Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007085.1

Orthogroup ID

OG0001905

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2188

Gene Structure 2188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007085.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1067 bp

gcggaaataccaagaaagccctcctcctctggatccccgaccccgccacccgcgacgccaccatcgtccgtcacgccctcatcggctccgaccaccgcgccgccaccgaggtcatctgctcccgaaccccctcccagatcgccctattcaagcaagtctactcctcgattttcaatacccatctagaacgcgacatcggactttacacctccggcgacctcaagaatctcctgctgggtttcgtcaccacgcagaggtacgagggcttcgaattcgacagggtagcggcggagaacgacgcgaaatccctgttcatggccggagagaaaagactggggactgatgagaagcaatttatcgaagtttttagtaaaagaagccgggctcatctgaatgcggtgagctcggcttatgagagcatgtacggaaattctctgagaaaagcggtgaagaaggagacttccgggaacttcgagcatggactggtgacgattctggagtgtgctgatcatccagggaggtactttgctagggtactgcataaagccatgaagggtttggggacggatgatagtacattgttgagagtggtggtgacgagggcggagattgatatgatgtatgtgaagattgagtaccagaagaagtatggtaagagtttgaatgaggctgtaaagtctgagacttctgggaatttcagggcttttcttctggctctgttagtgtcacagggcactctgtttctgagagtatggagggctacgtttgaagaggtcaaggtcttggtcttgtcgttgggggagtcccttgacctgacttcttcttcaagtgttgtggacgaggagagcaccaacctcgccacaagggcgttacccttgcttcgctggttgagagagagtctcggtggcagtggtactggcagtcggctcttggagagactaggactggaagtacggtcgccgggttggtctggtgatgctgacaatcggctcttggagagactaggattggcgcgcggtcaccgggtttcaatgaagttgaaggtttgctccggggaggctttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0006950 GO:0006970 GO:0007275 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009555 GO:0009628 GO:0009639 GO:0009651 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0044706 GO:0044877 GO:0046872 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051015 GO:0051704 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

354

Amino Acids

39.31

Weight (kDa)

9.2

Isoelectric Point (pI)

