Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001905

Physical Location & Seq

Genomic Coordinates Reverse (-)

65667343 .. 65669295

Gene Structure 1953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG473200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCCGGAGAGAAAAGACTGGGGACTGATGAGAAGAAATTTATCGAAGTTTTTAGTAATCGAAGCCGGGCTCATCTGAATGCGGTGAGCTCGGCTTATGAGAGCATGTATGGGAATTCACTGAGAAAAGCGGTGAAGAAGGAGACTTCCGGGAACTTCGAGCATGGCCTGGTGACGATTCTGGAGTGTGCTGATCATCCAGGGAGGTACTTTGCTAGGGTACTGCACAAAGCGATGAAGGGTTTGGGGACGGATGATAGTACATTGTTGAGAGTGGTGGTGACGAGGGCGGAGATTGATATGATGTATGTGAAGATTGAGTACCAGAAGAAGTATGGTAAGAGTTTGAATGAGGCCGTAAAGTCTGAGACTTCTGGGAATTTCAGGGCTTTTCTTCTGGCTCTTTTAGGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0006950 GO:0006970 GO:0007275 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009555 GO:0009628 GO:0009639 GO:0009651 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0044706 GO:0044877 GO:0046872 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051015 GO:0051704 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

138

Amino Acids

15.48

Weight (kDa)

9.46

Isoelectric Point (pI)

