Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000312.1

Orthogroup ID

OG0001905

Physical Location & Seq

Genomic Coordinates Reverse (-)

95443 .. 96643

Gene Structure 1201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000312.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggcatctgtgatcatcccaccggtgccaccttcgctgcgtgatggatttggatgtgatactgcagcagtagtcaatatccttgctcacaggaatattgcaacacagcgtgatgccatccaaaaaaaatacaacaccatgcactccaaagatctcaacaagctcttgtcctccgaacttagtggacatgtcaagaaagcaatattgttgtggatgcctgatccggcaacgcgtgatgcaaatatagtaaggcacgcattggatcggggtgttgatctcaaagcggccagtgaagtcatatgctctcgtactccgtcccagctgcgacaattcaagcaaatctacttttcaaatttcagtgttggcctcgaggatgacattgcatctaaagcctcaggagatcacaaaaaaggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0003006 GO:0003674 GO:0003779 GO:0005488 GO:0005509 GO:0005515 GO:0005543 GO:0006950 GO:0006970 GO:0007275 GO:0008092 GO:0008150 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009555 GO:0009628 GO:0009639 GO:0009651 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010035 GO:0016043 GO:0016049 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043167 GO:0043168 GO:0043169 GO:0044706 GO:0044877 GO:0046872 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050896 GO:0051015 GO:0051704 GO:0060560 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Annexin

Protein Analysis

138

Amino Acids

15.14

Weight (kDa)