30.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68090 AT1G68090 AT5G10220 AT5G10230
fragaria_vesca	FvH4_5g36750 FvH4_5g36780
malus_domestica	MD08G1187000.v1.1 MD15G1372900.v1.1 MD16G1013400.v1.1
prunus_persica	Prupe.1G337800_v2.0.a1 Prupe.1G337800_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1
pyrus_communis	pycom08g16080 pycom15g33390
rosa_chinensis	RchiOBHm_Chr4g0433651 RchiOBHm_Chr7g0242801 RchiOBHm_Chr7g0242891
rosa_laevigata	RLG00000000871 RLG00000000878 RLG00000006741
rosa_multiflora	Rmu_sc0000312.1_g000020 Rmu_sc0004165.1_g000047 Rmu_sc0004165.1_g000053 Rmu_sc0007085.1_g000001 Rmu_sc0007085.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375100
rosa_rugosa	Rorug07G0317500 Rorug07G0317600
rosa_samantha	Rh4DG329300 Rh7AG472200 Rh7AG472500 Rh7AG473200 Rh7BG442900 Rh7BG443200 Rh7CG489400 Rh7CG490100 Rh7DG457900 Rh7DG458400
rosa_wichuraiana	Rw4G028130 Rw7G039090 Rw7G039130 Rw7G039340 Rw7G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	158
AccII	CGCG	6 cut(s)	53, 98, 191, 301, 1014, 1016
AclWI	GGATC	2 cut(s)	27, 40
AcoI	YGGCCR	1 cut(s)	317
AcsI	RAATTY	3 cut(s)	271, 429, 693
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	8 cut(s)	259, 424, 523, 536, 576, 637, 915, 953
AfiI	CCNNNNNNNGG	2 cut(s)	254, 315
AgsI	TTSAA	7 cut(s)	150, 174, 663, 769, 827, 1031, 1041
AjnI	CCWGG	1 cut(s)	513
AluBI	AGCT	1 cut(s)	404
AluI	AGCT	1 cut(s)	404
Alw21I	GWGCWC	2 cut(s)	406, 850
Alw26I	GTCTC	5 cut(s)	451, 676, 904, 930, 993
AlwI	GGATC	2 cut(s)	27, 40
AoxI	GGCC	1 cut(s)	317
ApoI	RAATTY	3 cut(s)	271, 429, 693
AspLEI	GCGC	3 cut(s)	100, 1014, 1016
AsuC2I	CCSGG	5 cut(s)	382, 465, 962, 1024, 1053
AsuHPI	GGTGA	7 cut(s)	237, 411, 459, 498, 606, 985, 1012
AsuII	TTCGAA	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	736
BamHI	GGATCC	1 cut(s)	32
BanII	GRGCYC	2 cut(s)	387, 406
BarI	GAAGNNNNNNTAC	4 cut(s)	250, 282, 619, 651
Bbv12I	GWGCWC	2 cut(s)	406, 850
BccI	CCATC	2 cut(s)	70, 188
BcgI	CGANNNNNNTGC	2 cut(s)	837, 871
BciT130I	CCWGG	1 cut(s)	515
BclI	TGATCA	1 cut(s)	507
BcnI	CCSGG	5 cut(s)	382, 465, 962, 1024, 1053
BcoDI	GTCTC	5 cut(s)	451, 676, 904, 930, 993
BfaI	CTAG	4 cut(s)	184, 530, 940, 1003
BglI	GCCNNNNNGGC	1 cut(s)	865
BisI	GCNGC	2 cut(s)	101, 287
BlsI	GCNGC	2 cut(s)	102, 288
Bme1390I	CCNGG	6 cut(s)	382, 465, 515, 962, 1024, 1053
BmiI	GGNNCC	2 cut(s)	34, 87
BmrFI	CCNGG	6 cut(s)	382, 465, 515, 962, 1024, 1053
BmrI	ACTGGG	1 cut(s)	343
BmsI	GCATC	1 cut(s)	966
BmuI	ACTGGG	1 cut(s)	343
BplI	GAGNNNNNCTC	2 cut(s)	884, 916
BpmI	CTGGAG	1 cut(s)	517