28.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Annexin	PF00191	2 - 60	6.4e-20	Annexin
Annexin	PF00191	70 - 135	4.2e-25	Annexin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68090 AT1G68090 AT5G10220 AT5G10230
fragaria_vesca	FvH4_5g36750 FvH4_5g36780
malus_domestica	MD08G1187000.v1.1 MD15G1372900.v1.1 MD16G1013400.v1.1
prunus_persica	Prupe.1G337800_v2.0.a1 Prupe.1G337800_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1
pyrus_communis	pycom08g16080 pycom15g33390
rosa_chinensis	RchiOBHm_Chr4g0433651 RchiOBHm_Chr7g0242801 RchiOBHm_Chr7g0242891
rosa_laevigata	RLG00000000871 RLG00000000878 RLG00000006741
rosa_multiflora	Rmu_sc0000312.1_g000020 Rmu_sc0004165.1_g000047 Rmu_sc0004165.1_g000053 Rmu_sc0007085.1_g000001 Rmu_sc0007085.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375100
rosa_rugosa	Rorug07G0317500 Rorug07G0317600
rosa_samantha	Rh4DG329300 Rh7AG472200 Rh7AG472500 Rh7AG473200 Rh7BG442900 Rh7BG443200 Rh7CG489400 Rh7CG490100 Rh7DG457900 Rh7DG458400
rosa_wichuraiana	Rw4G028130 Rw7G039090 Rw7G039130 Rw7G039340 Rw7G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	83, 131, 290
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	38, 115, 379
AfaI	GTAC	4 cut(s)	209, 222, 262, 323
AgsI	TTSAA	1 cut(s)	349
AjnI	CCWGG	2 cut(s)	168, 199
AluBI	AGCT	1 cut(s)	90
AluI	AGCT	1 cut(s)	90
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	2 cut(s)	137, 362
AoxI	GGCC	3 cut(s)	3, 166, 354
ApoI	RAATTY	3 cut(s)	38, 115, 379
AsuC2I	CCSGG	2 cut(s)	68, 151
AsuHPI	GGTGA	4 cut(s)	97, 145, 184, 292
BanII	GRGCYC	2 cut(s)	73, 92
BarI	GAAGNNNNNNTAC	2 cut(s)	305, 337
Bbv12I	GWGCWC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	341
BciT130I	CCWGG	2 cut(s)	170, 201
BclI	TGATCA	1 cut(s)	193
BcnI	CCSGG	2 cut(s)	68, 151
BcoDI	GTCTC	2 cut(s)	137, 362
BfaI	CTAG	1 cut(s)	216
Bme1390I	CCNGG	4 cut(s)	68, 151, 170, 201
BmrFI	CCNGG	4 cut(s)	68, 151, 170, 201
BmrI	ACTGGG	1 cut(s)	29
BmuI	ACTGGG	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	203
BpuMI	CCSGG	2 cut(s)	68, 151
BsaJI	CCNNGG	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	24
BseBI	CCWGG	2 cut(s)	170, 201
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	2 cut(s)	196, 259
BseMII	CTCAG	2 cut(s)	113, 357
BseNI	ACTGG	1 cut(s)	24
BsgI	GTGCAG	1 cut(s)	209
BshFI	GGCC	3 cut(s)	5, 168, 356
BsiHKAI	GWGCWC	1 cut(s)	92
BsiSI	CCGG	3 cut(s)	6, 67, 150
BslFI	GGGAC	2 cut(s)	37, 262
BsmAI	GTCTC	2 cut(s)	137, 362
BsmFI	GGGAC	2 cut(s)	37, 262
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	3 cut(s)	5, 168, 356
Bsp1286I	GDGCHC	2 cut(s)	73, 92
Bsp143I	GATC	1 cut(s)	193
BspACI	CCGC	3 cut(s)	83, 131, 290
BspANI	GGCC	3 cut(s)	5, 168, 356
BspCNI	CTCAG	2 cut(s)	114, 358
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	1 cut(s)	193
Bst2UI	CCWGG	2 cut(s)	170, 201
BstDEI	CTNAG	2 cut(s)	122, 366
BstF5I	GGATG	2 cut(s)	196, 259
BstKTI	GATC	1 cut(s)	196
BstMAI	GTCTC	2 cut(s)	137, 362
BstMBI	GATC	1 cut(s)	193
BstNI	CCWGG	2 cut(s)	170, 201
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	4 cut(s)	66, 149, 168, 199
BsuRI	GGCC	3 cut(s)	5, 168, 356
BtgZI	GCGATG	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	196, 259
BtsIMutI	CAGTG	1 cut(s)	119
Csp6I	GTAC	4 cut(s)	208, 221, 261, 322
CviAII	CATG	2 cut(s)	106, 164
CviJI	RGCY	9 cut(s)	5, 66, 71, 90, 95, 168, 356, 389, 401
CviKI_1	RGCY	9 cut(s)	5, 66, 71, 90, 95, 168, 356, 389, 401
CviQI	GTAC	4 cut(s)	208, 221, 261, 322
DdeI	CTNAG	2 cut(s)	122, 366
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	305
Ecl136II	GAGCTC	1 cut(s)	90
Eco24I	GRGCYC	2 cut(s)	73, 92
Eco53kI	GAGCTC	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	90
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	2 cut(s)	168, 199
EcoT38I	GRGCYC	2 cut(s)	73, 92
FaeI	CATG	2 cut(s)	109, 167
FaiI	YATR	7 cut(s)	99, 107, 111, 165, 302, 309, 336
FaqI	GGGAC	2 cut(s)	37, 262
FatI	CATG	2 cut(s)	105, 163
FbaI	TGATCA	1 cut(s)	193
FokI	GGATG	2 cut(s)	183, 266
FriOI	GRGCYC	2 cut(s)	73, 92
FspBI	CTAG	1 cut(s)	216
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	3 cut(s)	5, 168, 356
HapII	CCGG	3 cut(s)	6, 67, 150
Hin1II	CATG	2 cut(s)	109, 167
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	3 cut(s)	6, 67, 150
HphI	GGTGA	4 cut(s)	97, 145, 184, 292
Hpy188I	TCNGA	2 cut(s)	78, 367
Hpy188III	TCNNGA	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	133, 232
HpyCH4V	TGCA	1 cut(s)	226
HpyF3I	CTNAG	2 cut(s)	122, 366
Hsp92II	CATG	2 cut(s)	109, 167
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	2 cut(s)	172, 280
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MboII	GAAGA	5 cut(s)	46, 148, 325, 340, 386
MhlI	GDGCHC	2 cut(s)	73, 92
MluCI	AATT	3 cut(s)	38, 115, 379
MnlI	CCTC	3 cut(s)	198, 279, 346
MslI	CAYNNNNRTG	1 cut(s)	78
MspI	CCGG	3 cut(s)	6, 67, 150
MspR9I	CCNGG	4 cut(s)	68, 151, 170, 201
Mva1269I	GAATGC	1 cut(s)	85
MvaI	CCWGG	2 cut(s)	170, 201
NciI	CCSGG	2 cut(s)	68, 151
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	2 cut(s)	109, 167
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	2 cut(s)	172, 280
NspI	RCATGY	1 cut(s)	109
PctI	GAATGC	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	178
PfoI	TCCNGGA	1 cut(s)	149
Psp124BI	GAGCTC	1 cut(s)	92
Psp6I	CCWGG	2 cut(s)	168, 199
PspGI	CCWGG	2 cut(s)	168, 199
RsaI	GTAC	4 cut(s)	209, 222, 262, 323
RsaNI	GTAC	4 cut(s)	208, 221, 261, 322
RseI	CAYNNNNRTG	1 cut(s)	78
SacI	GAGCTC	1 cut(s)	92
Sau3AI	GATC	1 cut(s)	193
ScrFI	CCNGG	4 cut(s)	68, 151, 170, 201
SduI	GDGCHC	2 cut(s)	73, 92
SetI	ASST	3 cut(s)	92, 209, 412
SmiMI	CAYNNNNRTG	1 cut(s)	78
Sse9I	AATT	3 cut(s)	38, 115, 379
SsiI	CCGC	3 cut(s)	83, 131, 290
SspMI	CTAG	1 cut(s)	216
SstI	GAGCTC	1 cut(s)	92
StyD4I	CCNGG	4 cut(s)	66, 149, 168, 199
TaqI	TCGA	3 cut(s)	45, 61, 159
TasI	AATT	3 cut(s)	38, 115, 379
TatI	WGTACW	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	178
TscAI	CASTG	1 cut(s)	126
TseFI	GTSAC	2 cut(s)	172, 280
Tsp45I	GTSAC	2 cut(s)	172, 280
TspDTI	ATGAA	1 cut(s)	251
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	126
XapI	RAATTY	3 cut(s)	38, 115, 379
XceI	RCATGY	1 cut(s)	109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.