735
BspACI	CCGC	2 cut(s)	503, 540
BspANI	GGCC	6 cut(s)	68, 284, 363, 432, 485, 812
BspCNI	CTCAG	1 cut(s)	487
BspLI	GGNNCC	3 cut(s)	27, 508, 835
BspMAI	CTGCAG	1 cut(s)	97
BspPI	GGATC	1 cut(s)	245
BspT107I	GGYRCC	2 cut(s)	25, 833
BsrDI	GCAATG	1 cut(s)	375
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	3 cut(s)	285, 421, 802
BssAI	RCCGGY	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	5 cut(s)	12, 181, 250, 442, 735
Bst2UI	CCWGG	1 cut(s)	65
Bst6I	CTCTTC	1 cut(s)	488
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstBAI	YACGTR	1 cut(s)	701
BstC8I	GCNNGC	2 cut(s)	402, 636
BstDEI	CTNAG	3 cut(s)	209, 474, 843
BstF5I	GGATG	6 cut(s)	15, 89, 147, 249, 376, 733
BstH2I	RGCGCY	2 cut(s)	196, 557
BstHHI	GCGC	3 cut(s)	195, 556, 640
BstKTI	GATC	5 cut(s)	15, 184, 253, 445, 738
BstMBI	GATC	5 cut(s)	12, 181, 250, 442, 735
BstMCI	CGRYCG	1 cut(s)	738
BstMWI	GCNNNNNNNGC	5 cut(s)	34, 275, 386, 546, 560
BstNI	CCWGG	1 cut(s)	65
BstNSI	RCATGY	2 cut(s)	221, 638
BstSCI	CCNGG	2 cut(s)	63, 485
BstSFI	CTRYAG	1 cut(s)	93
BstSNI	TACGTA	1 cut(s)	701
BstV1I	GCAGC	6 cut(s)	24, 37, 107, 306, 384, 550
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	6 cut(s)	68, 284, 363, 432, 485, 812
BtsCI	GGATG	6 cut(s)	15, 89, 147, 249, 376, 733
BtsIMutI	CAGTG	3 cut(s)	292, 361, 741
Cac8I	GCNNGC	2 cut(s)	402, 636
CfoI	GCGC	3 cut(s)	195, 556, 640
Cfr10I	RCCGGY	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	431, 810
Csp6I	GTAC	3 cut(s)	306, 424, 723
CspAI	ACCGGT	1 cut(s)	22
CviAII	CATG	3 cut(s)	169, 218, 635
CviQI	GTAC	3 cut(s)	306, 424, 723
DdeI	CTNAG	3 cut(s)	209, 474, 843
DpnI	GATC	5 cut(s)	14, 183, 252, 444, 737
DpnII	GATC	5 cut(s)	12, 181, 250, 442, 735
DraI	TTTAAA	1 cut(s)	73
DraIII	CACNNNGTG	1 cut(s)	140
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	488
EarI	CTCTTC	1 cut(s)	488
Eco105I	TACGTA	1 cut(s)	701
Eco147I	AGGCCT	1 cut(s)	68
Eco47III	AGCGCT	1 cut(s)	194
Eco88I	CYCGRG	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	810
EcoRI	GAATTC	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	63
FaeI	CATG	3 cut(s)	172, 221, 638
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	3 cut(s)	168, 217, 634
FauI	CCCGC	1 cut(s)	496
FauNDI	CATATG	2 cut(s)	296, 385
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	6 cut(s)	38, 51, 96, 320, 398, 564
FokI	GGATG	6 cut(s)	2, 96, 134, 256, 383, 740
Fsp4HI	GCNGC	6 cut(s)	38, 51, 96, 320, 398, 564
GlaI	GCGC	3 cut(s)	194, 555, 639
GluI	GCNGC	6 cut(s)	38, 51, 96, 320, 398, 564
GsaI	CCCAGC	1 cut(s)	319
HaeII	RGCGCY	2 cut(s)	196, 557
HaeIII	GGCC	6 cut(s)	68, 284, 363, 432, 485, 812
HapII	CCGG	3 cut(s)	23, 254, 486
HhaI	GCGC	3 cut(s)	195, 556, 640
Hin1II	CATG	3 cut(s)	172, 221, 638
Hin6I	GCGC	3 cut(s)	193, 554, 638
HinP1I	GCGC	3 cut(s)	193, 554, 638
HinfI	GANTC	2 cut(s)	416, 464
HpaII	CCGG	3 cut(s)	23, 254, 486
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	3 cut(s)	205, 469, 790
Hpy188III	TCNNGA	2 cut(s)	223, 621
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	42, 422, 685
HpyCH4IV	ACGT	1 cut(s)	700
HpyCH4V	TGCA	7 cut(s)	95, 131, 172, 269, 380, 404, 779