Bpu14I	TTCGAA	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	205
BpuMI	CCSGG	5 cut(s)	382, 465, 962, 1024, 1053
BsaHI	GRCGYC	1 cut(s)	56
BsaJI	CCNNGG	3 cut(s)	107, 514, 1052
BsaXI	ACNNNNNCTCC	1 cut(s)	1048
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 315
Bse1I	ACTGG	4 cut(s)	338, 488, 921, 950
BseBI	CCWGG	1 cut(s)	515
BseDI	CCNNGG	3 cut(s)	107, 514, 1052
BseGI	GGATG	2 cut(s)	510, 573
BseLI	CCNNNNNNNGG	2 cut(s)	254, 315
BseMII	CTCAG	3 cut(s)	427, 671, 736
BseNI	ACTGG	4 cut(s)	338, 488, 921, 950
BsePI	GCGCGC	1 cut(s)	1012
BseRI	GAGGAG	4 cut(s)	13, 16, 153, 856
BseSI	GKGCMC	1 cut(s)	736
BseYI	CCCAGC	1 cut(s)	234
Bsh1236I	CGCG	6 cut(s)	53, 98, 191, 301, 1014, 1016
Bsh1285I	CGRYCG	1 cut(s)	958
BshFI	GGCC	1 cut(s)	319
BsiEI	CGRYCG	1 cut(s)	958
BsiHKAI	GWGCWC	2 cut(s)	406, 850
BsiSI	CCGG	7 cut(s)	212, 320, 381, 464, 961, 1023, 1052
BslFI	GGGAC	3 cut(s)	351, 576, 789
BslI	CCNNNNNNNGG	2 cut(s)	254, 315
BsmAI	GTCTC	5 cut(s)	451, 676, 904, 930, 993
BsmFI	GGGAC	3 cut(s)	351, 576, 789
BsmI	GAATGC	1 cut(s)	399
BsnI	GGCC	1 cut(s)	319
Bsp119I	TTCGAA	1 cut(s)	269
Bsp1286I	GDGCHC	4 cut(s)	387, 406, 736, 850
Bsp143I	GATC	3 cut(s)	32, 137, 507
BspANI	GGCC	1 cut(s)	319
BspCNI	CTCAG	3 cut(s)	428, 672, 737
BspFNI	CGCG	6 cut(s)	53, 98, 191, 301, 1014, 1016
BspLI	GGNNCC	2 cut(s)	34, 87
BspPI	GGATC	2 cut(s)	27, 40
BspT104I	TTCGAA	1 cut(s)	269
BsrI	ACTGG	4 cut(s)	338, 488, 921, 950
BssECI	CCNNGG	3 cut(s)	107, 514, 1052
BssHII	GCGCGC	1 cut(s)	1012
BssMI	GATC	3 cut(s)	32, 137, 507
BssNI	GRCGYC	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	515
Bst4CI	ACNGT	1 cut(s)	956
Bst6I	CTCTTC	1 cut(s)	764
BstACI	GRCGYC	1 cut(s)	56
BstBI	TTCGAA	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	1014
BstDEI	CTNAG	3 cut(s)	436, 680, 745
BstEII	GGTNACC	1 cut(s)	1018
BstF5I	GGATG	2 cut(s)	510, 573
BstFNI	CGCG	6 cut(s)	53, 98, 191, 301, 1014, 1016
BstHHI	GCGC	3 cut(s)	100, 1014, 1016
BstKTI	GATC	3 cut(s)	35, 140, 510
BstMAI	GTCTC	5 cut(s)	451, 676, 904, 930, 993
BstMBI	GATC	3 cut(s)	32, 137, 507
BstMCI	CGRYCG	1 cut(s)	958
BstMWI	GCNNNNNNNGC	1 cut(s)	865
BstNI	CCWGG	1 cut(s)	515
BstNSI	RCATGY	1 cut(s)	423
BstPI	GGTNACC	1 cut(s)	1018
BstSCI	CCNGG	6 cut(s)	380, 463, 513, 960, 1022, 1051
BstSLI	GKGCMC	1 cut(s)	736
BstUI	CGCG	6 cut(s)	53, 98, 191, 301, 1014, 1016
BstX2I	RGATCY	1 cut(s)	32
BstYI	RGATCY	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	319
BtsCI	GGATG	2 cut(s)	510, 573
BtsI	GCAGTG	1 cut(s)	915
BtsIMutI	CAGTG	1 cut(s)	915
Cac8I	GCNNGC	1 cut(s)	1014
CfoI	GCGC	3 cut(s)	100, 1014, 1016