9.39

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68090 AT1G68090 AT5G10220 AT5G10230
fragaria_vesca	FvH4_5g36750 FvH4_5g36780
malus_domestica	MD08G1187000.v1.1 MD15G1372900.v1.1 MD16G1013400.v1.1
prunus_persica	Prupe.1G337800_v2.0.a1 Prupe.1G337800_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1 Prupe.1G521500_v2.0.a1
pyrus_communis	pycom08g16080 pycom15g33390
rosa_chinensis	RchiOBHm_Chr4g0433651 RchiOBHm_Chr7g0242801 RchiOBHm_Chr7g0242891
rosa_laevigata	RLG00000000871 RLG00000000878 RLG00000006741
rosa_multiflora	Rmu_sc0000312.1_g000020 Rmu_sc0004165.1_g000047 Rmu_sc0004165.1_g000053 Rmu_sc0007085.1_g000001 Rmu_sc0007085.1_g000006
rosa_roxburghii	Rroxscaffold_5G00375100
rosa_rugosa	Rorug07G0317500 Rorug07G0317600
rosa_samantha	Rh4DG329300 Rh7AG472200 Rh7AG472500 Rh7AG473200 Rh7BG442900 Rh7BG443200 Rh7CG489400 Rh7CG490100 Rh7DG457900 Rh7DG458400
rosa_wichuraiana	Rw4G028130 Rw7G039090 Rw7G039130 Rw7G039340 Rw7G039360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	368
AccB1I	GGYRCC	1 cut(s)	25
AccII	CGCG	1 cut(s)	232
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	2 cut(s)	215, 270
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	352
AdeI	CACNNNGTG	1 cut(s)	110
AfaI	GTAC	1 cut(s)	310
AflIII	ACRYGT	2 cut(s)	187, 230
AgeI	ACCGGT	1 cut(s)	22
AgsI	TTSAA	2 cut(s)	334, 351
AluBI	AGCT	2 cut(s)	163, 322
AluI	AGCT	2 cut(s)	163, 322
AlwI	GGATC	2 cut(s)	215, 270
Ama87I	CYCGRG	1 cut(s)	368
AoxI	GGCC	2 cut(s)	285, 364
ApeKI	GCWGC	3 cut(s)	37, 65, 322
ApoI	RAATTY	1 cut(s)	352
AsiGI	ACCGGT	1 cut(s)	22
AvaI	CYCGRG	1 cut(s)	368
AxyI	CCTNAGG	1 cut(s)	394
BanI	GGYRCC	1 cut(s)	25
BbvI	GCAGC	3 cut(s)	24, 77, 309
BccI	CCATC	2 cut(s)	38, 125
BclI	TGATCA	1 cut(s)	12
BfaI	CTAG	1 cut(s)	415
BfmI	CTRYAG	1 cut(s)	63
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	4 cut(s)	38, 66, 285, 323
BlsI	GCNGC	4 cut(s)	39, 67, 286, 324
BmeT110I	CYCGRG	1 cut(s)	368
BmiI	GGNNCC	1 cut(s)	27
BmsI	GCATC	5 cut(s)	14, 103, 204, 226, 392
BsaWI	WCCGGW	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	288
Bse21I	CCTNAGG	1 cut(s)	394
Bse3DI	GCAATG	1 cut(s)	378
BseGI	GGATG	5 cut(s)	15, 59, 117, 219, 379
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	288
BseXI	GCAGC	3 cut(s)	24, 77, 309
BseYI	CCCAGC	1 cut(s)	318
Bsh1236I	CGCG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	287, 366
BshNI	GGYRCC	1 cut(s)	25
BshTI	ACCGGT	1 cut(s)	22
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	2 cut(s)	23, 224
BslFI	GGGAC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	301
BsnI	GGCC	2 cut(s)	287, 366
BsoBI	CYCGRG	1 cut(s)	368
Bsp143I	GATC	6 cut(s)	12, 151, 220, 262, 274, 400
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	2 cut(s)	287, 366
BspCNI	CTCAG	1 cut(s)	407
BspFNI	CGCG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	27
BspMAI	CTGCAG	1 cut(s)	67
BspPI	GGATC	2 cut(s)	215, 270
BspT107I	GGYRCC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	288
BssAI	RCCGGY	1 cut(s)	22
BssMI	GATC	6 cut(s)	12, 151, 220, 262, 274, 400
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	179, 394
BstF5I	GGATG	5 cut(s)	15, 59, 117, 219, 379
BstFNI	CGCG	1 cut(s)	232
BstKTI	GATC	6 cut(s)	15, 154, 223, 265, 277, 403
BstMBI	GATC	6 cut(s)	12, 151, 220, 262, 274, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 389
BstNSI	RCATGY	1 cut(s)	191
BstSFI	CTRYAG	1 cut(s)	63
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	3 cut(s)	24, 77, 309
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
Bsu36I	CCTNAGG	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	287, 366
BtsCI	GGATG	5 cut(s)	15, 59, 117, 219, 379
BtsIMutI	CAGTG	2 cut(s)	295, 364
Cac8I	GCNNGC	1 cut(s)	255
Cfr10I	RCCGGY	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	309
CspAI	ACCGGT	1 cut(s)	22
CviAII	CATG	2 cut(s)	139, 188
CviJI	RGCY	6 cut(s)	163, 287, 322, 366, 392, 414
CviKI_1	RGCY	6 cut(s)	163, 287, 322, 366, 392, 414
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	2 cut(s)	179, 394
DpnI	GATC	6 cut(s)	14, 153, 222, 264, 276, 402
DpnII	GATC	6 cut(s)	12, 151, 220, 262, 274, 400
DraIII	CACNNNGTG	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	285
Eco81I	CCTNAGG	1 cut(s)	394
Eco88I	CYCGRG	1 cut(s)	368
FaeI	CATG	2 cut(s)	142, 191
FaiI	YATR	5 cut(s)	140, 189, 245, 299, 301
FaqI	GGGAC	1 cut(s)	301
FatI	CATG	2 cut(s)	138, 187
FauNDI	CATATG	1 cut(s)	299
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	4 cut(s)	38, 66, 285, 323
FokI	GGATG	5 cut(s)	2, 66, 104, 226, 386
Fsp4HI	GCNGC	4 cut(s)	38, 66, 285, 323
FspBI	CTAG	1 cut(s)	415
GluI	GCNGC	4 cut(s)	38, 66, 285, 323
GsaI	CCCAGC	1 cut(s)	322
HaeIII	GGCC	2 cut(s)	287, 366
HapII	CCGG	2 cut(s)	23, 224
Hin1II	CATG	2 cut(s)	142, 191
HpaII	CCGG	2 cut(s)	23, 224
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	2 cut(s)	193, 396
Hpy8I	GTNNAC	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	42
HpyCH4V	TGCA	5 cut(s)	65, 101, 142, 239, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 389
HpyF3I	CTNAG	2 cut(s)	179, 394
Hsp92II	CATG	2 cut(s)	142, 191
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	6 cut(s)	12, 151, 220, 262, 274, 400
LpnPI	CCDG	7 cut(s)	36, 76, 231, 237, 301, 332, 381
Lsp1109I	GCAGC	3 cut(s)	24, 77, 309
LweI	GCATC	5 cut(s)	14, 103, 204, 226, 392
MaeI	CTAG	1 cut(s)	415
MalI	GATC	6 cut(s)	14, 153, 222, 264, 276, 402
MboI	GATC	6 cut(s)	12, 151, 220, 262, 274, 400
MflI	RGATCY	1 cut(s)	151
MluCI	AATT	2 cut(s)	329, 352
MluI	ACGCGT	1 cut(s)	230
MnlI	CCTC	4 cut(s)	181, 364, 377, 403
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	2 cut(s)	23, 224
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	2 cut(s)	34, 389
NdeI	CATATG	1 cut(s)	299
NdeII	GATC	6 cut(s)	12, 151, 220, 262, 274, 400
NlaIII	CATG	2 cut(s)	142, 191
NlaIV	GGNNCC	1 cut(s)	27
NspI	RCATGY	1 cut(s)	191
PaeR7I	CTCGAG	1 cut(s)	368
PciI	ACATGT	1 cut(s)	187
PinAI	ACCGGT	1 cut(s)	22
PkrI	GCNGC	4 cut(s)	39, 67, 286, 324
PscI	ACATGT	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	27
PspXI	VCTCGAGB	1 cut(s)	368
PstI	CTGCAG	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	322
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SatI	GCNGC	4 cut(s)	38, 66, 285, 323
Sau3AI	GATC	6 cut(s)	12, 151, 220, 262, 274, 400
SetI	ASST	3 cut(s)	34, 165, 324
SfaNI	GCATC	5 cut(s)	14, 103, 204, 226, 392
SfcI	CTRYAG	1 cut(s)	63
Sfr274I	CTCGAG	1 cut(s)	368
SgrAI	CRCCGGYG	1 cut(s)	22
SlaI	CTCGAG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	2 cut(s)	329, 352
SsiI	CCGC	1 cut(s)	284
SspI	AATATT	2 cut(s)	97, 204
SspMI	CTAG	1 cut(s)	415
TaqI	TCGA	1 cut(s)	369
TasI	AATT	2 cut(s)	329, 352
TauI	GCSGC	1 cut(s)	287
TscAI	CASTG	2 cut(s)	295, 364
TseI	GCWGC	3 cut(s)	37, 65, 322
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	2 cut(s)	295, 364
XapI	RAATTY	1 cut(s)	352
XceI	RCATGY	1 cut(s)	191
XhoI	CTCGAG	1 cut(s)	368
XspI	CTAG	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.