HpyF10VI	GCNNNNNNNGC	5 cut(s)	34, 275, 386, 546, 560
HpyF3I	CTNAG	3 cut(s)	209, 474, 843
HpySE526I	ACGT	1 cut(s)	700
Hsp92II	CATG	3 cut(s)	172, 221, 638
HspAI	GCGC	3 cut(s)	193, 554, 638
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	5 cut(s)	12, 181, 250, 442, 735
LmnI	GCTCC	1 cut(s)	506
Lsp1109I	GCAGC	6 cut(s)	24, 37, 107, 306, 384, 550
LweI	GCATC	7 cut(s)	14, 37, 133, 234, 256, 389, 766
MaeII	ACGT	1 cut(s)	700
MalI	GATC	5 cut(s)	14, 183, 252, 444, 737
MboI	GATC	5 cut(s)	12, 181, 250, 442, 735
MboII	GAAGA	3 cut(s)	505, 555, 809
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	664
MluCI	AATT	5 cut(s)	326, 349, 437, 446, 625
MnlI	CCTC	3 cut(s)	211, 361, 374
MseI	TTAA	2 cut(s)	72, 711
MspA1I	CMGCKG	1 cut(s)	319
MspI	CCGG	3 cut(s)	23, 254, 486
MspR9I	CCNGG	2 cut(s)	65, 487
MvaI	CCWGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	5 cut(s)	34, 275, 386, 546, 560
NciI	CCSGG	1 cut(s)	487
NdeI	CATATG	2 cut(s)	296, 385
NdeII	GATC	5 cut(s)	12, 181, 250, 442, 735
NlaIII	CATG	3 cut(s)	172, 221, 638
NlaIV	GGNNCC	3 cut(s)	27, 508, 835
NspI	RCATGY	2 cut(s)	221, 638
PaeI	GCATGC	1 cut(s)	638
PaeR7I	CTCGAG	1 cut(s)	365
PceI	AGGCCT	1 cut(s)	68
PciI	ACATGT	1 cut(s)	217
PcsI	WCGNNNNNNNCGW	1 cut(s)	731
PfeI	GAWTC	2 cut(s)	416, 464
PflMI	CCANNNNNTGG	1 cut(s)	604
PinAI	ACCGGT	1 cut(s)	22
PkrI	GCNGC	6 cut(s)	39, 52, 97, 321, 399, 565
Ple19I	CGATCG	1 cut(s)	738
Ppu21I	YACGTR	1 cut(s)	701
PscI	ACATGT	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	63
PspFI	CCCAGC	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	3 cut(s)	27, 508, 835
PspPI	GGNCC	2 cut(s)	431, 810
PspXI	VCTCGAGB	1 cut(s)	365
PstI	CTGCAG	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	181
PvuI	CGATCG	1 cut(s)	738
PvuII	CAGCTG	1 cut(s)	319
RsaI	GTAC	3 cut(s)	307, 425, 724
RsaNI	GTAC	3 cut(s)	306, 424, 723
SaqAI	TTAA	2 cut(s)	72, 711
SatI	GCNGC	6 cut(s)	38, 51, 96, 320, 398, 564
Sau3AI	GATC	5 cut(s)	12, 181, 250, 442, 735
Sau96I	GGNCC	2 cut(s)	431, 810
ScrFI	CCNGG	2 cut(s)	65, 487
SduI	GDGCHC	1 cut(s)	664
SetI	ASST	7 cut(s)	34, 280, 321, 475, 575, 696, 703
SfaNI	GCATC	7 cut(s)	14, 37, 133, 234, 256, 389, 766
SfcI	CTRYAG	1 cut(s)	93
Sfr274I	CTCGAG	1 cut(s)	365
SgrAI	CRCCGGYG	1 cut(s)	22
SlaI	CTCGAG	1 cut(s)	365
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
SnaBI	TACGTA	1 cut(s)	701
SphI	GCATGC	1 cut(s)	638
Sse9I	AATT	5 cut(s)	326, 349, 437, 446, 625
SseBI	AGGCCT	1 cut(s)	68
SsiI	CCGC	2 cut(s)	503, 540
SspI	AATATT	2 cut(s)	127, 234
StuI	AGGCCT	1 cut(s)	68
StyD4I	CCNGG	2 cut(s)	63, 485
TaiI	ACGT	1 cut(s)	703
TaqI	TCGA	3 cut(s)	366, 441, 738
TasI	AATT	5 cut(s)	326, 349, 437, 446, 625
TfiI	GAWTC	2 cut(s)	416, 464
Tru1I	TTAA	2 cut(s)	72, 711
Tru9I	TTAA	2 cut(s)	72, 711
TscAI	CASTG	3 cut(s)	292, 361, 748
TseI	GCWGC	6 cut(s)	37, 50, 95, 319, 397, 563
TspDTI	ATGAA	2 cut(s)	514, 773
TspGWI	ACGGA	2 cut(s)	300, 740
TspRI	CASTG	3 cut(s)	292, 361, 748
Van91I	CCANNNNNTGG	1 cut(s)	604
XapI	RAATTY	3 cut(s)	349, 437, 625
XceI	RCATGY	2 cut(s)	221, 638
XhoI	CTCGAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.