CseI	GACGC	2 cut(s)	64, 307
Csp6I	GTAC	8 cut(s)	258, 423, 522, 535, 575, 636, 914, 952
CspCI	CAANNNNNGTGG	2 cut(s)	815, 850
CviAII	CATG	4 cut(s)	315, 420, 478, 549
CviQI	GTAC	8 cut(s)	258, 423, 522, 535, 575, 636, 914, 952
DdeI	CTNAG	3 cut(s)	436, 680, 745
DpnI	GATC	3 cut(s)	34, 139, 509
DpnII	GATC	3 cut(s)	32, 137, 507
EaeI	YGGCCR	1 cut(s)	317
Eam1104I	CTCTTC	1 cut(s)	764
EarI	CTCTTC	1 cut(s)	764
EciI	GGCGGA	2 cut(s)	304, 619
Ecl136II	GAGCTC	1 cut(s)	404
Eco24I	GRGCYC	2 cut(s)	387, 406
Eco53kI	GAGCTC	1 cut(s)	404
Eco91I	GGTNACC	1 cut(s)	1018
EcoICRI	GAGCTC	1 cut(s)	404
EcoO65I	GGTNACC	1 cut(s)	1018
EcoRI	GAATTC	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	513
EcoT38I	GRGCYC	2 cut(s)	387, 406
FaeI	CATG	4 cut(s)	318, 423, 481, 552
FaqI	GGGAC	3 cut(s)	351, 576, 789
FatI	CATG	4 cut(s)	314, 419, 477, 548
FauI	CCCGC	2 cut(s)	51, 58
FbaI	TGATCA	1 cut(s)	507
FblI	GTMKAC	1 cut(s)	158
Fnu4HI	GCNGC	2 cut(s)	101, 287
FokI	GGATG	2 cut(s)	497, 580
FriOI	GRGCYC	2 cut(s)	387, 406
Fsp4HI	GCNGC	2 cut(s)	101, 287
FspBI	CTAG	4 cut(s)	184, 530, 940, 1003
GlaI	GCGC	3 cut(s)	99, 1013, 1015
GluI	GCNGC	2 cut(s)	101, 287
GsaI	CCCAGC	1 cut(s)	238
GsuI	CTGGAG	1 cut(s)	517
HaeIII	GGCC	1 cut(s)	319
HapII	CCGG	7 cut(s)	212, 320, 381, 464, 961, 1023, 1052
HgaI	GACGC	2 cut(s)	64, 307
HhaI	GCGC	3 cut(s)	100, 1014, 1016
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	4 cut(s)	318, 423, 481, 552
Hin6I	GCGC	3 cut(s)	98, 1012, 1014
HinP1I	GCGC	3 cut(s)	98, 1012, 1014
HinfI	GANTC	4 cut(s)	225, 492, 802, 897
HpaII	CCGG	7 cut(s)	212, 320, 381, 464, 961, 1023, 1052
HphI	GGTGA	7 cut(s)	237, 411, 459, 498, 606, 985, 1012
Hpy166II	GTNNAC	2 cut(s)	159, 837
Hpy188I	TCNGA	6 cut(s)	90, 199, 392, 437, 681, 746
Hpy188III	TCNNGA	5 cut(s)	30, 122, 184, 222, 496
Hpy8I	GTNNAC	2 cut(s)	159, 837
Hpy99I	CGWCG	2 cut(s)	58, 301
HpyAV	CCTTC	3 cut(s)	447, 546, 1035
HpyCH4III	ACNGT	1 cut(s)	956
HpyCH4IV	ACGT	1 cut(s)	763
HpyCH4V	TGCA	1 cut(s)	540
HpyF10VI	GCNNNNNNNGC	1 cut(s)	865
HpyF3I	CTNAG	3 cut(s)	436, 680, 745
HpySE526I	ACGT	1 cut(s)	763
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	4 cut(s)	318, 423, 481, 552
HspAI	GCGC	3 cut(s)	98, 1012, 1014
Ksp22I	TGATCA	1 cut(s)	507
Kzo9I	GATC	3 cut(s)	32, 137, 507
LmnI	GCTCC	3 cut(s)	91, 124, 1054
LweI	GCATC	1 cut(s)	966
MaeI	CTAG	4 cut(s)	184, 530, 940, 1003
MaeII	ACGT	1 cut(s)	763
MaeIII	GTNAC	7 cut(s)	70, 243, 486, 594, 725, 869, 1018
MalI	GATC	3 cut(s)	34, 139, 509
MboI	GATC	3 cut(s)	32, 137, 507
MboII	GAAGA	7 cut(s)	462, 639, 654, 700, 781, 812, 815
MflI	RGATCY	1 cut(s)	32
MhlI	GDGCHC	4 cut(s)	387, 406, 736, 850
MluCI	AATT	4 cut(s)	271, 352, 429, 693
MlyI	GAGTC	2 cut(s)	811, 906
MmeI	TCCRAC	1 cut(s)	113
MslI	CAYNNNNRTG	1 cut(s)	392
MspI	CCGG	7 cut(s)	212, 320, 381, 464, 961, 1023, 1052
MspR9I	CCNGG	6 cut(s)	382, 465, 515, 962, 1024, 1053
Mva1269I	GAATGC	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	515
MvnI	CGCG	6 cut(s)	53, 98, 191, 301, 1014, 1016
MwoI	GCNNNNNNNGC	1 cut(s)	865
NciI	CCSGG	5 cut(s)	382, 465, 962, 1024, 1053
NdeII	GATC	3 cut(s)	32, 137, 507
NlaIII	CATG	4 cut(s)	318, 423, 481, 552
NlaIV	GGNNCC	2 cut(s)	34, 87
NmeAIII	GCCGAG	1 cut(s)	385
NmuCI	GTSAC	6 cut(s)	70, 243, 486, 594, 725, 1018
NspI	RCATGY	1 cut(s)	423
NspV	TTCGAA	1 cut(s)	269
PauI	GCGCGC	1 cut(s)	1012
PcsI	WCGNNNNNNNCGW	2 cut(s)	62, 266
PctI	GAATGC	1 cut(s)	399
PfeI	GAWTC	2 cut(s)	225, 492
PfoI	TCCNGGA	1 cut(s)	463
PkrI	GCNGC	2 cut(s)	102, 288
PleI	GAGTC	2 cut(s)	810, 905
PpsI	GAGTC	2 cut(s)	810, 905
Psp124BI	GAGCTC	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	513
PspEI	GGTNACC	1 cut(s)	1018
PspFI	CCCAGC	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	513
PspN4I	GGNNCC	2 cut(s)	34, 87
PsuI	RGATCY	1 cut(s)	32
PteI	GCGCGC	1 cut(s)	1012
RsaI	GTAC	8 cut(s)	259, 424, 523, 536, 576, 637, 915, 953
RsaNI	GTAC	8 cut(s)	258, 423, 522, 535, 575, 636, 914, 952
RseI	CAYNNNNRTG	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	406
SatI	GCNGC	2 cut(s)	101, 287
Sau3AI	GATC	3 cut(s)	32, 137, 507
SchI	GAGTC	2 cut(s)	811, 906
ScrFI	CCNGG	6 cut(s)	382, 465, 515, 962, 1024, 1053
SduI	GDGCHC	4 cut(s)	387, 406, 736, 850
SfaNI	GCATC	1 cut(s)	966
SfuI	TTCGAA	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
Sse9I	AATT	4 cut(s)	271, 352, 429, 693
SspMI	CTAG	4 cut(s)	184, 530, 940, 1003
SstI	GAGCTC	1 cut(s)	406
StyD4I	CCNGG	6 cut(s)	380, 463, 513, 960, 1022, 1051
TaaI	ACNGT	1 cut(s)	956
TaiI	ACGT	1 cut(s)	766
TaqI	TCGA	5 cut(s)	166, 269, 275, 359, 473
TasI	AATT	4 cut(s)	271, 352, 429, 693
TatI	WGTACW	1 cut(s)	574
TauI	GCSGC	2 cut(s)	103, 289
TfiI	GAWTC	2 cut(s)	225, 492
TscAI	CASTG	1 cut(s)	915
TseFI	GTSAC	6 cut(s)	70, 243, 486, 594, 725, 1018
Tsp45I	GTSAC	6 cut(s)	70, 243, 486, 594, 725, 1018
TspDTI	ATGAA	3 cut(s)	303, 565, 1048
TspGWI	ACGGA	3 cut(s)	58, 440, 580
TspRI	CASTG	1 cut(s)	915
XapI	RAATTY	3 cut(s)	271, 429, 693
XbaI	TCTAGA	1 cut(s)	183
XceI	RCATGY	1 cut(s)	423
XcmI	CCANNNNNNNNNTGG	2 cut(s)	555, 646
XmiI	GTMKAC	1 cut(s)	158
XspI	CTAG	4 cut(s)	184, 530, 940, 1003

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.